@datagrok/bio 1.7.6 → 1.7.7

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (10) hide show
  1. package/dist/package-test.js +137 -83
  2. package/dist/package.js +130 -83
  3. package/package.json +2 -2
  4. package/src/__jest__/remote.test.ts +2 -2
  5. package/src/__jest__/test-node.ts +1 -1
  6. package/src/package.ts +2 -1
  7. package/src/tests/splitters-test.ts +7 -0
  8. package/src/utils/multiple-sequence-alignment.ts +2 -2
  9. package/test-Bio-34f75e5127b8-7c42ea4b.html +335 -0
  10. package/test-Bio-34f75e5127b8-c46c3f48.html +0 -256
package/package.json CHANGED
@@ -2,7 +2,7 @@
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  "name": "@datagrok/bio",
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  "beta": false,
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  "friendlyName": "Bio",
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- "version": "1.7.6",
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+ "version": "1.7.7",
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  "description": "Bio is a [package](https://datagrok.ai/help/develop/develop#packages) for the [Datagrok](https://datagrok.ai) platform",
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  "repository": {
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  "type": "git",
@@ -11,7 +11,7 @@
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  },
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  "dependencies": {
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  "@biowasm/aioli": ">=2.4.0",
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- "@datagrok-libraries/bio": "2.8.3",
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+ "@datagrok-libraries/bio": "^2.8.4",
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  "@datagrok-libraries/utils": "^1.0.0",
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  "@datagrok-libraries/ml": "^2.0.10",
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  "cash-dom": "latest",
package/src/__jest__/remote.test.ts CHANGED
@@ -5,7 +5,7 @@
5
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  import * as utils from './test-node';
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  import puppeteer from 'puppeteer';
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7
 
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- const P_START_TIMEOUT: number = 100000;
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+ const P_START_TIMEOUT: number = 500000;
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  let browser: puppeteer.Browser;
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  let page: puppeteer.Page;
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@@ -65,4 +65,4 @@ it('TEST', async () => {
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  console.log(r.passReport);
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  // @ts-ignore
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  expect(r.failed).checkOutput(false, r.failReport);
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- }, 100000);
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+ }, 500000);
package/src/__jest__/test-node.ts CHANGED
@@ -76,7 +76,7 @@ export async function getBrowserPage(puppeteer: any): Promise<{ browser: any, pa
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  await page.goto(url);
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  try {
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  await page.waitForSelector('.grok-preloader');
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- await page.waitForFunction(() => document.querySelector('.grok-preloader') == null, {timeout: 100000});
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+ await page.waitForFunction(() => document.querySelector('.grok-preloader') == null, {timeout: 500000});
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  } catch (error) {
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  throw error;
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  }
package/src/package.ts CHANGED
@@ -208,7 +208,8 @@ export async function multipleSequenceAlignmentAny(table: DG.DataFrame, col: DG.
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  if (!checkInputColumn(col, 'MSA', ['fasta'], ['DNA', 'RNA', 'PT']))
209
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  return null;
210
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211
- const msaCol = await runKalign(col, false);
211
+ const unUsedName = table.columns.getUnusedName(`msa(${col.name})`);
212
+ const msaCol = await runKalign(col, false, unUsedName);
212
213
  table.columns.add(msaCol);
213
214
 
214
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  // This call is required to enable cell renderer activation
package/src/tests/splitters-test.ts CHANGED
@@ -21,10 +21,17 @@ category('splitters', () => {
21
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  ['meI', 'hHis', 'Aca', 'N', 'T', 'dK', 'Thr_PO3H2', 'Aca',
22
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  'D-Tyr_Et', 'D-Dap', 'dV', 'E', 'N', 'pnG', 'Phe_4Me']
23
23
  ],
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+ // HELM editor dialog returns HELM string with multichar monomer names in square brackets
25
+ helm3: [
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+ 'PEPTIDE1{[meI].[hHis].[Aca].N.T.[dK].[Thr_PO3H2].[Aca].[D-Tyr_Et].[D-Dap].[dV].E.N.[pnG].[Phe_4Me]}$$$',
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+ ['meI', 'hHis', 'Aca', 'N', 'T', 'dK', 'Thr_PO3H2', 'Aca',
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+ 'D-Tyr_Et', 'D-Dap', 'dV', 'E', 'N', 'pnG', 'Phe_4Me']
29
+ ],
24
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  };
25
31
 
26
32
  test('helm1', async () => { await _testHelmSplitter(data.helm1[0], data.helm1[1]); });
27
33
  test('helm2', async () => { await _testHelmSplitter(data.helm2[0], data.helm2[1]); });
34
+ test('helm3-multichar', async () => { await _testHelmSplitter(data.helm3[0], data.helm3[1]); });
28
35
  });
29
36
 
30
37
  export async function _testHelmSplitter(src: string, tgt: string[]) {
package/src/utils/multiple-sequence-alignment.ts CHANGED
@@ -32,7 +32,7 @@ function _fastaToStrings(fasta: string): string[] {
32
32
  * @param {boolean} isAligned Whether the column is aligned.
