@datagrok/bio 1.7.6 → 1.7.9
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/detectors.js +7 -6
- package/dist/package-test.js +205 -105
- package/dist/package.js +164 -93
- package/files/tests/testActivityCliffs.csv +311 -0
- package/package.json +2 -2
- package/src/__jest__/remote.test.ts +2 -2
- package/src/__jest__/test-node.ts +1 -1
- package/src/package.ts +2 -1
- package/src/tests/convert-test.ts +15 -14
- package/src/tests/detectors-test.ts +8 -2
- package/src/tests/splitters-test.ts +26 -0
- package/src/utils/convert.ts +15 -3
- package/src/utils/multiple-sequence-alignment.ts +3 -2
- package/src/utils/utils.ts +10 -8
- package/test-Bio-34f75e5127b8-0a8a5821.html +339 -0
- package/test-Bio-34f75e5127b8-c46c3f48.html +0 -256
|
@@ -0,0 +1,339 @@
|
|
|
1
|
+
<html><head><meta charset="utf-8"/><title>Bio Test Report. Datagrok version datagrok/datagrok:latest SHA=34f75e5127b8. Commit 0a8a5821.</title><style type="text/css">html,
|
|
2
|
+
body {
|
|
3
|
+
font-family: Arial, Helvetica, sans-serif;
|
|
4
|
+
font-size: 1rem;
|
|
5
|
+
margin: 0;
|
|
6
|
+
padding: 0;
|
|
7
|
+
color: #333;
|
|
8
|
+
}
|
|
9
|
+
body {
|
|
10
|
+
padding: 2rem 1rem;
|
|
11
|
+
font-size: 0.85rem;
|
|
12
|
+
}
|
|
13
|
+
#jesthtml-content {
|
|
14
|
+
margin: 0 auto;
|
|
15
|
+
max-width: 70rem;
|
|
16
|
+
}
|
|
17
|
+
header {
|
|
18
|
+
display: flex;
|
|
19
|
+
align-items: center;
|
|
20
|
+
}
|
|
21
|
+
#title {
|
|
22
|
+
margin: 0;
|
|
23
|
+
flex-grow: 1;
|
|
24
|
+
}
|
|
25
|
+
#logo {
|
|
26
|
+
height: 4rem;
|
|
27
|
+
}
|
|
28
|
+
#timestamp {
|
|
29
|
+
color: #777;
|
|
30
|
+
margin-top: 0.5rem;
|
|
31
|
+
}
|
|
32
|
+
|
|
33
|
+
/** SUMMARY */
|
|
34
|
+
#summary {
|
|
35
|
+
color: #333;
|
|
36
|
+
margin: 2rem 0;
|
|
37
|
+
display: flex;
|
|
38
|
+
font-family: monospace;
|
|
39
|
+
font-size: 1rem;
|
|
40
|
+
}
|
|
41
|
+
#summary > div {
|
|
42
|
+
margin-right: 2rem;
|
|
43
|
+
background: #eee;
|
|
44
|
+
padding: 1rem;
|
|
45
|
+
min-width: 15rem;
|
|
46
|
+
}
|
|
47
|
+
#summary > div:last-child {
|
|
48
|
+
margin-right: 0;
|
|
49
|
+
}
|
|
50
|
+
@media only screen and (max-width: 720px) {
|
|
51
|
+
#summary {
|
|
52
|
+
flex-direction: column;
|
|
53
|
+
}
|
|
54
|
+
#summary > div {
|
|
55
|
+
margin-right: 0;
|
|
56
|
+
margin-top: 2rem;
|
|
57
|
+
}
|
|
58
|
+
#summary > div:first-child {
|
|
59
|
+
margin-top: 0;
|
|
60
|
+
}
|
|
61
|
+
}
|
|
62
|
+
|
|
63
|
+
.summary-total {
|
|
64
|
+
font-weight: bold;
|
|
65
|
+
margin-bottom: 0.5rem;
|
|
66
|
+
}
|
|
67
|
+
.summary-passed {
|
|
68
|
+
color: #4f8a10;
|
|
69
|
+
border-left: 0.4rem solid #4f8a10;
|
|
70
|
+
padding-left: 0.5rem;
|
|
71
|
+
}
|
|
72
|
+
.summary-failed,
|
|
73
|
+
.summary-obsolete-snapshots {
|
|
74
|
+
color: #d8000c;
|
|
75
|
+
border-left: 0.4rem solid #d8000c;
|
|
76
|
+
padding-left: 0.5rem;
|
|
77
|
+
}
|
|
78
|
+
.summary-pending {
|
|
79
|
+
color: #9f6000;
|
|
80
|
+
border-left: 0.4rem solid #9f6000;
|
|
81
|
+
padding-left: 0.5rem;
|
|
82
|
+
}
|
|
83
|
+
.summary-empty {
|
|
84
|
+
color: #999;
|
|
85
|
+
border-left: 0.4rem solid #999;
|
|
86
|
+
}
|
|
87
|
+
|
|
88
|
+
.test-result {
|
|
89
|
+
padding: 1rem;
|
|
90
|
+
margin-bottom: 0.25rem;
|
|
91
|
+
}
|
|
92
|
+
.test-result:last-child {
|
|
93
|
+
border: 0;
|
|
94
|
+
}
|
|
95
|
+
.test-result.passed {
|
|
96
|
+
background-color: #dff2bf;
|
|
97
|
+
color: #4f8a10;
|
|
98
|
+
}
|
|
99
|
+
.test-result.failed {
|
|
100
|
+
background-color: #ffbaba;
|
|
101
|
+
color: #d8000c;
