@datagrok/bio 2.0.12 → 2.0.13

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (6) hide show
  1. package/dist/package-test.js +25 -16
  2. package/dist/package.js +24 -15
  3. package/package.json +1 -1
  4. package/src/tests/renderers-test.ts +1 -1
  5. package/src/utils/sequence-activity-cliffs.ts +34 -18
  6. package/{test-Bio-7770371320b2-f955a7eb.html → test-Bio-7770371320b2-f8f97c6e.html} +99 -99
package/package.json CHANGED
@@ -5,7 +5,7 @@
5
5
  "name": "Leonid Stolbov",
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  "email": "lstolbov@datagrok.ai"
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  },
8
- "version": "2.0.12",
8
+ "version": "2.0.13",
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  "description": "Bio is a [package](https://datagrok.ai/help/develop/develop#packages) for the [Datagrok](https://datagrok.ai) platform",
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  "repository": {
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  "type": "git",
package/src/tests/renderers-test.ts CHANGED
@@ -119,7 +119,7 @@ category('renderers', () => {
119
119
  }
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120
 
121
121
  async function _testAfterMsa() {
122
- const fastaTxt: string = await grok.dapi.files.readAsText('System:AppData/Bio/samples/sample_FASTA.fasta');
122
+ const fastaTxt: string = await grok.dapi.files.readAsText('System:AppData/Bio/data/sample_FASTA.fasta');
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  const df: DG.DataFrame = importFasta(fastaTxt)[0];
124
124
 
125
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  const srcSeqCol: DG.Column = df.getCol('sequence');
package/src/utils/sequence-activity-cliffs.ts CHANGED
@@ -83,15 +83,42 @@ export function createPropPanelElement(params: ITooltipAndPanelParams): HTMLDivE
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  sequencesArray[idx] = params.seqCol.get(molIdx);
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  activitiesArray[idx] = params.activityCol.get(molIdx);
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  });
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+
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+ const molDifferences: {[key: number]: HTMLCanvasElement} = {};
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+ const canvas = createDifferenceCanvas(params.seqCol, sequencesArray, molDifferences);
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+ propPanel.append(ui.div(canvas, { style: { width: '300px', overflow: 'scroll' } }));
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+
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+ propPanel.append(createDifferencesWithPositions(molDifferences));
92
+
93
+ propPanel.append(createPropPanelField('Activity delta', Math.abs(activitiesArray[0] - activitiesArray[1])));
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+ propPanel.append(createPropPanelField('Cliff', params.sali!));
95
+
96
+ return propPanel;
97
+ }
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+
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+ function createPropPanelField(name: string, value: number): HTMLDivElement {
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+ return ui.divH([
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+ ui.divText(`${name}: `, { style: { fontWeight: 'bold', paddingRight: '5px' } }),
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+ ui.divText(value.toFixed(2))
103
+ ], { style: { paddingTop: '5px' } });
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+ }
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+
106
+ function createDifferenceCanvas(
107
+ col: DG.Column,
108
+ sequencesArray: string[],
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+ molDifferences: { [key: number]: HTMLCanvasElement }): HTMLCanvasElement {
86
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  const canvas = document.createElement('canvas');
87
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  const context = canvas.getContext('2d');
88
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  canvas.height = 30;
89
- const units = params.seqCol.getTag(DG.TAGS.UNITS);
90
- const separator = params.seqCol.getTag(TAGS.SEPARATOR);
91
- const molDifferences: {[key: number]: HTMLCanvasElement} = {};
