@datagrok/bio 1.7.22 → 1.7.25
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/detectors.js +6 -3
- package/dist/package-test.js +518 -198
- package/dist/package.js +274 -174
- package/package.json +13 -6
- package/{setup-unlink-clean → setup-unlink-clean.sh} +0 -0
- package/{setup → setup.sh} +1 -1
- package/src/__jest__/remote.test.ts +4 -4
- package/src/__jest__/test-node.ts +3 -2
- package/src/package-test.ts +1 -1
- package/src/package.ts +38 -34
- package/src/tests/WebLogo-positions-test.ts +102 -8
- package/src/tests/WebLogo-test.ts +1 -0
- package/src/tests/detectors-test.ts +21 -18
- package/src/tests/fasta-handler-test.ts +141 -0
- package/src/tests/renderers-test.ts +6 -2
- package/src/utils/cell-renderer.ts +103 -113
- package/src/utils/constants.ts +3 -4
- package/src/utils/convert.ts +12 -2
- package/src/utils/sequence-activity-cliffs.ts +1 -1
- package/src/viewers/vd-regions-viewer.ts +17 -0
- package/test-Bio-4f0c8bae6479-17115d45.html +358 -0
- package/test-Bio-4f0c8bae6479-dd77efbc.html +0 -348
package/detectors.js
CHANGED
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@@ -94,8 +94,10 @@ class BioPackageDetectors extends DG.Package {
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const alphabet = BioPackageDetectors.detectAlphabet(statsAsChars.freq, candidateAlphabets, '-');
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if (alphabet === 'UN') return null;
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-
const units =
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+
const units = 'fasta';
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col.setTag(DG.TAGS.UNITS, units);
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+
col.setTag('aligned', 'SEQ.MSA');
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+
col.setTag('alphabet', alphabet);
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return DG.SEMTYPE.MACROMOLECULE;
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}
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} else {
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@@ -117,8 +119,9 @@ class BioPackageDetectors extends DG.Package {
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// const forbidden = BioPackageDetectors.checkForbiddenWoSeparator(stats.freq);
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if (separator || alphabet != 'UN') {
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-
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-
col.setTag(
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+
col.setTag(DG.TAGS.UNITS, format);
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+
col.setTag('aligned', seqType);
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+
col.setTag('alphabet', alphabet);
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if (separator) col.setTag('separator', separator);
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return DG.SEMTYPE.MACROMOLECULE;
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}
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