@datagrok/bio 1.9.1 → 1.10.2

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Files changed (11) hide show
  1. package/detectors.js +13 -3
  2. package/dist/package-test.js +164 -105
  3. package/dist/package.js +144 -87
  4. package/package.json +3 -2
  5. package/src/package.ts +10 -33
  6. package/src/tests/detectors-test.ts +21 -18
  7. package/src/tests/test-sequnces-generators.ts +27 -4
  8. package/src/utils/atomic-works.ts +1 -1
  9. package/src/utils/cell-renderer.ts +18 -11
  10. package/src/utils/sequence-space.ts +5 -3
  11. package/{test-Bio-fe2f9610d4ed-cdfe422f.html → test-Bio-eb4783c07294-0aa1538b.html} +2 -2
package/detectors.js CHANGED
@@ -52,9 +52,14 @@ class BioPackageDetectors extends DG.Package {
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  !(col.categories.length == 1 && !col.categories[0]) && // TODO: Remove with tests for single empty category value
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  DG.Detector.sampleCategories(col, (s) => BioPackageDetectors.isHelm(s), 1)
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  ) {
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- const statsAsHelm = BioPackageDetectors.getStats(col, 5, BioPackageDetectors.splitterAsHelm);
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+ const statsAsHelm = BioPackageDetectors.getStats(col, 2, BioPackageDetectors.splitterAsHelm);
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  col.setTag(DG.TAGS.UNITS, 'helm');
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- col.setTag('alphabetSize', statsAsHelm.freq.length);
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+
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+ const alphabetSize = Object.keys(statsAsHelm.freq).length;
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+ const alphabetIsMultichar = Object.keys(statsAsHelm.freq).some((m) => m.length > 1);
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+ col.setTag('.alphabetSize', alphabetSize.toString());
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+ col.setTag('.alphabetIsMultichar', alphabetIsMultichar ? 'true' : 'false');
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+
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  return DG.SEMTYPE.MACROMOLECULE;
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  }
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@@ -125,7 +130,12 @@ class BioPackageDetectors extends DG.Package {
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  col.setTag('aligned', seqType);
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  col.setTag('alphabet', alphabet);
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  if (separator) col.setTag('separator', separator);
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- if (alphabet === 'UN') col.setTag('alphabetSize', stats.freq.length);
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+ if (alphabet === 'UN') {
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+ const alphabetSize = Object.keys(stats.freq).length;
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+ const alphabetIsMultichar = Object.keys(stats.freq).some((m) => m.length > 1);
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+ col.setTag('.alphabetSize', alphabetSize.toString());
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+ col.setTag('.alphabetIsMultichar', alphabetIsMultichar ? 'true' : 'false');
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+ }
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  return DG.SEMTYPE.MACROMOLECULE;
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  }
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  }