113
+ const units = col.getTag(DG.TAGS.UNITS);
114
+ const separator = col.getTag(TAGS.SEPARATOR);
92
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  drawMoleculeDifferenceOnCanvas(context!, 0, 0, 0, 30, sequencesArray.join('#'), units, separator, true, molDifferences);
93
- propPanel.append(ui.div(canvas, { style: { width: '300px', overflow: 'scroll' } }));
94
-
116
+ return canvas;
117
+ }
118
+
119
+ function createDifferencesWithPositions(
120
+ molDifferences: { [key: number]: HTMLCanvasElement }): HTMLDivElement {
121
+ const div = ui.div();
95
122
  if (Object.keys(molDifferences).length > 0) {
96
123
  const diffsPanel = ui.divV([]);
97
124
  diffsPanel.append(ui.divH([
@@ -104,18 +131,7 @@ export function createPropPanelElement(params: ITooltipAndPanelParams): HTMLDivE
104
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  molDifferences[key as any]
105
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  ]));
106
133
  }
107
- propPanel.append(diffsPanel);
134
+ div.append(diffsPanel);
108
135
  }
109
-
110
- function addFiledToPropPanel(name: string, value: number) {
111
- propPanel.append(ui.divH([
112
- ui.divText(`${name}: `, { style: { fontWeight: 'bold', paddingRight: '5px' } }),
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- ui.divText(value.toFixed(2))
114
- ], { style: { paddingTop: '5px' } }));
115
- }
116
-
117
- addFiledToPropPanel('Activity delta', Math.abs(activitiesArray[0] - activitiesArray[1]));
118
- addFiledToPropPanel('Cliff', params.sali!);
119
-
120
- return propPanel;
136
+ return div;
121
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  }
package/{test-Bio-7770371320b2-f955a7eb.html → test-Bio-7770371320b2-f8f97c6e.html} RENAMED
@@ -1,4 +1,4 @@
1
- <html><head><meta charset="utf-8"/><title>Bio Test Report. Datagrok version datagrok/datagrok:latest SHA=7770371320b2. Commit f955a7eb.</title><style type="text/css">html,
1
+ <html><head><meta charset="utf-8"/><title>Bio Test Report. Datagrok version datagrok/datagrok:latest SHA=7770371320b2. Commit f8f97c6e.</title><style type="text/css">html,
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  body {
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  font-family: Arial, Helvetica, sans-serif;
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  font-size: 1rem;
@@ -229,9 +229,7 @@ header {
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  font-size: 1rem;
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  padding: 0 0.5rem;
231
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  }
232
- </style></head><body><div id="jesthtml-content"><header><h1 id="title">Bio Test Report. Datagrok version datagrok/datagrok:latest SHA=7770371320b2. Commit f955a7eb.</h1></header><div id="metadata-container"><div id="timestamp">Started: 2022-09-20 08:18:04</div><div id="summary"><div id="suite-summary"><div class="summary-total">Suites (1)</div><div class="summary-passed summary-empty">0 passed</div><div class="summary-failed">1 failed</div><div class="summary-pending summary-empty">0 pending</div></div><div id="test-summary"><div class="summary-total">Tests (1)</div><div class="summary-passed summary-empty">0 passed</div><div class="summary-failed">1 failed</div><div class="summary-pending summary-empty">0 pending</div></div></div></div><div id="suite-1" class="suite-container"><div class="suite-info"><div class="suite-path">/home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts</div><div class="suite-time warn">39.844s</div></div><div class="suite-tests"><div class="test-result failed"><div class="test-info"><div class="test-suitename"> </div><div class="test-title">TEST</div><div class="test-status">failed</div><div class="test-duration">25.009s</div></div><div class="failureMessages"> <pre class="failureMsg">Error: Test result : Failed : 247 : Bio.renderers.afterMsa : Request failed with status 502: Bad Gateway
233
- Test result : Failed : 11 : Bio.renderers.afterConvert : Request failed with status 502: Bad Gateway
234
- Test result : Failed : 187 : Bio.renderers.setRendererManually : Error: Tag 'cell.renderer' has been manually set to 'MacromoleculeDifference' for column but after df was added as table, tag 'cell.renderer' has reset to 'sequence' instead of manual 'MacromoleculeDifference'.
