@datagrok/bio 1.7.14 → 1.7.19
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/detectors.js +5 -4
- package/dist/package-test.js +371 -203
- package/dist/package.js +236 -166
- package/files/tests/testDmvOffices.csv +514 -0
- package/package.json +5 -9
- package/setup +35 -0
- package/setup-unlink-clean +22 -0
- package/setup-unlink-clean.cmd +15 -0
- package/setup.cmd +15 -19
- package/src/package-test.ts +1 -0
- package/src/package.ts +52 -83
- package/src/tests/WebLogo-positions-test.ts +68 -0
- package/src/tests/activity-cliffs-tests.ts +2 -2
- package/src/tests/detectors-test.ts +10 -1
- package/src/tests/msa-tests.ts +45 -20
- package/src/tests/utils.ts +0 -12
- package/src/utils/cell-renderer.ts +16 -29
- package/src/utils/multiple-sequence-alignment.ts +7 -11
- package/src/utils/utils.ts +6 -6
- package/src/widgets/representations.ts +1 -0
- package/{test-Bio-34f75e5127b8-92b3a565.html → test-Bio-4f0c8bae6479-ddc1ded2.html} +8 -11
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<html><head><meta charset="utf-8"/><title>Bio Test Report. Datagrok version datagrok/datagrok:latest SHA=
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<html><head><meta charset="utf-8"/><title>Bio Test Report. Datagrok version datagrok/datagrok:latest SHA=4f0c8bae6479. Commit ddc1ded2.</title><style type="text/css">html,
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font-family: Arial, Helvetica, sans-serif;
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</style></head><body><div id="jesthtml-content"><header><h1 id="title">Bio Test Report. Datagrok version datagrok/datagrok:latest SHA=
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Test result : Bio.activityCliffs.activityCliffsOpen : Error: Expected "105 cliffs", got "2362 cliffs"
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at /home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:67:20
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at Generator.next (<anonymous>)
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at fulfilled (/home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:31:58)
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at runMicrotasks (<anonymous>)
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at processTicksAndRejections (internal/process/task_queues.js:97:5)</pre></div></div></div><div class="suite-consolelog"><div class="suite-consolelog-header">Console Log</div><div class="suite-consolelog-item"><pre class="suite-consolelog-item-origin"> at Object.<anonymous> (/home/runner/work/public/public/packages/Bio/src/__jest__/test-node.ts:63:11)
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</style></head><body><div id="jesthtml-content"><header><h1 id="title">Bio Test Report. Datagrok version datagrok/datagrok:latest SHA=4f0c8bae6479. Commit ddc1ded2.</h1></header><div id="metadata-container"><div id="timestamp">Started: 2022-08-01 11:56:39</div><div id="summary"><div id="suite-summary"><div class="summary-total">Suites (1)</div><div class="summary-passed">1 passed</div><div class="summary-failed summary-empty">0 failed</div><div class="summary-pending summary-empty">0 pending</div></div><div id="test-summary"><div class="summary-total">Tests (1)</div><div class="summary-passed">1 passed</div><div class="summary-failed summary-empty">0 failed</div><div class="summary-pending summary-empty">0 pending</div></div></div></div><div id="suite-1" class="suite-container"><div class="suite-info"><div class="suite-path">/home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts</div><div class="suite-time warn">225.198s</div></div><div class="suite-tests"><div class="test-result passed"><div class="test-info"><div class="test-suitename"> </div><div class="test-title">TEST</div><div class="test-status">passed</div><div class="test-duration">209.26s</div></div></div></div><div class="suite-consolelog"><div class="suite-consolelog-header">Console Log</div><div class="suite-consolelog-item"><pre class="suite-consolelog-item-origin"> at Object.<anonymous> (/home/runner/work/public/public/packages/Bio/src/__jest__/test-node.ts:63:11)
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at Generator.next (<anonymous>)
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at fulfilled (/home/runner/work/public/public/packages/Bio/src/__jest__/test-node.ts:28:58)
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at processTicksAndRejections (internal/process/task_queues.js:97:5)</pre><pre class="suite-consolelog-item-message">Using web root: http://localhost:8080</pre></div><div class="suite-consolelog-item"><pre class="suite-consolelog-item-origin"> at /home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:40:11
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at new Promise (<anonymous>)</pre><pre class="suite-consolelog-item-message">Testing Bio package</pre></div><div class="suite-consolelog-item"><pre class="suite-consolelog-item-origin"> at /home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:65:11
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at Generator.next (<anonymous>)
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at fulfilled (/home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:31:58)
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at processTicksAndRejections (internal/process/task_queues.js:97:5)</pre><pre class="suite-consolelog-item-message">Test result : Bio.WebLogo.testGetStats : OK
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Test result : Bio.WebLogo.testGetAlphabetSimilarity : OK
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Test result : Bio.WebLogo.testPickupPaletteN1 : OK
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Test result : Bio.detectors.samplesTestSpgi100NegativePrimaryScaffoldName : OK
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Test result : Bio.detectors.samplesTestUnichemSourcesNegativeSrcUrl : OK
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Test result : Bio.detectors.samplesTestUnichemSourcesNegativeBaseIdUrl : OK
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Test result : Bio.
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Test result : Bio.detectors.samplesTestDmvOfficesNegativeOfficeName : OK
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Test result : Bio.detectors.samplesTestDmvOfficesNegativeCity : OK
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Test result : Bio.MSA.isCorrect : OK
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Test result : Bio.MSA.isCorrectLong : OK
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Test result : Bio.sequenceSpace.sequenceSpaceOpens : OK
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Test result : Bio.activityCliffs.activityCliffsOpen : OK
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Test result : Bio.splitters.helm1 : OK
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Test result : Bio.splitters.helm2 : OK
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Test result : Bio.splitters.helm3-multichar : OK
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Test result : Bio.converters.testHelmLoneRibose : OK
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Test result : Bio.converters.testHelmLoneDeoxyribose : OK
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Test result : Bio.converters.testHelmLonePhosphorus : OK
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Test result : Bio.WebLogo-positions.allPositions : OK
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</pre></div></div></div></div></body></html>
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