|
|
102
|
+
}
|
|
103
|
+
.test-result.pending {
|
|
104
|
+
background-color: #ffdf61;
|
|
105
|
+
color: #9f6000;
|
|
106
|
+
}
|
|
107
|
+
|
|
108
|
+
.test-info {
|
|
109
|
+
display: flex;
|
|
110
|
+
justify-content: space-between;
|
|
111
|
+
}
|
|
112
|
+
.test-suitename {
|
|
113
|
+
width: 20%;
|
|
114
|
+
text-align: left;
|
|
115
|
+
font-weight: bold;
|
|
116
|
+
word-break: break-word;
|
|
117
|
+
}
|
|
118
|
+
.test-title {
|
|
119
|
+
width: 40%;
|
|
120
|
+
text-align: left;
|
|
121
|
+
font-style: italic;
|
|
122
|
+
}
|
|
123
|
+
.test-status {
|
|
124
|
+
width: 20%;
|
|
125
|
+
text-align: right;
|
|
126
|
+
}
|
|
127
|
+
.test-duration {
|
|
128
|
+
width: 10%;
|
|
129
|
+
text-align: right;
|
|
130
|
+
font-size: 0.75rem;
|
|
131
|
+
}
|
|
132
|
+
|
|
133
|
+
.failureMessages {
|
|
134
|
+
padding: 0 1rem;
|
|
135
|
+
margin-top: 1rem;
|
|
136
|
+
border-top: 1px dashed #d8000c;
|
|
137
|
+
}
|
|
138
|
+
.failureMessages.suiteFailure {
|
|
139
|
+
border-top: none;
|
|
140
|
+
}
|
|
141
|
+
.failureMsg {
|
|
142
|
+
white-space: pre-wrap;
|
|
143
|
+
white-space: -moz-pre-wrap;
|
|
144
|
+
white-space: -pre-wrap;
|
|
145
|
+
white-space: -o-pre-wrap;
|
|
146
|
+
word-wrap: break-word;
|
|
147
|
+
}
|
|
148
|
+
|
|
149
|
+
.suite-container {
|
|
150
|
+
margin-bottom: 2rem;
|
|
151
|
+
}
|
|
152
|
+
.suite-info {
|
|
153
|
+
padding: 1rem;
|
|
154
|
+
background-color: #eee;
|
|
155
|
+
color: #777;
|
|
156
|
+
display: flex;
|
|
157
|
+
align-items: center;
|
|
158
|
+
margin-bottom: 0.25rem;
|
|
159
|
+
}
|
|
160
|
+
.suite-info .suite-path {
|
|
161
|
+
word-break: break-all;
|
|
162
|
+
flex-grow: 1;
|
|
163
|
+
font-family: monospace;
|
|
164
|
+
font-size: 1rem;
|
|
165
|
+
}
|
|
166
|
+
.suite-info .suite-time {
|
|
167
|
+
margin-left: 0.5rem;
|
|
168
|
+
padding: 0.2rem 0.3rem;
|
|
169
|
+
font-size: 0.75rem;
|
|
170
|
+
}
|
|
171
|
+
.suite-info .suite-time.warn {
|
|
172
|
+
background-color: #d8000c;
|
|
173
|
+
color: #fff;
|
|
174
|
+
}
|
|
175
|
+
|
|
176
|
+
/* CONSOLE LOGS */
|
|
177
|
+
.suite-consolelog {
|
|
178
|
+
margin-bottom: 0.25rem;
|
|
179
|
+
padding: 1rem;
|
|
180
|
+
background-color: #efefef;
|
|
181
|
+
}
|
|
182
|
+
.suite-consolelog-header {
|
|
183
|
+
font-weight: bold;
|
|
184
|
+
}
|
|
185
|
+
.suite-consolelog-item {
|
|
186
|
+
padding: 0.5rem;
|
|
187
|
+
}
|
|
188
|
+
.suite-consolelog-item pre {
|
|
189
|
+
margin: 0.5rem 0;
|
|
190
|
+
white-space: pre-wrap;
|
|
191
|
+
white-space: -moz-pre-wrap;
|
|
192
|
+
white-space: -pre-wrap;
|
|
193
|
+
white-space: -o-pre-wrap;
|
|
194
|
+
word-wrap: break-word;
|
|
195
|
+
}
|
|
196
|
+
.suite-consolelog-item-origin {
|
|
197
|
+
color: #777;
|
|
198
|
+
font-weight: bold;
|
|
199
|
+
}
|
|
200
|
+
.suite-consolelog-item-message {
|
|
201
|
+
color: #000;
|
|
202
|
+
font-size: 1rem;
|
|
203
|
+
padding: 0 0.5rem;
|
|
204
|
+
}
|
|
205
|
+
|
|
206
|
+
/* OBSOLETE SNAPSHOTS */
|
|
207
|
+
.suite-obsolete-snapshots {
|
|
208
|
+
margin-bottom: 0.25rem;
|
|
209
|
+
padding: 1rem;
|
|
210
|
+
background-color: #ffbaba;
|
|
211
|
+
color: #d8000c;
|
|
212
|
+
}
|
|
213
|
+
.suite-obsolete-snapshots-header {
|
|
214
|
+
font-weight: bold;
|
|
215
|
+
}
|
|
216
|
+
.suite-obsolete-snapshots-item {
|
|
217
|
+
padding: 0.5rem;
|
|
218
|
+
}
|
|
219
|
+
.suite-obsolete-snapshots-item pre {
|
|
220
|
+
margin: 0.5rem 0;
|
|
221
|
+
white-space: pre-wrap;
|
|
222
|
+
white-space: -moz-pre-wrap;
|
|
223
|
+
white-space: -pre-wrap;
|