232
+ </style></head><body><div id="jesthtml-content"><header><h1 id="title">Bio Test Report. Datagrok version datagrok/datagrok:latest SHA=7770371320b2. Commit f8f97c6e.</h1></header><div id="metadata-container"><div id="timestamp">Started: 2022-09-20 10:00:38</div><div id="summary"><div id="suite-summary"><div class="summary-total">Suites (1)</div><div class="summary-passed summary-empty">0 passed</div><div class="summary-failed">1 failed</div><div class="summary-pending summary-empty">0 pending</div></div><div id="test-summary"><div class="summary-total">Tests (1)</div><div class="summary-passed summary-empty">0 passed</div><div class="summary-failed">1 failed</div><div class="summary-pending summary-empty">0 pending</div></div></div></div><div id="suite-1" class="suite-container"><div class="suite-info"><div class="suite-path">/home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts</div><div class="suite-time warn">42.219s</div></div><div class="suite-tests"><div class="test-result failed"><div class="test-info"><div class="test-suitename"> </div><div class="test-title">TEST</div><div class="test-status">failed</div><div class="test-duration">24.883s</div></div><div class="failureMessages"> <pre class="failureMsg">Error: Test result : Failed : 208 : Bio.renderers.setRendererManually : Error: Tag 'cell.renderer' has been manually set to 'MacromoleculeDifference' for column but after df was added as table, tag 'cell.renderer' has reset to 'sequence' instead of manual 'MacromoleculeDifference'.
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  at /home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:68:20
237
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  at Generator.next (&lt;anonymous&gt;)
@@ -251,124 +249,126 @@ Test result : Failed : 187 : Bio.renderers.setRendererManually : Error: Tag 'cel
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  at Generator.next (&lt;anonymous&gt;)
252
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  at fulfilled (/home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:31:58)
253
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  at runMicrotasks (&lt;anonymous&gt;)
254
- at processTicksAndRejections (internal/process/task_queues.js:97:5)</pre><pre class="suite-consolelog-item-message">Test result : Success : 11 : Bio.WebLogo.testGetStats : OK
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+ at processTicksAndRejections (internal/process/task_queues.js:97:5)</pre><pre class="suite-consolelog-item-message">Test result : Success : 13 : Bio.WebLogo.testGetStats : OK
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  Test result : Success : 1 : Bio.WebLogo.testGetAlphabetSimilarity : OK
256
- Test result : Success : 5 : Bio.WebLogo.testPickupPaletteN1 : OK
257
- Test result : Success : 2 : Bio.WebLogo.testPickupPaletteN1e : OK
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- Test result : Success : 7 : Bio.WebLogo.testPickupPaletteAA1 : OK
254
+ Test result : Success : 2 : Bio.WebLogo.testPickupPaletteN1 : OK
255
+ Test result : Success : 4 : Bio.WebLogo.testPickupPaletteN1e : OK
256
+ Test result : Success : 1 : Bio.WebLogo.testPickupPaletteAA1 : OK
259
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  Test result : Success : 2 : Bio.WebLogo.testPickupPaletteX : OK
