@datagrok/bio 1.7.24 → 1.7.25
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- package/detectors.js +6 -3
- package/dist/package-test.js +162 -191
- package/dist/package.js +104 -152
- package/package.json +7 -3
- package/{setup-unlink-clean → setup-unlink-clean.sh} +0 -0
- package/{setup → setup.sh} +1 -1
- package/src/__jest__/remote.test.ts +2 -2
- package/src/__jest__/test-node.ts +3 -2
- package/src/package-test.ts +0 -1
- package/src/package.ts +11 -22
- package/src/tests/WebLogo-positions-test.ts +43 -21
- package/src/tests/detectors-test.ts +21 -18
- package/src/tests/renderers-test.ts +6 -2
- package/src/utils/cell-renderer.ts +59 -117
- package/src/utils/convert.ts +12 -2
- package/{test-Bio-4f0c8bae6479-367602e1.html → test-Bio-4f0c8bae6479-17115d45.html} +4 -4
package/detectors.js
CHANGED
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@@ -94,8 +94,10 @@ class BioPackageDetectors extends DG.Package {
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const alphabet = BioPackageDetectors.detectAlphabet(statsAsChars.freq, candidateAlphabets, '-');
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if (alphabet === 'UN') return null;
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97
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-
const units =
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97
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+
const units = 'fasta';
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col.setTag(DG.TAGS.UNITS, units);
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+
col.setTag('aligned', 'SEQ.MSA');
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+
col.setTag('alphabet', alphabet);
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return DG.SEMTYPE.MACROMOLECULE;
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}
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} else {
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@@ -117,8 +119,9 @@ class BioPackageDetectors extends DG.Package {
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// const forbidden = BioPackageDetectors.checkForbiddenWoSeparator(stats.freq);
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if (separator || alphabet != 'UN') {
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-
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-
col.setTag(
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+
col.setTag(DG.TAGS.UNITS, format);
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+
col.setTag('aligned', seqType);
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+
col.setTag('alphabet', alphabet);
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if (separator) col.setTag('separator', separator);
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return DG.SEMTYPE.MACROMOLECULE;
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}
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