33
33
  * @return {Promise<DG.Column>} Aligned sequences.
34
34
  */
35
- export async function runKalign(srcCol: DG.Column, isAligned = false): Promise<DG.Column> {
35
+ export async function runKalign(srcCol: DG.Column, isAligned = false, unUsedName:string = ''): Promise<DG.Column> {
36
36
  let sequences = srcCol.toList();
37
37
 
38
38
  if (isAligned)
@@ -56,7 +56,7 @@ export async function runKalign(srcCol: DG.Column, isAligned = false): Promise<D
56
56
  throw new Error(`kalign output no result`);
57
57
 
58
58
  const aligned = _fastaToStrings(buf).slice(0, sequences.length);
59
- const tgtCol = DG.Column.fromStrings(`msa(${srcCol.name})`, aligned);
59
+ const tgtCol = DG.Column.fromStrings(unUsedName, aligned);
60
60
 
61
61
  // units
62
62
  const srcUnits = srcCol.getTag(DG.TAGS.UNITS);
package/test-Bio-34f75e5127b8-7c42ea4b.html ADDED
@@ -0,0 +1,335 @@
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+ <html><head><meta charset="utf-8"/><title>Bio Test Report. Datagrok version datagrok/datagrok:latest SHA=34f75e5127b8. Commit 7c42ea4b.</title><style type="text/css">html,
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+ body {
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+ font-family: Arial, Helvetica, sans-serif;
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+ font-size: 1rem;
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+ margin: 0;
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+ padding: 0;
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+ color: #333;
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+ }
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+ body {
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+ padding: 2rem 1rem;
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+ font-size: 0.85rem;
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+ }
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+ #jesthtml-content {
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+ margin: 0 auto;
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+ max-width: 70rem;
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+ }
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+ header {
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+ display: flex;
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+ align-items: center;
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+ }
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+ #title {
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+ margin: 0;
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+ flex-grow: 1;
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+ }
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+ #logo {
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+ height: 4rem;
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+ }
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+ #timestamp {
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+ color: #777;
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+ margin-top: 0.5rem;
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+ }
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+
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+ /** SUMMARY */
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+ #summary {
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+ color: #333;
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+ margin: 2rem 0;
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+ display: flex;
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+ font-family: monospace;
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+ font-size: 1rem;
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+ }
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+ margin-right: 2rem;
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+ padding: 1rem;
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+ min-width: 15rem;
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+ #summary > div:last-child {
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+ margin-right: 0;
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+ }
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+ @media only screen and (max-width: 720px) {
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+ #summary {
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+ flex-direction: column;
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+ }
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+ #summary > div {
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+ margin-right: 0;
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+ margin-top: 2rem;
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+ }
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+ #summary > div:first-child {
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+ margin-top: 0;
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+
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+ .summary-total {
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+ font-weight: bold;
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+ margin-bottom: 0.5rem;
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+ }
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+ .summary-passed {
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+ color: #4f8a10;
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+ border-left: 0.4rem solid #4f8a10;
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+ padding-left: 0.5rem;
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+ }
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+ .summary-failed,
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+ .summary-obsolete-snapshots {
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+ color: #d8000c;
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+ border-left: 0.4rem solid #d8000c;
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+ padding-left: 0.5rem;
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+ .summary-pending {
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+ color: #9f6000;
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+ border-left: 0.4rem solid #9f6000;
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+ padding-left: 0.5rem;
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+ }
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+ .summary-empty {
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+ color: #999;