260
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  Test result : Success : 0 : Bio.WebLogo.monomerToText.longMonomerSingle : OK
261
- Test result : Success : 0 : Bio.WebLogo.monomerToText.longMonomerShort : OK
259
+ Test result : Success : 1 : Bio.WebLogo.monomerToText.longMonomerShort : OK
262
260
  Test result : Success : 0 : Bio.WebLogo.monomerToText.longMonomerLong56 : OK
263
- Test result : Success : 1 : Bio.WebLogo.monomerToText.longMonomerComplexFirstPartShort : OK
264
- Test result : Success : 0 : Bio.WebLogo.monomerToText.longMonomerComplexFirstPartLong56 : OK
265
- Test result : Success : 1 : Bio.Palettes.testPaletteN : OK
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+ Test result : Success : 0 : Bio.WebLogo.monomerToText.longMonomerComplexFirstPartShort : OK
262
+ Test result : Success : 1 : Bio.WebLogo.monomerToText.longMonomerComplexFirstPartLong56 : OK
263
+ Test result : Success : 0 : Bio.Palettes.testPaletteN : OK
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264
  Test result : Success : 0 : Bio.Palettes.testPaletteAA : OK
267
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  Test result : Success : 1 : Bio.Palettes.testPalettePtMe : OK
268
- Test result : Success : 78 : Bio.detectors.NegativeEmpty : OK
269
- Test result : Success : 26 : Bio.detectors.Negative1 : OK
270
- Test result : Success : 31 : Bio.detectors.Negative2 : OK
271
- Test result : Success : 25 : Bio.detectors.Negative3 : OK
272
- Test result : Success : 22 : Bio.detectors.NegativeSmiles : OK
273
- Test result : Success : 10 : Bio.detectors.Dna1 : OK
274
- Test result : Success : 35 : Bio.detectors.Rna1 : OK
275
- Test result : Success : 43 : Bio.detectors.AA1 : OK
276
- Test result : Success : 23 : Bio.detectors.MsaDna1 : OK
277
- Test result : Success : 12 : Bio.detectors.MsaAA1 : OK
278
- Test result : Success : 38 : Bio.detectors.SepDna : OK
279
- Test result : Success : 25 : Bio.detectors.SepRna : OK
280
- Test result : Success : 18 : Bio.detectors.SepPt : OK
281
- Test result : Success : 15 : Bio.detectors.SepUn1 : OK
282
- Test result : Success : 15 : Bio.detectors.SepUn2 : OK
283
- Test result : Success : 7 : Bio.detectors.SepMsaN1 : OK
284
- Test result : Success : 659 : Bio.detectors.SamplesFastaCsvPt : OK
285
- Test result : Success : 18 : Bio.detectors.SamplesFastaCsvNegativeEntry : OK
286
- Test result : Success : 23 : Bio.detectors.SamplesFastaCsvNegativeLength : OK
266
+ Test result : Success : 100 : Bio.detectors.NegativeEmpty : OK
267
+ Test result : Success : 19 : Bio.detectors.Negative1 : OK
268
+ Test result : Success : 20 : Bio.detectors.Negative2 : OK
269
+ Test result : Success : 27 : Bio.detectors.Negative3 : OK
270
+ Test result : Success : 23 : Bio.detectors.NegativeSmiles : OK
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+ Test result : Success : 15 : Bio.detectors.Dna1 : OK
272
+ Test result : Success : 31 : Bio.detectors.Rna1 : OK
273
+ Test result : Success : 49 : Bio.detectors.AA1 : OK
274
+ Test result : Success : 24 : Bio.detectors.MsaDna1 : OK
275
+ Test result : Success : 24 : Bio.detectors.MsaAA1 : OK
276
+ Test result : Success : 36 : Bio.detectors.SepDna : OK
277
+ Test result : Success : 24 : Bio.detectors.SepRna : OK
278
+ Test result : Success : 22 : Bio.detectors.SepPt : OK
279