|
224
|
+
white-space: -o-pre-wrap;
|
|
225
|
+
word-wrap: break-word;
|
|
226
|
+
}
|
|
227
|
+
.suite-obsolete-snapshots-item-message {
|
|
228
|
+
color: #000;
|
|
229
|
+
font-size: 1rem;
|
|
230
|
+
padding: 0 0.5rem;
|
|
231
|
+
}
|
|
232
|
+
</style></head><body><div id="jesthtml-content"><header><h1 id="title">Bio Test Report. Datagrok version datagrok/datagrok:latest SHA=34f75e5127b8. Commit 0a8a5821.</h1></header><div id="metadata-container"><div id="timestamp">Started: 2022-07-19 13:18:04</div><div id="summary"><div id="suite-summary"><div class="summary-total">Suites (1)</div><div class="summary-passed summary-empty">0 passed</div><div class="summary-failed">1 failed</div><div class="summary-pending summary-empty">0 pending</div></div><div id="test-summary"><div class="summary-total">Tests (1)</div><div class="summary-passed summary-empty">0 passed</div><div class="summary-failed">1 failed</div><div class="summary-pending summary-empty">0 pending</div></div></div></div><div id="suite-1" class="suite-container"><div class="suite-info"><div class="suite-path">/home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts</div><div class="suite-time warn">189.946s</div></div><div class="suite-tests"><div class="test-result failed"><div class="test-info"><div class="test-suitename"> </div><div class="test-title">TEST</div><div class="test-status">failed</div><div class="test-duration">177.683s</div></div><div class="failureMessages"> <pre class="failureMsg">Error: Test result : Bio.MSA.is_correct : TypeError: Cannot read properties of undefined (reading 'split')
|
|
233
|
+
Test result : Bio.splitters.testHelm1 : Error: Expected R(U)P at position 0, got U
|
|
234
|
+
Test result : Bio.splitters.testHelm2 : Error: Expected R(U)P at position 1, got U
|
|
235
|
+
Test result : Bio.splitters.testHelm3 : Error: Expected R(U) at position 1, got U)
|
|
236
|
+
|
|
237
|
+
at /home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:67:20
|
|
238
|
+
at Generator.next (<anonymous>)
|
|
239
|
+
at fulfilled (/home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:31:58)
|
|
240
|
+
at runMicrotasks (<anonymous>)
|
|
241
|
+
at processTicksAndRejections (internal/process/task_queues.js:97:5)</pre></div></div></div><div class="suite-consolelog"><div class="suite-consolelog-header">Console Log</div><div class="suite-consolelog-item"><pre class="suite-consolelog-item-origin"> at Object.<anonymous> (/home/runner/work/public/public/packages/Bio/src/__jest__/test-node.ts:63:11)
|
|
242
|
+
at Generator.next (<anonymous>)
|
|
243
|
+
at fulfilled (/home/runner/work/public/public/packages/Bio/src/__jest__/test-node.ts:28:58)
|
|
244
|
+
at processTicksAndRejections (internal/process/task_queues.js:97:5)</pre><pre class="suite-consolelog-item-message">Using web root: http://localhost:8080</pre></div><div class="suite-consolelog-item"><pre class="suite-consolelog-item-origin"> at /home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:40:11
|
|
245
|
+
at Generator.next (<anonymous>)
|
|
246
|
+
at /home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:34:71
|
|
247
|
+
at new Promise (<anonymous>)
|
|
248
|
+
at Object.<anonymous>.__awaiter (/home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:30:12)
|
|
249
|
+
at Object.<anonymous> (/home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:38:23)
|
|
250
|
+
at Promise.then.completed (/home/runner/work/public/public/packages/Bio/node_modules/jest-circus/build/utils.js:391:28)
|
|
