@datagrok/bio 1.7.4 → 1.7.7

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Files changed (21) hide show
  1. package/detectors.js +1 -1
  2. package/dist/package-test.js +406 -123
  3. package/dist/package.js +335 -98
  4. package/files/samples/sample_SEPARATOR_PT.csv +101 -0
  5. package/files/tests/testCereal.csv +78 -0
  6. package/package.json +3 -2
  7. package/src/__jest__/remote.test.ts +30 -16
  8. package/src/__jest__/test-node.ts +1 -1
  9. package/src/const.ts +21 -0
  10. package/src/package-test.ts +1 -1
  11. package/src/package.ts +13 -5
  12. package/src/tests/convert-test.ts +34 -10
  13. package/src/tests/detectors-test.ts +6 -0
  14. package/src/tests/{renderer-test.ts → renderers-test.ts} +25 -16
  15. package/src/tests/splitters-test.ts +7 -0
  16. package/src/utils/cell-renderer.ts +59 -16
  17. package/src/utils/convert.ts +40 -15
  18. package/src/utils/multiple-sequence-alignment.ts +2 -2
  19. package/src/utils/utils.ts +35 -0
  20. package/test-Bio-34f75e5127b8-7c42ea4b.html +335 -0
  21. package/test-Bio-34f75e5127b8-1314754e.html +0 -256
package/test-Bio-34f75e5127b8-1314754e.html DELETED
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- width: 20%;
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- width: 10%;
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- text-align: right;
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- font-size: 0.75rem;
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- .failureMessages {
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- padding: 0 1rem;
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- margin-top: 1rem;
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- border-top: 1px dashed #d8000c;
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- white-space: pre-wrap;
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- .suite-container {
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- margin-bottom: 2rem;
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- .suite-info {
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- padding: 1rem;
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- background-color: #eee;
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- color: #777;
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- display: flex;
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- align-items: center;
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- margin-bottom: 0.25rem;
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- margin-bottom: 0.25rem;
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- padding: 1rem;
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- background-color: #efefef;
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- color: #777;
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- font-weight: bold;
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- color: #000;
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- font-size: 1rem;
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- padding: 0 0.5rem;
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-
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- /* OBSOLETE SNAPSHOTS */
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- .suite-obsolete-snapshots {
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- margin-bottom: 0.25rem;
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- padding: 1rem;
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- background-color: #ffbaba;
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- color: #d8000c;
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- font-weight: bold;
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- padding: 0.5rem;
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- margin: 0.5rem 0;
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- white-space: pre-wrap;
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- white-space: -moz-pre-wrap;
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- white-space: -o-pre-wrap;
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- word-wrap: break-word;
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- .suite-obsolete-snapshots-item-message {
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- color: #000;
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- font-size: 1rem;
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- padding: 0 0.5rem;
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- }
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- </style></head><body><div id="jesthtml-content"><header><h1 id="title">Bio Test Report. Datagrok version datagrok/datagrok:latest SHA=34f75e5127b8. Commit 1314754e.</h1></header><div id="metadata-container"><div id="timestamp">Started: 2022-07-13 15:23:55</div><div id="summary"><div id="suite-summary"><div class="summary-total">Suites (1)</div><div class="summary-passed summary-empty">0 passed</div><div class="summary-failed">1 failed</div><div class="summary-pending summary-empty">0 pending</div></div><div id="test-summary"><div class="summary-total">Tests (1)</div><div class="summary-passed summary-empty">0 passed</div><div class="summary-failed">1 failed</div><div class="summary-pending summary-empty">0 pending</div></div></div></div><div id="suite-1" class="suite-container"><div class="suite-info"><div class="suite-path">/home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts</div><div class="suite-time warn">110.181s</div></div><div class="suite-tests"><div class="test-result failed"><div class="test-info"><div class="test-suitename"> </div><div class="test-title">TEST</div><div class="test-status">failed</div><div class="test-duration">100.001s</div></div><div class="failureMessages"> <pre class="failureMsg">Error: thrown: "Exceeded timeout of 100000 ms for a test.
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- Use jest.setTimeout(newTimeout) to increase the timeout value, if this is a long-running test."
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- at Object.&lt;anonymous&gt; (/home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:22:1)
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- at Runtime._execModule (/home/runner/work/public/public/packages/Bio/node_modules/jest-runtime/build/index.js:1646:24)
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- at Runtime._loadModule (/home/runner/work/public/public/packages/Bio/node_modules/jest-runtime/build/index.js:1185:12)
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- at Runtime.requireModule (/home/runner/work/public/public/packages/Bio/node_modules/jest-runtime/build/index.js:1009:12)
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- at jestAdapter (/home/runner/work/public/public/packages/Bio/node_modules/jest-circus/build/legacy-code-todo-rewrite/jestAdapter.js:79:13)
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- at runTestInternal (/home/runner/work/public/public/packages/Bio/node_modules/jest-runner/build/runTest.js:389:16)
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- at runTest (/home/runner/work/public/public/packages/Bio/node_modules/jest-runner/build/runTest.js:475:34)
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- at TestRunner.runTests (/home/runner/work/public/public/packages/Bio/node_modules/jest-runner/build/index.js:101:12)
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- at TestScheduler.scheduleTests (/home/runner/work/public/public/packages/Bio/node_modules/@jest/core/build/TestScheduler.js:333:13)
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- at runJest (/home/runner/work/public/public/packages/Bio/node_modules/@jest/core/build/runJest.js:404:19)
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- at _run10000 (/home/runner/work/public/public/packages/Bio/node_modules/@jest/core/build/cli/index.js:320:7)
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- at runCLI (/home/runner/work/public/public/packages/Bio/node_modules/@jest/core/build/cli/index.js:173:3)
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- at Object.run (/home/runner/work/public/public/packages/Bio/node_modules/jest-cli/build/cli/index.js:155:37)</pre></div></div></div><div class="suite-consolelog"><div class="suite-consolelog-header">Console Log</div><div class="suite-consolelog-item"><pre class="suite-consolelog-item-origin"> at Object.&lt;anonymous&gt; (/home/runner/work/public/public/packages/Bio/src/__jest__/test-node.ts:63:11)
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- at Generator.next (&lt;anonymous&gt;)
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- at fulfilled (/home/runner/work/public/public/packages/Bio/src/__jest__/test-node.ts:28:58)
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- at processTicksAndRejections (internal/process/task_queues.js:97:5)</pre><pre class="suite-consolelog-item-message">Using web root: http://localhost:8080</pre></div><div class="suite-consolelog-item"><pre class="suite-consolelog-item-origin"> at /home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:24:11
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- at Generator.next (&lt;anonymous&gt;)
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- at /home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:34:71
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- at new Promise (&lt;anonymous&gt;)
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- at Object.&lt;anonymous&gt;.__awaiter (/home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:30:12)
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- at Object.&lt;anonymous&gt; (/home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:22:23)
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- at Promise.then.completed (/home/runner/work/public/public/packages/Bio/node_modules/jest-circus/build/utils.js:391:28)
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- at new Promise (&lt;anonymous&gt;)</pre><pre class="suite-consolelog-item-message">Testing Bio package</pre></div></div></div></div></body></html>