+ Test result : Success : 6 : Bio.detectors.SepUn1 : OK
280
+ Test result : Success : 20 : Bio.detectors.SepUn2 : OK
281
+ Test result : Success : 12 : Bio.detectors.SepMsaN1 : OK
282
+ Test result : Success : 546 : Bio.detectors.SamplesFastaCsvPt : OK
283
+ Test result : Success : 15 : Bio.detectors.SamplesFastaCsvNegativeEntry : OK
284
+ Test result : Success : 19 : Bio.detectors.SamplesFastaCsvNegativeLength : OK
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285
  Test result : Success : 72 : Bio.detectors.SamplesFastaCsvNegativeUniProtKB : OK
288
- Test result : Success : 361 : Bio.detectors.SamplesFastaFastaPt : OK
289
- Test result : Success : 1082 : Bio.detectors.samplesPeptidesComplexNegativeID : OK
290
- Test result : Success : 23 : Bio.detectors.SamplesPeptidesComplexNegativeMeasured : OK
291
- Test result : Success : 190 : Bio.detectors.SamplesPeptidesComplexNegativeValue : OK
292
- Test result : Success : 265 : Bio.detectors.samplesMsaComplexUn : OK
293
- Test result : Success : 42 : Bio.detectors.samplesMsaComplexNegativeActivity : OK
294
- Test result : Success : 197 : Bio.detectors.samplesIdCsvNegativeID : OK
295
- Test result : Success : 263 : Bio.detectors.samplesSarSmallCsvNegativeSmiles : OK
296
- Test result : Success : 220 : Bio.detectors.samplesHelmCsvHELM : OK
297
- Test result : Success : 27 : Bio.detectors.samplesHelmCsvNegativeActivity : OK
298
- Test result : Success : 189 : Bio.detectors.samplesTestHelmNegativeID : OK
299
- Test result : Success : 13 : Bio.detectors.samplesTestHelmNegativeTestType : OK
300
- Test result : Success : 8 : Bio.detectors.samplesTestHelmPositiveHelmString : OK
301
- Test result : Success : 4 : Bio.detectors.samplesTestHelmNegativeValid : OK
286
+ Test result : Success : 332 : Bio.detectors.SamplesFastaFastaPt : OK
287
+ Test result : Success : 1001 : Bio.detectors.samplesPeptidesComplexNegativeID : OK
288
+ Test result : Success : 25 : Bio.detectors.SamplesPeptidesComplexNegativeMeasured : OK
289
+ Test result : Success : 179 : Bio.detectors.SamplesPeptidesComplexNegativeValue : OK
290
+ Test result : Success : 266 : Bio.detectors.samplesMsaComplexUn : OK
291
+ Test result : Success : 35 : Bio.detectors.samplesMsaComplexNegativeActivity : OK
292
+ Test result : Success : 186 : Bio.detectors.samplesIdCsvNegativeID : OK
293
+ Test result : Success : 199 : Bio.detectors.samplesSarSmallCsvNegativeSmiles : OK
294
+ Test result : Success : 199 : Bio.detectors.samplesHelmCsvHELM : OK
295
+ Test result : Success : 24 : Bio.detectors.samplesHelmCsvNegativeActivity : OK
296
+ Test result : Success : 183 : Bio.detectors.samplesTestHelmNegativeID : OK
297
+ Test result : Success : 14 : Bio.detectors.samplesTestHelmNegativeTestType : OK
298
+ Test result : Success : 9 : Bio.detectors.samplesTestHelmPositiveHelmString : OK
299
+ Test result : Success : 7 : Bio.detectors.samplesTestHelmNegativeValid : OK
302
300
  Test result : Success : 4 : Bio.detectors.samplesTestHelmNegativeMolWeight : OK
303
- Test result : Success : 6 : Bio.detectors.samplesTestHelmNegativeMolFormula : OK
304
- Test result : Success : 8 : Bio.detectors.samplesTestHelmNegativeSmiles : OK
305
- Test result : Success : 1404 : Bio.detectors.samplesTestDemogNegativeAll : OK
306
- Test result : Success : 500 : Bio.detectors.samplesTestSmiles2NegativeSmiles : OK
