@datagrok/bio 1.7.2 → 1.7.3

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Files changed (18) hide show
  1. package/detectors.js +2 -1
  2. package/dist/package-test.js +380 -309
  3. package/dist/package.js +295 -276
  4. package/package.json +3 -6
  5. package/src/package-test.ts +1 -1
  6. package/src/package.ts +13 -16
  7. package/src/tests/WebLogo-test.ts +18 -0
  8. package/src/tests/activity-cliffs-tests.ts +14 -9
  9. package/src/tests/convert-test.ts +1 -1
  10. package/src/tests/detectors-test.ts +8 -2
  11. package/src/tests/renderer-test.ts +8 -2
  12. package/src/tests/sequence-space-test.ts +7 -3
  13. package/src/tests/splitters-test.ts +35 -0
  14. package/src/utils/cell-renderer.ts +8 -5
  15. package/src/utils/convert.ts +1 -1
  16. package/{test-Bio-34f75e5127b8-ac96da52.html → test-Bio-34f75e5127b8-303cfb72.html} +2 -2
  17. package/src/tests/splitter-test.ts +0 -22
  18. package/src/utils/notation-converter.ts +0 -280
package/detectors.js CHANGED
@@ -111,9 +111,10 @@ class BioPackageDetectors extends DG.Package {
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  // const noSeparatorRe = /[a-z\d]+$/i;
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  const noSeparatorChemRe = /[HBCNOFPSKVYI]/i; // Mendeleev's periodic table single char elements
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  const noSeparatorAlphaDigitRe = /[\dA-Z]/i;
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+ const noSeparatorBracketsRe = /[\[\]()<>{}]/i;
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  const cleanFreq = Object.assign({}, ...Object.entries(freq)
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  .filter(([m, f]) => m != ' ' &&
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- !noSeparatorChemRe.test(m) && !noSeparatorAlphaDigitRe.test(m) &&
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+ !noSeparatorChemRe.test(m) && !noSeparatorAlphaDigitRe.test(m) && !noSeparatorBracketsRe.test(m) &&
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  !BioPackageDetectors.PeptideFastaAlphabet.has(m) &&
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  !BioPackageDetectors.DnaFastaAlphabet.has(m))
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  .map(([m, f]) => ({[m]: f})));