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+ border-left: 0.4rem solid #999;
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+ }
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+ .test-result {
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+ padding: 1rem;
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+ margin-bottom: 0.25rem;
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+ }
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+ border: 0;
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+ color: #4f8a10;
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+ background-color: #ffbaba;
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+ color: #d8000c;
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+ }
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+ background-color: #ffdf61;
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+ color: #9f6000;
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+ }
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+
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+ .test-info {
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+ display: flex;
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+ justify-content: space-between;
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+ }
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+ .test-suitename {
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+ width: 20%;
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+ text-align: left;
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+ font-weight: bold;
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+ word-break: break-word;
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+ }
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+ .test-title {
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+ width: 40%;
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+ text-align: left;
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+ font-style: italic;
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+ }
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+ .test-status {
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+ width: 20%;
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+ text-align: right;
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+ }
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+ .test-duration {
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+ width: 10%;
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+ text-align: right;
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+ font-size: 0.75rem;
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+ }
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+ .failureMessages {
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+ padding: 0 1rem;
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+ margin-top: 1rem;
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+ border-top: 1px dashed #d8000c;
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+ }
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+ .failureMessages.suiteFailure {
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+ border-top: none;
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+ white-space: pre-wrap;
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+ white-space: -moz-pre-wrap;
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+ white-space: -pre-wrap;
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+ white-space: -o-pre-wrap;
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+ word-wrap: break-word;
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+ }
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+
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+ .suite-container {
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+ margin-bottom: 2rem;
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+ }
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+ .suite-info {
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+ padding: 1rem;
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+ background-color: #eee;
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+ color: #777;
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+ display: flex;
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+ align-items: center;
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+ margin-bottom: 0.25rem;
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+ }
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+ .suite-info .suite-path {
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+ word-break: break-all;
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+ flex-grow: 1;
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+ font-family: monospace;
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+ font-size: 1rem;
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+ }
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+ .suite-info .suite-time {
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+ margin-left: 0.5rem;
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+ padding: 0.2rem 0.3rem;
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+ font-size: 0.75rem;
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+ }
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+ .suite-info .suite-time.warn {
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+ background-color: #d8000c;
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+ color: #fff;
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+ }
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+
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+ /* CONSOLE LOGS */
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+ .suite-consolelog {
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+ margin-bottom: 0.25rem;
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+ padding: 1rem;
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+ background-color: #efefef;
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+ }
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+ .suite-consolelog-header {
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+ font-weight: bold;
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+ padding: 0.5rem;
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+ }
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+ margin: 0.5rem 0;
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+ white-space: pre-wrap;
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+ white-space: -moz-pre-wrap;