251
|
+
at new Promise (<anonymous>)</pre><pre class="suite-consolelog-item-message">Testing Bio package</pre></div><div class="suite-consolelog-item"><pre class="suite-consolelog-item-origin"> at /home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:65:11
|
|
252
|
+
at Generator.next (<anonymous>)
|
|
253
|
+
at fulfilled (/home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:31:58)
|
|
254
|
+
at runMicrotasks (<anonymous>)
|
|
255
|
+
at processTicksAndRejections (internal/process/task_queues.js:97:5)</pre><pre class="suite-consolelog-item-message">Test result : Bio.WebLogo.testGetStats : OK
|
|
256
|
+
Test result : Bio.WebLogo.testGetAlphabetSimilarity : OK
|
|
257
|
+
Test result : Bio.WebLogo.testPickupPaletteN1 : OK
|
|
258
|
+
Test result : Bio.WebLogo.testPickupPaletteN1e : OK
|
|
259
|
+
Test result : Bio.WebLogo.testPickupPaletteAA1 : OK
|
|
260
|
+
Test result : Bio.WebLogo.testPickupPaletteX : OK
|
|
261
|
+
Test result : Bio.WebLogo.monomerToText.longMonomerSingle : OK
|
|
262
|
+
Test result : Bio.WebLogo.monomerToText.longMonomerShort : OK
|
|
263
|
+
Test result : Bio.WebLogo.monomerToText.longMonomerLong56 : OK
|
|
264
|
+
Test result : Bio.WebLogo.monomerToText.longMonomerComplexFirstPartShort : OK
|
|
265
|
+
Test result : Bio.WebLogo.monomerToText.longMonomerComplexFirstPartLong56 : OK
|
|
266
|
+
Test result : Bio.Palettes.testPaletteN : OK
|
|
267
|
+
Test result : Bio.Palettes.testPaletteAA : OK
|
|
268
|
+
Test result : Bio.detectors.Negative1 : OK
|
|
269
|
+
Test result : Bio.detectors.Negative2 : OK
|
|
270
|
+
Test result : Bio.detectors.Negative3 : OK
|
|
271
|
+
Test result : Bio.detectors.NegativeSmiles : OK
|
|
272
|
+
Test result : Bio.detectors.Dna1 : OK
|
|
273
|
+
Test result : Bio.detectors.Rna1 : OK
|
|
274
|
+
Test result : Bio.detectors.AA1 : OK
|
|
275
|
+
Test result : Bio.detectors.MsaDna1 : OK
|
|
276
|
+
Test result : Bio.detectors.MsaAA1 : OK
|
|
277
|
+
Test result : Bio.detectors.SepDna : OK
|
|
278
|
+
Test result : Bio.detectors.SepRna : OK
|
|
279
|
+
Test result : Bio.detectors.SepPt : OK
|
|
280
|
+
Test result : Bio.detectors.SepUn1 : OK
|
|
281
|
+
Test result : Bio.detectors.SepUn2 : OK
|
|
282
|
+
Test result : Bio.detectors.SepMsaN1 : OK
|
|
283
|
+
Test result : Bio.detectors.SamplesFastaCsvPt : OK
|
|
284
|
+
Test result : Bio.detectors.SamplesFastaCsvNegativeEntry : OK
|
|
285
|
+
Test result : Bio.detectors.SamplesFastaCsvNegativeLength : OK
|
|
286
|
+
Test result : Bio.detectors.SamplesFastaCsvNegativeUniProtKB : OK
|
|
287
|
+
Test result : Bio.detectors.SamplesFastaFastaPt : OK
|
|
288
|
+
Test result : Bio.detectors.samplesPeptidesComplexNegativeID : OK
|
|
289
|
+
Test result : Bio.detectors.SamplesPeptidesComplexNegativeMeasured : OK
|
|
290
|
+
Test result : Bio.detectors.SamplesPeptidesComplexNegativeValue : OK
|
|
291
|
+
Test result : Bio.detectors.samplesMsaComplexUn : OK
|
|
292
|
+
Test result : Bio.detectors.samplesMsaComplexNegativeActivity : OK
|
|
293
|
+
Test result : Bio.detectors.samplesIdCsvNegativeID : OK
|
|
294
|
+
Test result : Bio.detectors.samplesSarSmallCsvNegativeSmiles : OK
|
|
295
|
+
Test result : Bio.detectors.samplesHelmCsvHELM : OK
|
|
296
|
+
Test result : Bio.detectors.samplesHelmCsvNegativeActivity : OK
|
|
297
|
+
Test result : Bio.detectors.samplesTestHelmNegativeID : OK
|
|
298
|
+
Test result : Bio.detectors.samplesTestHelmNegativeTestType : OK
|
|
299
|
+
Test result : Bio.detectors.samplesTestHelmPositiveHelmString : OK
