@datagrok/bio 2.0.30 → 2.0.31

package/package.json

@@ -5,7 +5,7 @@
     "name": "Leonid Stolbov",
     "email": "lstolbov@datagrok.ai"
   },
-  "version": "2.0.30",
+  "version": "2.0.31",
   "description": "Bio is a [package](https://datagrok.ai/help/develop/develop#packages) for the [Datagrok](https://datagrok.ai) platform",
   "repository": {
     "type": "git",
@@ -14,12 +14,12 @@
   },
   "dependencies": {
     "@biowasm/aioli": "^3.1.0",
-    "@datagrok-libraries/bio": "^5.7.0",
+    "@datagrok-libraries/bio": "^5.8.0",
     "@datagrok-libraries/chem-meta": "1.0.1",
     "@datagrok-libraries/ml": "^6.2.1",
-    "@datagrok-libraries/utils": "^1.11.1",
+    "@datagrok-libraries/utils": "^1.14.1",
     "cash-dom": "^8.0.0",
-    "datagrok-api": "^1.7.0",
+    "datagrok-api": "^1.8.1",
     "dayjs": "^1.11.4",
     "openchemlib": "6.0.1",
     "rxjs": "^6.5.5",

package/src/tests/activity-cliffs-utils.ts

@@ -1,20 +1,21 @@
 import * as DG from 'datagrok-api/dg';
+import * as grok from 'datagrok-api/grok';
+
 import {delay, expect} from '@datagrok-libraries/utils/src/test';
 import {_package} from '../package-test';
-import { activityCliffs } from '../package';
-import * as grok from 'datagrok-api/grok';
+import {activityCliffs} from '../package';
 
 export async function _testActivityCliffsOpen(df: DG.DataFrame, numberCliffs: number, method: string, colName: string) {
   await grok.data.detectSemanticTypes(df);
   const scatterPlot = await activityCliffs(
-     df, 
-     df.col(colName)!, 
-     df.col('Activity')!, 
-     90, 
-     method);
+    df,
+    df.col(colName)!,
+    df.col('Activity')!,
+    90,
+    method);
 
-    expect(scatterPlot != null, true);
+  expect(scatterPlot != null, true);
 
-    const cliffsLink = Array.from(scatterPlot!.root.children).filter(it => it.className === 'ui-btn ui-btn-ok');
-    expect((cliffsLink[0] as HTMLElement).innerText, `${numberCliffs} cliffs`);
+  const cliffsLink = Array.from(scatterPlot!.root.children).filter(it => it.className === 'ui-btn ui-btn-ok');
+  expect((cliffsLink[0] as HTMLElement).innerText.toLowerCase(), `${numberCliffs} cliffs`);
 }

package/src/tests/renderers-test.ts

@@ -58,7 +58,7 @@ category('renderers', () => {
 
   test('setRendererManually', async () => {
     await _setRendererManually();
-  });
+  }, {skipReason: 'GROK-11212'});
 
   async function _rendererMacromoleculeFasta() {
     const csv: string = await grok.dapi.files.readAsText('System:AppData/Bio/samples/sample_FASTA.csv');

package/src/tests/substructure-filter-tests.ts

@@ -45,9 +45,21 @@ category('substructureFilters', async () => {
     const filter = new BioSubstructureFilter();
     await grok.data.detectSemanticTypes(helm);
     filter.attach(helm);
+
+    const helmFilterChanged = new Promise((resolve, reject) => {
+      helm.onFilterChanged.subscribe(async (_: any) => {
+        try {
+          resolve(true);
+        } catch (error) {
+          reject(error);
+        }
+      });
+    });
     (filter.bioFilter! as HelmFilter).helmSubstructure = 'PEPTIDE1{C}$$$$V2.0';
     filter.bioFilter!.onChanged.next();
-    await delay(2000);
+    await helmFilterChanged;
+
+    //await delay(3000);
     expect(filter.dataFrame!.filter.trueCount, 2);
     expect(filter.dataFrame!.filter.get(0), true);
     expect(filter.dataFrame!.filter.get(3), true);