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+ white-space: -o-pre-wrap;
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+ word-wrap: break-word;
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+ }
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+ .suite-consolelog-item-origin {
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+ color: #777;
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+ font-weight: bold;
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+ }
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+ .suite-consolelog-item-message {
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+ color: #000;
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+ font-size: 1rem;
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+ padding: 0 0.5rem;
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+ }
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+
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+ /* OBSOLETE SNAPSHOTS */
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+ .suite-obsolete-snapshots {
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+ margin-bottom: 0.25rem;
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+ padding: 1rem;
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+ background-color: #ffbaba;
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+ color: #d8000c;
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+ }
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+ .suite-obsolete-snapshots-header {
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+ font-weight: bold;
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+ }
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+ .suite-obsolete-snapshots-item {
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+ padding: 0.5rem;
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+ }
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+ .suite-obsolete-snapshots-item pre {
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+ margin: 0.5rem 0;
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+ white-space: pre-wrap;
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+ white-space: -moz-pre-wrap;
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+ white-space: -pre-wrap;
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+ white-space: -o-pre-wrap;
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+ word-wrap: break-word;
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+ }
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+ .suite-obsolete-snapshots-item-message {
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+ color: #000;
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+ font-size: 1rem;
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+ padding: 0 0.5rem;
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+ }
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+ </style></head><body><div id="jesthtml-content"><header><h1 id="title">Bio Test Report. Datagrok version datagrok/datagrok:latest SHA=34f75e5127b8. Commit 7c42ea4b.</h1></header><div id="metadata-container"><div id="timestamp">Started: 2022-07-15 17:01:22</div><div id="summary"><div id="suite-summary"><div class="summary-total">Suites (1)</div><div class="summary-passed summary-empty">0 passed</div><div class="summary-failed">1 failed</div><div class="summary-pending summary-empty">0 pending</div></div><div id="test-summary"><div class="summary-total">Tests (1)</div><div class="summary-passed summary-empty">0 passed</div><div class="summary-failed">1 failed</div><div class="summary-pending summary-empty">0 pending</div></div></div></div><div id="suite-1" class="suite-container"><div class="suite-info"><div class="suite-path">/home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts</div><div class="suite-time warn">175.127s</div></div><div class="suite-tests"><div class="test-result failed"><div class="test-info"><div class="test-suitename"> </div><div class="test-title">TEST</div><div class="test-status">failed</div><div class="test-duration">165.279s</div></div><div class="failureMessages"> <pre class="failureMsg">Error: Test result : Bio.MSA.is_correct : TypeError: Cannot read properties of undefined (reading 'split')
233
+ Test result : Bio.converters.testFastaGapsToSeparator : Error: Units are not specified in column
234
+ Test result : Bio.converters.testFastaGapsToHelm : Error: Units are not specified in column
235
+ Test result : Bio.converters.HelmDnaToFasta : Error: Units are not specified in column
236
+ Test result : Bio.converters.HelmDnaToSeparator : Error: Units are not specified in column
237
+
238
+ at /home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:67:20
239
+ at Generator.next (&lt;anonymous&gt;)
240
+ at fulfilled (/home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:31:58)
241
+ at runMicrotasks (&lt;anonymous&gt;)
242
+ at processTicksAndRejections (internal/process/task_queues.js:97:5)</pre></div></div></div><div class="suite-consolelog"><div class="suite-consolelog-header">Console Log</div><div class="suite-consolelog-item"><pre class="suite-consolelog-item-origin"> at Object.&lt;anonymous&gt; (/home/runner/work/public/public/packages/Bio/src/__jest__/test-node.ts:63:11)
243
+ at Generator.next (&lt;anonymous&gt;)
244
+ at fulfilled (/home/runner/work/public/public/packages/Bio/src/__jest__/test-node.ts:28:58)
245
+ at processTicksAndRejections (internal/process/task_queues.js:97:5)</pre><pre class="suite-consolelog-item-message">Using web root: http://localhost:8080</pre></div><div class="suite-consolelog-item"><pre class="suite-consolelog-item-origin"> at /home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:40:11
246
+ at Generator.next (&lt;anonymous&gt;)
247
+ at /home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:34:71
248
+ at new Promise (&lt;anonymous&gt;)
249
+ at Object.&lt;anonymous&gt;.__awaiter (/home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:30:12)
250
+ at Object.&lt;anonymous&gt; (/home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:38:23)
251
+ at Promise.then.completed (/home/runner/work/public/public/packages/Bio/node_modules/jest-circus/build/utils.js:391:28)
252
+ at new Promise (&lt;anonymous&gt;)</pre><pre class="suite-consolelog-item-message">Testing Bio package</pre></div><div class="suite-consolelog-item"><pre class="suite-consolelog-item-origin"> at /home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:65:11
253