|
|
300
|
+
Test result : Bio.detectors.samplesTestHelmNegativeValid : OK
|
|
301
|
+
Test result : Bio.detectors.samplesTestHelmNegativeMolWeight : OK
|
|
302
|
+
Test result : Bio.detectors.samplesTestHelmNegativeMolFormula : OK
|
|
303
|
+
Test result : Bio.detectors.samplesTestHelmNegativeSmiles : OK
|
|
304
|
+
Test result : Bio.detectors.samplesTestDemogNegativeAll : OK
|
|
305
|
+
Test result : Bio.detectors.samplesTestSmiles2NegativeSmiles : OK
|
|
306
|
+
Test result : Bio.detectors.samplesTestActivityCliffsNegativeSmiles : OK
|
|
307
|
+
Test result : Bio.detectors.samplesFastaPtPosSequence : OK
|
|
308
|
+
Test result : Bio.detectors.samplesTestCerealNegativeCerealName : OK
|
|
309
|
+
Test result : Bio.MSA.test_table.is_not_empty : OK
|
|
310
|
+
Test result : Bio.sequenceSpace.sequenceSpaceOpens : OK
|
|
311
|
+
Test result : Bio.activityCliffs.activityCliffsOpen : OK
|
|
312
|
+
Test result : Bio.splitters.helm1 : OK
|
|
313
|
+
Test result : Bio.splitters.helm2 : OK
|
|
314
|
+
Test result : Bio.splitters.helm3-multichar : OK
|
|
315
|
+
Test result : Bio.renderers.afterMsa : OK
|
|
316
|
+
Test result : Bio.renderers.afterConvert : OK
|
|
317
|
+
Test result : Bio.converters.testFastaPtToSeparator : OK
|
|
318
|
+
Test result : Bio.converters.testFastaDnaToSeparator : OK
|
|
319
|
+
Test result : Bio.converters.testFastaRnaToSeparator : OK
|
|
320
|
+
Test result : Bio.converters.testFastaGapsToSeparator : OK
|
|
321
|
+
Test result : Bio.converters.testFastaPtToHelm : OK
|
|
322
|
+
Test result : Bio.converters.testFastaDnaToHelm : OK
|
|
323
|
+
Test result : Bio.converters.testFastaRnaToHelm : OK
|
|
324
|
+
Test result : Bio.converters.testFastaGapsToHelm : OK
|
|
325
|
+
Test result : Bio.converters.testSeparatorPtToFasta : OK
|
|
326
|
+
Test result : Bio.converters.testSeparatorDnaToFasta : OK
|
|
327
|
+
Test result : Bio.converters.testSeparatorRnaToFasta : OK
|
|
328
|
+
Test result : Bio.converters.testSeparatorGapsToFasta : OK
|
|
329
|
+
Test result : Bio.converters.testSeparatorPtToHelm : OK
|
|
330
|
+
Test result : Bio.converters.testSeparatorDnaToHelm : OK
|
|
331
|
+
Test result : Bio.converters.testSeparatorRnaToHelm : OK
|
|
332
|
+
Test result : Bio.converters.testSeparatorGapsToHelm : OK
|
|
333
|
+
Test result : Bio.converters.HelmDnaToFasta : OK
|
|
334
|
+
Test result : Bio.converters.HelmRnaToFasta : OK
|
|
335
|
+
Test result : Bio.converters.HelmPtToFasta : OK
|
|
336
|
+
Test result : Bio.converters.HelmDnaToSeparator : OK
|
|
337
|
+
Test result : Bio.converters.HelmRnaToSeparator : OK
|
|
338
|
+
Test result : Bio.converters.HelmPtToSeparator : OK
|
|
339
|
+
</pre></div></div></div></div></body></html>
|
|
@@ -1,256 +0,0 @@
|
|
|
1
|
-
<html><head><meta charset="utf-8"/><title>Bio Test Report. Datagrok version datagrok/datagrok:latest SHA=34f75e5127b8. Commit c46c3f48.</title><style type="text/css">html,
|
|
2
|
-
body {
|
|
3
|
-
font-family: Arial, Helvetica, sans-serif;
|
|
4
|
-
font-size: 1rem;
|
|
5
|
-
margin: 0;
|
|
6
|
-
padding: 0;
|
|
7
|
-
color: #333;
|
|
8
|
-
}
|
|
9
|
-
body {
|
|
10
|
-
padding: 2rem 1rem;
|
|
11
|
-
font-size: 0.85rem;
|
|
12
|
-
}
|
|
13
|
-
#jesthtml-content {
|
|
14
|
-
margin: 0 auto;
|
|
15
|
-
max-width: 70rem;
|
|
16
|
-
}
|
|
17
|
-
header {
|
|
18
|
-
display: flex;
|
|
19
|
-
align-items: center;
|
|
20
|
-
}
|
|
21
|
-
#title {
|
|
22
|
-
margin: 0;
|
|
23
|
-
flex-grow: 1;
|
|
24
|
-
}
|
|
25
|
-
#logo {
|
|
26
|
-
height: 4rem;
|
|
27
|
-
