@datagrok/bio 1.8.1 → 1.8.2
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/package-test.js +538 -46
- package/dist/package.js +481 -15
- package/dist/vendors-node_modules_datagrok-libraries_ml_src_workers_dimensionality-reducer_js.js +26 -10
- package/package.json +4 -4
- package/src/tests/detectors-test.ts +2 -2
- package/{test-Bio-dc07f068a0b2-cdad4cfb.html → test-Bio-dc07f068a0b2-3cd5a505.html} +5 -8
package/package.json
CHANGED
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@@ -5,7 +5,7 @@
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"name": "Leonid Stolbov",
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"email": "lstolbov@datagrok.ai"
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},
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"version": "1.8.
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"version": "1.8.2",
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"description": "Bio is a [package](https://datagrok.ai/help/develop/develop#packages) for the [Datagrok](https://datagrok.ai) platform",
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"repository": {
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"type": "git",
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@@ -14,9 +14,9 @@
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},
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"dependencies": {
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"@biowasm/aioli": ">=2.4.0",
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"@datagrok-libraries/bio": "^3.0
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"@datagrok-libraries/ml": "^3.0
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"@datagrok-libraries/utils": "^1.
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"@datagrok-libraries/bio": "^3.1.0",
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"@datagrok-libraries/ml": "^3.1.0",
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"@datagrok-libraries/utils": "^1.6.2",
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"cash-dom": "latest",
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"datagrok-api": "^1.5.5",
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"dayjs": "^1.11.4",
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@@ -281,7 +281,7 @@ MWRSWY-CKHP
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});
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test('samplesHelmCsvHELM', async () => {
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await _testPos(readSamples(Samples.helmCsv), 'HELM', '
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await _testPos(readSamples(Samples.helmCsv), 'HELM', 'helm', null, null, null);
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});
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test('samplesHelmCsvNegativeActivity', async () => {
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@@ -297,7 +297,7 @@ MWRSWY-CKHP
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await _testNeg(readSamples(Samples.testHelmCsv), 'Test type');
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});
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test('samplesTestHelmPositiveHelmString', async () => {
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await _testPos(readSamples(Samples.testHelmCsv), 'HELM string', '
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await _testPos(readSamples(Samples.testHelmCsv), 'HELM string', 'helm', null, null, null);
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});
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test('samplesTestHelmNegativeValid', async () => {
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await _testNeg(readSamples(Samples.testHelmCsv), 'Valid?');
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@@ -1,4 +1,4 @@
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<html><head><meta charset="utf-8"/><title>Bio Test Report. Datagrok version datagrok/datagrok:latest SHA=dc07f068a0b2. Commit
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<html><head><meta charset="utf-8"/><title>Bio Test Report. Datagrok version datagrok/datagrok:latest SHA=dc07f068a0b2. Commit 3cd5a505.</title><style type="text/css">html,
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body {
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font-family: Arial, Helvetica, sans-serif;
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font-size: 1rem;
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@@ -229,13 +229,7 @@ header {
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font-size: 1rem;
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padding: 0 0.5rem;
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}
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</style></head><body><div id="jesthtml-content"><header><h1 id="title">Bio Test Report. Datagrok version datagrok/datagrok:latest SHA=dc07f068a0b2. Commit
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Test result : Failed : Bio.detectors.samplesTestHelmPositiveHelmString : Error: Expected "HELM", got "helm"
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at /home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:67:20
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at Generator.next (<anonymous>)
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at fulfilled (/home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:31:58)
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at processTicksAndRejections (internal/process/task_queues.js:97:5)</pre></div></div></div><div class="suite-consolelog"><div class="suite-consolelog-header">Console Log</div><div class="suite-consolelog-item"><pre class="suite-consolelog-item-origin"> at Object.<anonymous> (/home/runner/work/public/public/packages/Bio/src/__jest__/test-node.ts:63:11)
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</style></head><body><div id="jesthtml-content"><header><h1 id="title">Bio Test Report. Datagrok version datagrok/datagrok:latest SHA=dc07f068a0b2. Commit 3cd5a505.</h1></header><div id="metadata-container"><div id="timestamp">Started: 2022-08-22 15:41:12</div><div id="summary"><div id="suite-summary"><div class="summary-total">Suites (1)</div><div class="summary-passed">1 passed</div><div class="summary-failed summary-empty">0 failed</div><div class="summary-pending summary-empty">0 pending</div></div><div id="test-summary"><div class="summary-total">Tests (1)</div><div class="summary-passed">1 passed</div><div class="summary-failed summary-empty">0 failed</div><div class="summary-pending summary-empty">0 pending</div></div></div></div><div id="suite-1" class="suite-container"><div class="suite-info"><div class="suite-path">/home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts</div><div class="suite-time warn">54.715s</div></div><div class="suite-tests"><div class="test-result passed"><div class="test-info"><div class="test-suitename"> </div><div class="test-title">TEST</div><div class="test-status">passed</div><div class="test-duration">34.198s</div></div></div></div><div class="suite-consolelog"><div class="suite-consolelog-header">Console Log</div><div class="suite-consolelog-item"><pre class="suite-consolelog-item-origin"> at Object.<anonymous> (/home/runner/work/public/public/packages/Bio/src/__jest__/test-node.ts:63:11)
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at Generator.next (<anonymous>)
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at fulfilled (/home/runner/work/public/public/packages/Bio/src/__jest__/test-node.ts:28:58)
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at processTicksAndRejections (internal/process/task_queues.js:97:5)</pre><pre class="suite-consolelog-item-message">Using web root: http://localhost:8080</pre></div><div class="suite-consolelog-item"><pre class="suite-consolelog-item-origin"> at /home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:40:11
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@@ -248,6 +242,7 @@ Test result : Failed : Bio.detectors.samplesTestHelmPositiveHelmString : Error:
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at new Promise (<anonymous>)</pre><pre class="suite-consolelog-item-message">Testing Bio package</pre></div><div class="suite-consolelog-item"><pre class="suite-consolelog-item-origin"> at /home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:65:11
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at Generator.next (<anonymous>)
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at fulfilled (/home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:31:58)
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at runMicrotasks (<anonymous>)
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at processTicksAndRejections (internal/process/task_queues.js:97:5)</pre><pre class="suite-consolelog-item-message">Test result : Success : Bio.WebLogo.testGetStats : OK
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Test result : Success : Bio.WebLogo.testGetAlphabetSimilarity : OK
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Test result : Success : Bio.WebLogo.testPickupPaletteN1 : OK
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Test result : Success : Bio.detectors.samplesMsaComplexNegativeActivity : OK
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Test result : Success : Bio.detectors.samplesIdCsvNegativeID : OK
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Test result : Success : Bio.detectors.samplesSarSmallCsvNegativeSmiles : OK
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Test result : Success : Bio.detectors.samplesHelmCsvHELM : OK
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Test result : Success : Bio.detectors.samplesHelmCsvNegativeActivity : OK
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Test result : Success : Bio.detectors.samplesTestHelmNegativeID : OK
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Test result : Success : Bio.detectors.samplesTestHelmNegativeTestType : OK
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Test result : Success : Bio.detectors.samplesTestHelmPositiveHelmString : OK
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Test result : Success : Bio.detectors.samplesTestHelmNegativeValid : OK
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Test result : Success : Bio.detectors.samplesTestHelmNegativeMolWeight : OK
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Test result : Success : Bio.detectors.samplesTestHelmNegativeMolFormula : OK
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