+ at Generator.next (&lt;anonymous&gt;)
254
+ at fulfilled (/home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:31:58)
255
+ at runMicrotasks (&lt;anonymous&gt;)
256
+ at processTicksAndRejections (internal/process/task_queues.js:97:5)</pre><pre class="suite-consolelog-item-message">Test result : Bio.WebLogo.testGetStats : OK
257
+ Test result : Bio.WebLogo.testGetAlphabetSimilarity : OK
258
+ Test result : Bio.WebLogo.testPickupPaletteN1 : OK
259
+ Test result : Bio.WebLogo.testPickupPaletteN1e : OK
260
+ Test result : Bio.WebLogo.testPickupPaletteAA1 : OK
261
+ Test result : Bio.WebLogo.testPickupPaletteX : OK
262
+ Test result : Bio.WebLogo.monomerToText.longMonomerSingle : OK
263
+ Test result : Bio.WebLogo.monomerToText.longMonomerShort : OK
264
+ Test result : Bio.WebLogo.monomerToText.longMonomerLong56 : OK
265
+ Test result : Bio.WebLogo.monomerToText.longMonomerComplexFirstPartShort : OK
266
+ Test result : Bio.WebLogo.monomerToText.longMonomerComplexFirstPartLong56 : OK
267
+ Test result : Bio.Palettes.testPaletteN : OK
268
+ Test result : Bio.Palettes.testPaletteAA : OK
269
+ Test result : Bio.detectors.Negative1 : OK
270
+ Test result : Bio.detectors.Negative2 : OK
271
+ Test result : Bio.detectors.Negative3 : OK
272
+ Test result : Bio.detectors.NegativeSmiles : OK
273
+ Test result : Bio.detectors.Dna1 : OK
274
+ Test result : Bio.detectors.Rna1 : OK
275
+ Test result : Bio.detectors.AA1 : OK
276
+ Test result : Bio.detectors.MsaDna1 : OK
277
+ Test result : Bio.detectors.MsaAA1 : OK
278
+ Test result : Bio.detectors.SepDna : OK
279
+ Test result : Bio.detectors.SepRna : OK
280
+ Test result : Bio.detectors.SepPt : OK
281
+ Test result : Bio.detectors.SepUn1 : OK
282
+ Test result : Bio.detectors.SepUn2 : OK
283
+ Test result : Bio.detectors.SepMsaN1 : OK
284
+ Test result : Bio.detectors.SamplesFastaCsvPt : OK
285
+ Test result : Bio.detectors.SamplesFastaCsvNegativeEntry : OK
286
+ Test result : Bio.detectors.SamplesFastaCsvNegativeLength : OK
287
+ Test result : Bio.detectors.SamplesFastaCsvNegativeUniProtKB : OK
288
+ Test result : Bio.detectors.SamplesFastaFastaPt : OK
289
+ Test result : Bio.detectors.samplesPeptidesComplexNegativeID : OK
290
+ Test result : Bio.detectors.SamplesPeptidesComplexNegativeMeasured : OK
291
+ Test result : Bio.detectors.SamplesPeptidesComplexNegativeValue : OK
292
+ Test result : Bio.detectors.samplesMsaComplexUn : OK
293
+ Test result : Bio.detectors.samplesMsaComplexNegativeActivity : OK
294
+ Test result : Bio.detectors.samplesIdCsvNegativeID : OK
295
+ Test result : Bio.detectors.samplesSarSmallCsvNegativeSmiles : OK
296
+ Test result : Bio.detectors.samplesHelmCsvHELM : OK
297
+ Test result : Bio.detectors.samplesHelmCsvNegativeActivity : OK
298
+ Test result : Bio.detectors.samplesTestHelmNegativeID : OK
299
+ Test result : Bio.detectors.samplesTestHelmNegativeTestType : OK
300
+ Test result : Bio.detectors.samplesTestHelmPositiveHelmString : OK
301
+ Test result : Bio.detectors.samplesTestHelmNegativeValid : OK
302
+ Test result : Bio.detectors.samplesTestHelmNegativeMolWeight : OK
303
+ Test result : Bio.detectors.samplesTestHelmNegativeMolFormula : OK
304
+ Test result : Bio.detectors.samplesTestHelmNegativeSmiles : OK
305
+ Test result : Bio.detectors.samplesTestDemogNegativeAll : OK
306
+ Test result : Bio.detectors.samplesTestSmiles2NegativeSmiles : OK
307
+ Test result : Bio.detectors.samplesFastaPtPosSequence : OK
308
+ Test result : Bio.detectors.samplesTestCerealNegativeCerealName : OK
309
+ Test result : Bio.MSA.test_table.is_not_empty : OK
310
+ Test result : Bio.sequenceSpace.sequenceSpaceOpens : OK
311
+ Test result : Bio.activityCliffs.activityCliffsOpen : OK
312
+ Test result : Bio.splitters.helm1 : OK
313
+ Test result : Bio.splitters.helm2 : OK
314
+ Test result : Bio.splitters.helm3-multichar : OK
315
+ Test result : Bio.renderers.afterMsa : OK
316
+ Test result : Bio.renderers.afterConvert : OK
317
+ Test result : Bio.converters.testFastaPtToSeparator : OK
318
+ Test result : Bio.converters.testFastaDnaToSeparator : OK
319
+ Test result : Bio.converters.testFastaRnaToSeparator : OK
320
+ Test result : Bio.converters.testFastaPtToHelm : OK
321
+ Test result : Bio.converters.testFastaDnaToHelm : OK
322
+ Test result : Bio.converters.testFastaRnaToHelm : OK
323
+ Test result : Bio.converters.testSeparatorPtToFasta : OK
324
+ Test result : Bio.converters.testSeparatorDnaToFasta : OK
325
+ Test result : Bio.converters.testSeparatorRnaToFasta : OK
326
+ Test result : Bio.converters.testSeparatorGapsToFasta : OK
327
+ Test result : Bio.converters.testSeparatorPtToHelm : OK
328
+ Test result : Bio.converters.testSeparatorDnaToHelm : OK
329
+ Test result : Bio.converters.testSeparatorRnaToHelm : OK
330
+ Test result : Bio.converters.testSeparatorGapsToHelm : OK
331
+ Test result : Bio.converters.HelmRnaToFasta : OK
332
+ Test result : Bio.converters.HelmPtToFasta : OK
333
+ Test result : Bio.converters.HelmRnaToSeparator : OK
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+ Test result : Bio.converters.HelmPtToSeparator : OK
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+ </pre></div></div></div></div></body></html>
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- </style></head><body><div id="jesthtml-content"><header><h1 id="title">Bio Test Report. Datagrok version datagrok/datagrok:latest SHA=34f75e5127b8. Commit c46c3f48.</h1></header><div id="metadata-container"><div id="timestamp">Started: 2022-07-15 08:43:03</div><div id="summary"><div id="suite-summary"><div class="summary-total">Suites (1)</div><div class="summary-passed summary-empty">0 passed</div><div class="summary-failed">1 failed</div><div class="summary-pending summary-empty">0 pending</div></div><div id="test-summary"><div class="summary-total">Tests (1)</div><div class="summary-passed summary-empty">0 passed</div><div class="summary-failed">1 failed</div><div class="summary-pending summary-empty">0 pending</div></div></div></div><div id="suite-1" class="suite-container"><div class="suite-info"><div class="suite-path">/home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts</div><div class="suite-time warn">110.047s</div></div><div class="suite-tests"><div class="test-result failed"><div class="test-info"><div class="test-suitename"> </div><div class="test-title">TEST</div><div class="test-status">failed</div><div class="test-duration">100.001s</div></div><div class="failureMessages"> <pre class="failureMsg">Error: thrown: "Exceeded timeout of 100000 ms for a test.