}
|
|
28
|
-
#timestamp {
|
|
29
|
-
color: #777;
|
|
30
|
-
margin-top: 0.5rem;
|
|
31
|
-
}
|
|
32
|
-
|
|
33
|
-
/** SUMMARY */
|
|
34
|
-
#summary {
|
|
35
|
-
color: #333;
|
|
36
|
-
margin: 2rem 0;
|
|
37
|
-
display: flex;
|
|
38
|
-
font-family: monospace;
|
|
39
|
-
font-size: 1rem;
|
|
40
|
-
}
|
|
41
|
-
#summary > div {
|
|
42
|
-
margin-right: 2rem;
|
|
43
|
-
background: #eee;
|
|
44
|
-
padding: 1rem;
|
|
45
|
-
min-width: 15rem;
|
|
46
|
-
}
|
|
47
|
-
#summary > div:last-child {
|
|
48
|
-
margin-right: 0;
|
|
49
|
-
}
|
|
50
|
-
@media only screen and (max-width: 720px) {
|
|
51
|
-
#summary {
|
|
52
|
-
flex-direction: column;
|
|
53
|
-
}
|
|
54
|
-
#summary > div {
|
|
55
|
-
margin-right: 0;
|
|
56
|
-
margin-top: 2rem;
|
|
57
|
-
}
|
|
58
|
-
#summary > div:first-child {
|
|
59
|
-
margin-top: 0;
|
|
60
|
-
}
|
|
61
|
-
}
|
|
62
|
-
|
|
63
|
-
.summary-total {
|
|
64
|
-
font-weight: bold;
|
|
65
|
-
margin-bottom: 0.5rem;
|
|
66
|
-
}
|
|
67
|
-
.summary-passed {
|
|
68
|
-
color: #4f8a10;
|
|
69
|
-
border-left: 0.4rem solid #4f8a10;
|
|
70
|
-
padding-left: 0.5rem;
|
|
71
|
-
}
|
|
72
|
-
.summary-failed,
|
|
73
|
-
.summary-obsolete-snapshots {
|
|
74
|
-
color: #d8000c;
|
|
75
|
-
border-left: 0.4rem solid #d8000c;
|
|
76
|
-
padding-left: 0.5rem;
|
|
77
|
-
}
|
|
78
|
-
.summary-pending {
|
|
79
|
-
color: #9f6000;
|
|
80
|
-
border-left: 0.4rem solid #9f6000;
|
|
81
|
-
padding-left: 0.5rem;
|
|
82
|
-
}
|
|
83
|
-
.summary-empty {
|
|
84
|
-
color: #999;
|
|
85
|
-
border-left: 0.4rem solid #999;
|
|
86
|
-
}
|
|
87
|
-
|
|
88
|
-
.test-result {
|
|
89
|
-
padding: 1rem;
|
|
90
|
-
margin-bottom: 0.25rem;
|
|
91
|
-
}
|
|
92
|
-
.test-result:last-child {
|
|
93
|
-
border: 0;
|
|
94
|
-
}
|
|
95
|
-
.test-result.passed {
|
|
96
|
-
background-color: #dff2bf;
|
|
97
|
-
color: #4f8a10;
|
|
98
|
-
}
|
|
99
|
-
.test-result.failed {
|
|
100
|
-
background-color: #ffbaba;
|
|
101
|
-
color: #d8000c;
|
|
102
|
-
}
|
|
103
|
-
.test-result.pending {
|
|
104
|
-
background-color: #ffdf61;
|
|
105
|
-
color: #9f6000;
|
|
106
|
-
}
|
|
107
|
-
|
|
108
|
-
.test-info {
|
|
109
|
-
display: flex;
|
|
110
|
-
justify-content: space-between;
|
|
111
|
-
}
|
|
112
|
-
.test-suitename {
|
|
113
|
-
width: 20%;
|
|
114
|
-
text-align: left;
|
|
115
|
-
font-weight: bold;
|
|
116
|
-
word-break: break-word;
|
|
117
|
-
}
|
|
118
|
-
.test-title {
|
|
119
|
-
width: 40%;
|
|
120
|
-
text-align: left;
|
|
121
|
-
font-style: italic;
|
|
122
|
-
}
|
|
123
|
-
.test-status {
|
|
124
|
-
width: 20%;
|
|
125
|
-
text-align: right;
|
|
126
|
-
}
|
|
127
|
-
.test-duration {
|
|
128
|
-
width: 10%;
|
|
129
|
-
text-align: right;
|
|
130
|
-
font-size: 0.75rem;
|
|
131
|
-
}
|
|
132
|
-
|
|
133
|
-
.failureMessages {
|
|
134
|
-
padding: 0 1rem;
|
|
135
|
-
margin-top: 1rem;
|
|
136
|
-
border-top: 1px dashed #d8000c;
|
|
137
|
-
}
|
|
138
|
-
.failureMessages.suiteFailure {
|
|
139
|
-
border-top: none;
|
|
140
|
-
}
|
|
141
|
-
.failureMsg {
|
|
142
|
-
white-space: pre-wrap;
|
|
143
|
-
white-space: -moz-pre-wrap;
|
|
144
|
-
white-space: -pre-wrap;
|
|
145
|
-
white-space: -o-pre-wrap;
|
|
146
|
-
word-wrap: break-word;
|
|
147
|
-
}
|
|
148
|
-
|
|
149
|
-
.suite-container {
|
|
150
|
-
margin-bottom: 2rem;
|
|
151
|
-
}
|
|
152
|
-
.suite-info {
|
|
153
|
-
padding: 1rem;
|
|
154
|
-
background-color: #eee;
|
|
155
|
-
color: #777;
|
|
156
|
-
display: flex;
|
|
157
|
-
align-items: center;
|
|
158
|
-
margin-bottom: 0.25rem;