307
- Test result : Success : 170 : Bio.detectors.samplesTestActivityCliffsNegativeSmiles : OK
308
- Test result : Success : 159 : Bio.detectors.samplesFastaPtPosSequence : OK
309
- Test result : Success : 208 : Bio.detectors.samplesTestCerealNegativeCerealName : OK
310
- Test result : Success : 357 : Bio.detectors.samplesTestSpgi100NegativeStereoCategory : OK
301
+ Test result : Success : 13 : Bio.detectors.samplesTestHelmNegativeMolFormula : OK
302
+ Test result : Success : 9 : Bio.detectors.samplesTestHelmNegativeSmiles : OK
303
+ Test result : Success : 1031 : Bio.detectors.samplesTestDemogNegativeAll : OK
304
+ Test result : Success : 554 : Bio.detectors.samplesTestSmiles2NegativeSmiles : OK
305
+ Test result : Success : 176 : Bio.detectors.samplesTestActivityCliffsNegativeSmiles : OK
306
+ Test result : Success : 177 : Bio.detectors.samplesFastaPtPosSequence : OK
307
+ Test result : Success : 169 : Bio.detectors.samplesTestCerealNegativeCerealName : OK
308
+ Test result : Success : 680 : Bio.detectors.samplesTestSpgi100NegativeStereoCategory : OK
311
309
  Test result : Success : 4 : Bio.detectors.samplesTestSpgi100NegativeScaffoldNames : OK
312
- Test result : Success : 17 : Bio.detectors.samplesTestSpgi100NegativePrimaryScaffoldName : OK
313
- Test result : Success : 5 : Bio.detectors.samplesTestSpgi100NegativeSampleName : OK
314
- Test result : Success : 188 : Bio.detectors.samplesTestUnichemSourcesNegativeSrcUrl : OK
315
- Test result : Success : 4 : Bio.detectors.samplesTestUnichemSourcesNegativeBaseIdUrl : OK
316
- Test result : Success : 224 : Bio.detectors.samplesTestDmvOfficesNegativeOfficeName : OK
310
+ Test result : Success : 11 : Bio.detectors.samplesTestSpgi100NegativePrimaryScaffoldName : OK
311
+ Test result : Success : 4 : Bio.detectors.samplesTestSpgi100NegativeSampleName : OK
312
+ Test result : Success : 216 : Bio.detectors.samplesTestUnichemSourcesNegativeSrcUrl : OK
313
+ Test result : Success : 3 : Bio.detectors.samplesTestUnichemSourcesNegativeBaseIdUrl : OK
314
+ Test result : Success : 213 : Bio.detectors.samplesTestDmvOfficesNegativeOfficeName : OK
317
315
  Test result : Success : 5 : Bio.detectors.samplesTestDmvOfficesNegativeCity : OK
318
- Test result : Success : 264 : Bio.detectors.samplesTestAlertCollectionNegativeSmarts : OK
319
- Test result : Success : 1215 : Bio.MSA.isCorrect : OK
320
- Test result : Success : 258 : Bio.MSA.isCorrectLong : OK
321
- Test result : Success : 1255 : Bio.sequenceSpace.sequenceSpaceOpens : OK
322
- Test result : Success : 4489 : Bio.sequenceSpace.sequenceSpaceOpensWithEmptyRows : OK
323
- Test result : Success : 926 : Bio.activityCliffs.activityCliffsOpen : OK
316
+ Test result : Success : 237 : Bio.detectors.samplesTestAlertCollectionNegativeSmarts : OK
317
+ Test result : Success : 1083 : Bio.MSA.isCorrect : OK
318
+ Test result : Success : 257 : Bio.MSA.isCorrectLong : OK
319
+ Test result : Success : 1244 : Bio.sequenceSpace.sequenceSpaceOpens : OK
320
+ Test result : Success : 6056 : Bio.sequenceSpace.sequenceSpaceOpensWithEmptyRows : OK
321
+ Test result : Success : 941 : Bio.activityCliffs.activityCliffsOpen : OK
324
322
  Test result : Success : 857 : Bio.activityCliffs.activityCliffsOpenWithEmptyRows : OK
325
- Test result : Success : 1 : Bio.splitters.helm1 : OK