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- Use jest.setTimeout(newTimeout) to increase the timeout value, if this is a long-running test."
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- at Object.&lt;anonymous&gt; (/home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:38:1)
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- at Runtime._execModule (/home/runner/work/public/public/packages/Bio/node_modules/jest-runtime/build/index.js:1646:24)
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- at Runtime._loadModule (/home/runner/work/public/public/packages/Bio/node_modules/jest-runtime/build/index.js:1185:12)
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- at Runtime.requireModule (/home/runner/work/public/public/packages/Bio/node_modules/jest-runtime/build/index.js:1009:12)
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- at jestAdapter (/home/runner/work/public/public/packages/Bio/node_modules/jest-circus/build/legacy-code-todo-rewrite/jestAdapter.js:79:13)
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- at runTestInternal (/home/runner/work/public/public/packages/Bio/node_modules/jest-runner/build/runTest.js:389:16)
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- at runTest (/home/runner/work/public/public/packages/Bio/node_modules/jest-runner/build/runTest.js:475:34)
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- at TestRunner.runTests (/home/runner/work/public/public/packages/Bio/node_modules/jest-runner/build/index.js:101:12)
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- at TestScheduler.scheduleTests (/home/runner/work/public/public/packages/Bio/node_modules/@jest/core/build/TestScheduler.js:333:13)
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- at runJest (/home/runner/work/public/public/packages/Bio/node_modules/@jest/core/build/runJest.js:404:19)
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- at _run10000 (/home/runner/work/public/public/packages/Bio/node_modules/@jest/core/build/cli/index.js:320:7)
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- at runCLI (/home/runner/work/public/public/packages/Bio/node_modules/@jest/core/build/cli/index.js:173:3)
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- at Object.run (/home/runner/work/public/public/packages/Bio/node_modules/jest-cli/build/cli/index.js:155:37)</pre></div></div></div><div class="suite-consolelog"><div class="suite-consolelog-header">Console Log</div><div class="suite-consolelog-item"><pre class="suite-consolelog-item-origin"> at Object.&lt;anonymous&gt; (/home/runner/work/public/public/packages/Bio/src/__jest__/test-node.ts:63:11)
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- at Generator.next (&lt;anonymous&gt;)
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- at fulfilled (/home/runner/work/public/public/packages/Bio/src/__jest__/test-node.ts:28:58)
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- at processTicksAndRejections (internal/process/task_queues.js:97:5)</pre><pre class="suite-consolelog-item-message">Using web root: http://localhost:8080</pre></div><div class="suite-consolelog-item"><pre class="suite-consolelog-item-origin"> at /home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:40:11
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- at Generator.next (&lt;anonymous&gt;)
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- at /home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:34:71
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- at new Promise (&lt;anonymous&gt;)
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- at Object.&lt;anonymous&gt;.__awaiter (/home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:30:12)
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- at Object.&lt;anonymous&gt; (/home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:38:23)
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- at Promise.then.completed (/home/runner/work/public/public/packages/Bio/node_modules/jest-circus/build/utils.js:391:28)
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- at new Promise (&lt;anonymous&gt;)</pre><pre class="suite-consolelog-item-message">Testing Bio package</pre></div></div></div></div></body></html>