|
|
159
|
-
}
|
|
160
|
-
.suite-info .suite-path {
|
|
161
|
-
word-break: break-all;
|
|
162
|
-
flex-grow: 1;
|
|
163
|
-
font-family: monospace;
|
|
164
|
-
font-size: 1rem;
|
|
165
|
-
}
|
|
166
|
-
.suite-info .suite-time {
|
|
167
|
-
margin-left: 0.5rem;
|
|
168
|
-
padding: 0.2rem 0.3rem;
|
|
169
|
-
font-size: 0.75rem;
|
|
170
|
-
}
|
|
171
|
-
.suite-info .suite-time.warn {
|
|
172
|
-
background-color: #d8000c;
|
|
173
|
-
color: #fff;
|
|
174
|
-
}
|
|
175
|
-
|
|
176
|
-
/* CONSOLE LOGS */
|
|
177
|
-
.suite-consolelog {
|
|
178
|
-
margin-bottom: 0.25rem;
|
|
179
|
-
padding: 1rem;
|
|
180
|
-
background-color: #efefef;
|
|
181
|
-
}
|
|
182
|
-
.suite-consolelog-header {
|
|
183
|
-
font-weight: bold;
|
|
184
|
-
}
|
|
185
|
-
.suite-consolelog-item {
|
|
186
|
-
padding: 0.5rem;
|
|
187
|
-
}
|
|
188
|
-
.suite-consolelog-item pre {
|
|
189
|
-
margin: 0.5rem 0;
|
|
190
|
-
white-space: pre-wrap;
|
|
191
|
-
white-space: -moz-pre-wrap;
|
|
192
|
-
white-space: -pre-wrap;
|
|
193
|
-
white-space: -o-pre-wrap;
|
|
194
|
-
word-wrap: break-word;
|
|
195
|
-
}
|
|
196
|
-
.suite-consolelog-item-origin {
|
|
197
|
-
color: #777;
|
|
198
|
-
font-weight: bold;
|
|
199
|
-
}
|
|
200
|
-
.suite-consolelog-item-message {
|
|
201
|
-
color: #000;
|
|
202
|
-
font-size: 1rem;
|
|
203
|
-
padding: 0 0.5rem;
|
|
204
|
-
}
|
|
205
|
-
|
|
206
|
-
/* OBSOLETE SNAPSHOTS */
|
|
207
|
-
.suite-obsolete-snapshots {
|
|
208
|
-
margin-bottom: 0.25rem;
|
|
209
|
-
padding: 1rem;
|
|
210
|
-
background-color: #ffbaba;
|
|
211
|
-
color: #d8000c;
|
|
212
|
-
}
|
|
213
|
-
.suite-obsolete-snapshots-header {
|
|
214
|
-
font-weight: bold;
|
|
215
|
-
}
|
|
216
|
-
.suite-obsolete-snapshots-item {
|
|
217
|
-
padding: 0.5rem;
|
|
218
|
-
}
|
|
219
|
-
.suite-obsolete-snapshots-item pre {
|
|
220
|
-
margin: 0.5rem 0;
|
|
221
|
-
white-space: pre-wrap;
|
|
222
|
-
white-space: -moz-pre-wrap;
|
|
223
|
-
white-space: -pre-wrap;
|
|
224
|
-
white-space: -o-pre-wrap;
|
|
225
|
-
word-wrap: break-word;
|
|
226
|
-
}
|
|
227
|
-
.suite-obsolete-snapshots-item-message {
|
|
228
|
-
color: #000;
|
|
229
|
-
font-size: 1rem;
|
|
230
|
-
padding: 0 0.5rem;
|
|
231
|
-
}
|
|
232
|
-
</style></head><body><div id="jesthtml-content"><header><h1 id="title">Bio Test Report. Datagrok version datagrok/datagrok:latest SHA=34f75e5127b8. Commit c46c3f48.</h1></header><div id="metadata-container"><div id="timestamp">Started: 2022-07-15 08:43:03</div><div id="summary"><div id="suite-summary"><div class="summary-total">Suites (1)</div><div class="summary-passed summary-empty">0 passed</div><div class="summary-failed">1 failed</div><div class="summary-pending summary-empty">0 pending</div></div><div id="test-summary"><div class="summary-total">Tests (1)</div><div class="summary-passed summary-empty">0 passed</div><div class="summary-failed">1 failed</div><div class="summary-pending summary-empty">0 pending</div></div></div></div><div id="suite-1" class="suite-container"><div class="suite-info"><div class="suite-path">/home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts</div><div class="suite-time warn">110.047s</div></div><div class="suite-tests"><div class="test-result failed"><div class="test-info"><div class="test-suitename"> </div><div class="test-title">TEST</div><div class="test-status">failed</div><div class="test-duration">100.001s</div></div><div class="failureMessages"> <pre class="failureMsg">Error: thrown: "Exceeded timeout of 100000 ms for a test.