323
+ Test result : Success : 2 : Bio.splitters.helm1 : OK
326
324
  Test result : Success : 1 : Bio.splitters.helm2 : OK
327
325
  Test result : Success : 1 : Bio.splitters.helm3-multichar : OK
328
- Test result : Success : 0 : Bio.splitters.testHelm1 : OK
329
- Test result : Success : 1 : Bio.splitters.testHelm2 : OK
330
- Test result : Success : 0 : Bio.splitters.testHelm3 : OK
331
- Test result : Success : 282 : Bio.splitters.splitToMonomers : OK
332
- Test result : Success : 3 : Bio.splitters.getHelmMonomers : OK
333
- Test result : Success : 77 : Bio.renderers.long sequence performance : OK
334
- Test result : Success : 588 : Bio.renderers.many sequence performance : OK
335
- Test result : Success : 333 : Bio.renderers.rendererMacromoleculeFasta : OK
336
- Test result : Success : 207 : Bio.renderers.rendererMacromoleculeSeparator : OK
337
- Test result : Success : 64 : Bio.renderers.rendererMacromoleculeDifference : OK
338
- Test result : Success : 181 : Bio.renderers.selectRendererBySemType : OK
339
- Test result : Success : 6 : Bio.converters.testFastaPtToSeparator : OK
340
- Test result : Success : 4 : Bio.converters.testFastaDnaToSeparator : OK
341
- Test result : Success : 13 : Bio.converters.testFastaRnaToSeparator : OK
342
- Test result : Success : 4 : Bio.converters.testFastaGapsToSeparator : OK
343
- Test result : Success : 3 : Bio.converters.testFastaPtToHelm : OK
344
- Test result : Success : 9 : Bio.converters.testFastaDnaToHelm : OK
345
- Test result : Success : 7 : Bio.converters.testFastaRnaToHelm : OK
326
+ Test result : Success : 1 : Bio.splitters.testHelm1 : OK
327
+ Test result : Success : 2 : Bio.splitters.testHelm2 : OK
328
+ Test result : Success : 1 : Bio.splitters.testHelm3 : OK
329
+ Test result : Success : 263 : Bio.splitters.splitToMonomers : OK
330
+ Test result : Success : 1 : Bio.splitters.getHelmMonomers : OK
331
+ Test result : Success : 75 : Bio.renderers.long sequence performance : OK
332
+ Test result : Success : 573 : Bio.renderers.many sequence performance : OK
333
+ Test result : Success : 238 : Bio.renderers.rendererMacromoleculeFasta : OK
334
+ Test result : Success : 246 : Bio.renderers.rendererMacromoleculeSeparator : OK
335
+ Test result : Success : 70 : Bio.renderers.rendererMacromoleculeDifference : OK
336
+ Test result : Success : 440 : Bio.renderers.afterMsa : OK
337
+ Test result : Success : 281 : Bio.renderers.afterConvert : OK
338
+ Test result : Success : 185 : Bio.renderers.selectRendererBySemType : OK
339
+ Test result : Success : 4 : Bio.converters.testFastaPtToSeparator : OK
340
+ Test result : Success : 3 : Bio.converters.testFastaDnaToSeparator : OK
341
+ Test result : Success : 3 : Bio.converters.testFastaRnaToSeparator : OK
342
+ Test result : Success : 20 : Bio.converters.testFastaGapsToSeparator : OK
343
+ Test result : Success : 2 : Bio.converters.testFastaPtToHelm : OK
344
+ Test result : Success : 2 : Bio.converters.testFastaDnaToHelm : OK
345
+ Test result : Success : 1 : Bio.converters.testFastaRnaToHelm : OK
346
346
  Test result : Success : 1 : Bio.converters.testFastaGapsToHelm : OK
347
347
  Test result : Success : 1 : Bio.converters.testSeparatorPtToFasta : OK
348
348
  Test result : Success : 0 : Bio.converters.testSeparatorDnaToFasta : OK
349
349
