@datagrok/bio 1.7.21 → 1.7.22
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
package/package.json
CHANGED
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@@ -2,7 +2,7 @@
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"name": "@datagrok/bio",
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"beta": false,
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"friendlyName": "Bio",
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"version": "1.7.
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"version": "1.7.22",
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"description": "Bio is a [package](https://datagrok.ai/help/develop/develop#packages) for the [Datagrok](https://datagrok.ai) platform",
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"repository": {
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"type": "git",
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@@ -125,6 +125,7 @@ MWRSWY-CKHP
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testSpgi100 = 'testSpgi100',
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testUnichemSources = 'testUnichemSources',
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testDmvOffices = 'testDmvOffices',
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testAlertCollection = 'testAlertCollection',
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}
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const samples: { [key: string]: string } = {
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@@ -145,6 +146,7 @@ MWRSWY-CKHP
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'testSpgi100': 'System:AppData/Bio/tests/testSpgi100.csv',
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'testUnichemSources': 'System:AppData/Bio/tests/testUnichemSources.csv',
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'testDmvOffices': 'System:AppData/Bio/tests/testDmvOffices.csv',
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'testAlertCollection': 'System:AppData/Bio/tests/testAlertCollection.csv',
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};
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const _samplesDfs: { [key: string]: Promise<DG.DataFrame> } = {};
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@@ -342,6 +344,9 @@ MWRSWY-CKHP
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test('samplesTestSpgi100NegativePrimaryScaffoldName', async () => {
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await _testNeg(readSamples(Samples.testSpgi100), 'Primary Scaffold Name');
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});
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test('samplesTestSpgi100NegativeSampleName', async () => {
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await _testNeg(readSamples(Samples.testSpgi100), 'Sample Name');
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});
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test('samplesTestUnichemSourcesNegativeSrcUrl', async () => {
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await _testNeg(readSamples(Samples.testUnichemSources), 'src_url');
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@@ -356,6 +361,10 @@ MWRSWY-CKHP
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test('samplesTestDmvOfficesNegativeCity', async () => {
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await _testNeg(readSamples(Samples.testDmvOffices), 'City');
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});
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test('samplesTestAlertCollectionNegativeSmarts', async () => {
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await _testNeg(readSamples(Samples.testAlertCollection), 'smarts');
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});
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});
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export async function _testNeg(readDf: DfReaderFunc, colName: string) {
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@@ -1,4 +1,4 @@
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<html><head><meta charset="utf-8"/><title>Bio Test Report. Datagrok version datagrok/datagrok:latest SHA=4f0c8bae6479. Commit
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<html><head><meta charset="utf-8"/><title>Bio Test Report. Datagrok version datagrok/datagrok:latest SHA=4f0c8bae6479. Commit dd77efbc.</title><style type="text/css">html,
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body {
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font-family: Arial, Helvetica, sans-serif;
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font-size: 1rem;
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@@ -229,7 +229,7 @@ header {
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font-size: 1rem;
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padding: 0 0.5rem;
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}
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</style></head><body><div id="jesthtml-content"><header><h1 id="title">Bio Test Report. Datagrok version datagrok/datagrok:latest SHA=4f0c8bae6479. Commit
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</style></head><body><div id="jesthtml-content"><header><h1 id="title">Bio Test Report. Datagrok version datagrok/datagrok:latest SHA=4f0c8bae6479. Commit dd77efbc.</h1></header><div id="metadata-container"><div id="timestamp">Started: 2022-08-01 14:54:31</div><div id="summary"><div id="suite-summary"><div class="summary-total">Suites (1)</div><div class="summary-passed">1 passed</div><div class="summary-failed summary-empty">0 failed</div><div class="summary-pending summary-empty">0 pending</div></div><div id="test-summary"><div class="summary-total">Tests (1)</div><div class="summary-passed">1 passed</div><div class="summary-failed summary-empty">0 failed</div><div class="summary-pending summary-empty">0 pending</div></div></div></div><div id="suite-1" class="suite-container"><div class="suite-info"><div class="suite-path">/home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts</div><div class="suite-time warn">230.253s</div></div><div class="suite-tests"><div class="test-result passed"><div class="test-info"><div class="test-suitename"> </div><div class="test-title">TEST</div><div class="test-status">passed</div><div class="test-duration">213.793s</div></div></div></div><div class="suite-consolelog"><div class="suite-consolelog-header">Console Log</div><div class="suite-consolelog-item"><pre class="suite-consolelog-item-origin"> at Object.<anonymous> (/home/runner/work/public/public/packages/Bio/src/__jest__/test-node.ts:63:11)
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at Generator.next (<anonymous>)
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at fulfilled (/home/runner/work/public/public/packages/Bio/src/__jest__/test-node.ts:28:58)
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at processTicksAndRejections (internal/process/task_queues.js:97:5)</pre><pre class="suite-consolelog-item-message">Using web root: http://localhost:8080</pre></div><div class="suite-consolelog-item"><pre class="suite-consolelog-item-origin"> at /home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:40:11
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@@ -301,10 +301,12 @@ Test result : Bio.detectors.samplesTestCerealNegativeCerealName : OK
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Test result : Bio.detectors.samplesTestSpgi100NegativeStereoCategory : OK
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Test result : Bio.detectors.samplesTestSpgi100NegativeScaffoldNames : OK
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Test result : Bio.detectors.samplesTestSpgi100NegativePrimaryScaffoldName : OK
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Test result : Bio.detectors.samplesTestSpgi100NegativeSampleName : OK
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Test result : Bio.detectors.samplesTestUnichemSourcesNegativeSrcUrl : OK
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Test result : Bio.detectors.samplesTestUnichemSourcesNegativeBaseIdUrl : OK
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Test result : Bio.detectors.samplesTestDmvOfficesNegativeOfficeName : OK
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Test result : Bio.detectors.samplesTestDmvOfficesNegativeCity : OK
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Test result : Bio.detectors.samplesTestAlertCollectionNegativeSmarts : OK
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Test result : Bio.MSA.isCorrect : OK
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Test result : Bio.MSA.isCorrectLong : OK
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Test result : Bio.sequenceSpace.sequenceSpaceOpens : OK
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