|
|
233
|
-
Use jest.setTimeout(newTimeout) to increase the timeout value, if this is a long-running test."
|
|
234
|
-
at Object.<anonymous> (/home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:38:1)
|
|
235
|
-
at Runtime._execModule (/home/runner/work/public/public/packages/Bio/node_modules/jest-runtime/build/index.js:1646:24)
|
|
236
|
-
at Runtime._loadModule (/home/runner/work/public/public/packages/Bio/node_modules/jest-runtime/build/index.js:1185:12)
|
|
237
|
-
at Runtime.requireModule (/home/runner/work/public/public/packages/Bio/node_modules/jest-runtime/build/index.js:1009:12)
|
|
238
|
-
at jestAdapter (/home/runner/work/public/public/packages/Bio/node_modules/jest-circus/build/legacy-code-todo-rewrite/jestAdapter.js:79:13)
|
|
239
|
-
at runTestInternal (/home/runner/work/public/public/packages/Bio/node_modules/jest-runner/build/runTest.js:389:16)
|
|
240
|
-
at runTest (/home/runner/work/public/public/packages/Bio/node_modules/jest-runner/build/runTest.js:475:34)
|
|
241
|
-
at TestRunner.runTests (/home/runner/work/public/public/packages/Bio/node_modules/jest-runner/build/index.js:101:12)
|
|
242
|
-
at TestScheduler.scheduleTests (/home/runner/work/public/public/packages/Bio/node_modules/@jest/core/build/TestScheduler.js:333:13)
|
|
243
|
-
at runJest (/home/runner/work/public/public/packages/Bio/node_modules/@jest/core/build/runJest.js:404:19)
|
|
244
|
-
at _run10000 (/home/runner/work/public/public/packages/Bio/node_modules/@jest/core/build/cli/index.js:320:7)
|
|
245
|
-
at runCLI (/home/runner/work/public/public/packages/Bio/node_modules/@jest/core/build/cli/index.js:173:3)
|
|
246
|
-
at Object.run (/home/runner/work/public/public/packages/Bio/node_modules/jest-cli/build/cli/index.js:155:37)</pre></div></div></div><div class="suite-consolelog"><div class="suite-consolelog-header">Console Log</div><div class="suite-consolelog-item"><pre class="suite-consolelog-item-origin"> at Object.<anonymous> (/home/runner/work/public/public/packages/Bio/src/__jest__/test-node.ts:63:11)
|
|
247
|
-
at Generator.next (<anonymous>)
|
|
248
|
-
at fulfilled (/home/runner/work/public/public/packages/Bio/src/__jest__/test-node.ts:28:58)
|
|
249
|
-
at processTicksAndRejections (internal/process/task_queues.js:97:5)</pre><pre class="suite-consolelog-item-message">Using web root: http://localhost:8080</pre></div><div class="suite-consolelog-item"><pre class="suite-consolelog-item-origin"> at /home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:40:11
|
|
250
|
-
at Generator.next (<anonymous>)
|
|
251
|
-
at /home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:34:71
|
|
252
|
-
at new Promise (<anonymous>)
|
|
253
|
-
at Object.<anonymous>.__awaiter (/home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:30:12)
|
|
254
|
-
at Object.<anonymous> (/home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:38:23)
|
|
255
|
-
at Promise.then.completed (/home/runner/work/public/public/packages/Bio/node_modules/jest-circus/build/utils.js:391:28)
|
|
256
|
-
at new Promise (<anonymous>)</pre><pre class="suite-consolelog-item-message">Testing Bio package</pre></div></div></div></div></body></html>
|