  Test result : Success : 0 : Bio.converters.testSeparatorRnaToFasta : OK
350
- Test result : Success : 2 : Bio.converters.testSeparatorGapsToFasta : OK
351
- Test result : Success : 0 : Bio.converters.testSeparatorPtToHelm : OK
350
+ Test result : Success : 0 : Bio.converters.testSeparatorGapsToFasta : OK
351
+ Test result : Success : 1 : Bio.converters.testSeparatorPtToHelm : OK
352
352
  Test result : Success : 0 : Bio.converters.testSeparatorDnaToHelm : OK
353
353
  Test result : Success : 0 : Bio.converters.testSeparatorRnaToHelm : OK
354
354
  Test result : Success : 1 : Bio.converters.testSeparatorGapsToHelm : OK
355
- Test result : Success : 0 : Bio.converters.testHelmDnaToFasta : OK
356
- Test result : Success : 0 : Bio.converters.testHelmRnaToFasta : OK
357
- Test result : Success : 1 : Bio.converters.testHelmPtToFasta : OK
358
- Test result : Success : 1 : Bio.converters.testHelmDnaToSeparator : OK
359
- Test result : Success : 0 : Bio.converters.testHelmRnaToSeparator : OK
355
+ Test result : Success : 1 : Bio.converters.testHelmDnaToFasta : OK
356
+ Test result : Success : 1 : Bio.converters.testHelmRnaToFasta : OK
357
+ Test result : Success : 0 : Bio.converters.testHelmPtToFasta : OK
358
+ Test result : Success : 0 : Bio.converters.testHelmDnaToSeparator : OK
359
+ Test result : Success : 1 : Bio.converters.testHelmRnaToSeparator : OK
360
360
  Test result : Success : 0 : Bio.converters.testHelmPtToSeparator : OK
361
- Test result : Success : 2 : Bio.converters.testHelmLoneRibose : OK
362
- Test result : Success : 3 : Bio.converters.testHelmLoneDeoxyribose : OK
361
+ Test result : Success : 1 : Bio.converters.testHelmLoneRibose : OK
362
+ Test result : Success : 2 : Bio.converters.testHelmLoneDeoxyribose : OK
363
363
  Test result : Success : 2 : Bio.converters.testHelmLonePhosphorus : OK
364
364
  Test result : Success : 0 : Bio.fastaFileHandler.testNormalFormatting : OK
365
365
  Test result : Success : 0 : Bio.fastaFileHandler.testExtraSpaces : OK
366
366
  Test result : Success : 0 : Bio.fastaFileHandler.testExtraNewlines : OK
367
- Test result : Success : 92 : Bio.WebLogo-positions.allPositions : OK
368
- Test result : Success : 106 : Bio.WebLogo-positions.positions with shrinkEmptyTail option true (filterd) : OK
369
- Test result : Success : 89 : Bio.WebLogo-positions.positions with skipEmptyPositions option : OK
370
- Test result : Success : 3 : Bio.checkInputColumn.testMsaPos : OK
371
- Test result : Success : 2 : Bio.checkInputColumn.testMsaNegHelm : OK
372
- Test result : Success : 1 : Bio.checkInputColumn.testMsaNegUN : OK
373
- Test result : Success : 7 : Bio.checkInputColumn.testGetActionFunctionMeta : OK
367
+ Test result : Success : 94 : Bio.WebLogo-positions.allPositions : OK
368
+ Test result : Success : 151 : Bio.WebLogo-positions.positions with shrinkEmptyTail option true (filterd) : OK
369
+ Test result : Success : 104 : Bio.WebLogo-positions.positions with skipEmptyPositions option : OK
370
+ Test result : Success : 14 : Bio.checkInputColumn.testMsaPos : OK
371
+ Test result : Success : 4 : Bio.checkInputColumn.testMsaNegHelm : OK
372
+ Test result : Success : 3 : Bio.checkInputColumn.testMsaNegUN : OK
373
+ Test result : Success : 1 : Bio.checkInputColumn.testGetActionFunctionMeta : OK
374
374
  </pre></div></div></div></div></body></html>