@datagrok/bio 1.5.8 → 1.6.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (23) hide show
  1. package/detectors.js +24 -12
  2. package/dist/package-test.js +627 -500
  3. package/dist/package.js +385 -474
  4. package/files/samples/sample_FASTA.csv +0 -1
  5. package/files/samples/sample_FASTA.fasta +0 -3
  6. package/files/samples/testDemog.csv +5851 -0
  7. package/files/samples/testHelm.csv +6 -0
  8. package/files/samples/{id.csv → testId.csv} +0 -0
  9. package/files/samples/{sar-small.csv → testSmiles.csv} +0 -0
  10. package/files/samples/testSmiles2.csv +12248 -0
  11. package/package.json +2 -2
  12. package/src/package-test.ts +1 -0
  13. package/src/package.ts +86 -19
  14. package/src/tests/convert-test.ts +8 -8
  15. package/src/tests/detectors-test.ts +48 -6
  16. package/src/tests/renderer-test.ts +40 -18
  17. package/src/utils/cell-renderer.ts +24 -60
  18. package/src/utils/convert.ts +10 -14
  19. package/src/utils/multiple-sequence-alignment.ts +4 -2
  20. package/src/utils/notation-converter.ts +215 -55
  21. package/{test-Bio-34f75e5127b8-c4c5a3dc.html → test-Bio-34f75e5127b8-95c6fae9.html} +17 -20
  22. package/src/utils/chem-palette.ts +0 -280
  23. package/src/utils/misc.ts +0 -29
package/files/samples/sample_FASTA.csv CHANGED
@@ -63,4 +63,3 @@ UPI0001614A89,37,A0A0A8VBX4; A0A0H3NXY0; A0A0G2N6K7.1 (obsolete); A0A0M1V224.1 (
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K8T7U3.1 (obsolete); K8TAY6.1 (obsolete); K8TJL1.1 (obsolete); K8UBJ3.1 (obsolete); K8ULX9.1 (obsolete); K8V3L9.1 (obsolete); K8VAJ8.1 (obsolete); K8VPG1.1 (obsolete); L5W4S4.1 (obsolete); L5WC19.1 (obsolete); L5WHP1.1 (obsolete); L5WP78.1 (obsolete); L5X276.1 (obsolete); L5XDS4.1 (obsolete); L5YA20.1 (obsolete); L5YPV3.1 (obsolete); L5YVT4.1 (obsolete); L5ZH95.1 (obsolete); L5ZKS5.1 (obsolete); L6A2S2.1 (obsolete); L6A7R6.1 (obsolete); L6APT2.1 (obsolete); L6B959.1 (obsolete); L6BV30.1 (obsolete); L6C2V7.1 (obsolete); L6CB61.1 (obsolete); L6CX95.1 (obsolete); L6D2R2.1 (obsolete); L6DYK1.1 (obsolete); L6E2G1.1 (obsolete); L6ECX2.1 (obsolete); L6F2X8.1 (obsolete); L6FBL9.1 (obsolete); L6FXC0.1 (obsolete); L6GAQ7.1 (obsolete); L6GDF3.1 (obsolete); L6GQ18.1 (obsolete); L6GUK0.1 (obsolete); L6HEM7.1 (obsolete); L6HZ42.1 (obsolete); L6IJA8.1 (obsolete); L6IKQ8.1 (obsolete); L6JAX7.1 (obsolete); L6JQW5.1 (obsolete); L6JTZ9.1 (obsolete); L6KHV2.1 (obsolete); L6KJ96.1 (obsolete); L6KPE7.1 (obsolete); L6LIS9.1 (obsolete); L6LRL1.1 (obsolete); L6M479.1 (obsolete); L6MJ49.1 (obsolete); L6MRV4.1 (obsolete); L6N4S1.1 (obsolete); L6NJT7.1 (obsolete); L6NQD7.1 (obsolete); L6NYY9.1 (obsolete); L6PTJ6.1 (obsolete); L6Q5G9.1 (obsolete); L6QG28.1 (obsolete); L6RD28.1 (obsolete); L6RT68.1 (obsolete); L6S8W2.1 (obsolete); L6SG06.1 (obsolete); L6ST86.1 (obsolete); L6TMF4.1 (obsolete); L6TTR9.1 (obsolete); L6U0S5.1 (obsolete); L6UCM0.1 (obsolete); L6UY97.1 (obsolete); L6V2H8.1 (obsolete); L6VEW0.1 (obsolete); L6VGW5.1 (obsolete); L6VM83.1 (obsolete); L6W988.1 (obsolete); L6WWB6.1 (obsolete); L6WY56.1 (obsolete); L6X469.1 (obsolete); L6Y0M1.1 (obsolete); L6YE57.1 (obsolete); L6YI25.1 (obsolete); L6Z0U5.1 (obsolete); L6ZMA5.1 (obsolete); L6ZXN5.1 (obsolete); L9Q2Z1.1 (obsolete); L9Q651.1 (obsolete); L9QWK6.1 (obsolete); L9RTY2.1 (obsolete); L9RZ23.1 (obsolete); L9RZV7.1 (obsolete); L9SPL8.1 (obsolete); L9SUR8.1 (obsolete); L9T0I1.1 (obsolete); L9T3F0.1 (obsolete); M9XM34.1 (obsolete); R7RAX9.1 (obsolete); S4HPD6.1 (obsolete); S4IA20.1 (obsolete); S4IYB2.1 (obsolete); S4JUW3.1 (obsolete); S4KAX3.1 (obsolete); S4KSA9.1 (obsolete); S4KVH5.1 (obsolete); S4LU50.1 (obsolete); S5HC55.1 (obsolete); S5IK76.1 (obsolete); S5V9L5.1 (obsolete); T1YEZ9.1 (obsolete); T2PZY7.1 (obsolete); T2QEG8.1 (obsolete); U1J3E4.1 (obsolete); U1RUM6.1 (obsolete); U3SIJ4.1 (obsolete); U6QI94.1 (obsolete); U6QL14.1 (obsolete); U6VL57.1 (obsolete); U6W0G5.1 (obsolete); U6WAX9.1 (obsolete); U6X5N2.1 (obsolete); U6XU02.1 (obsolete); U6XUE1.1 (obsolete); U6Z0B9.1 (obsolete); V0GUR1.1 (obsolete); V0JCU6.1 (obsolete); V1FK33.1 (obsolete); V1G2K9.1 (obsolete); V1GCR6.1 (obsolete); V1IGN7.1 (obsolete); V1IMQ3.1 (obsolete); V1JBW5.1 (obsolete); V1K0S1.1 (obsolete); V1KS42.1 (obsolete); V1LZZ7.1 (obsolete); V1NPU7.1 (obsolete); V1NX60.1 (obsolete); V1Q9V0.1 (obsolete); V1QHX1.1 (obsolete); V1RCP8.1 (obsolete); V1YX44.1 (obsolete); V2CQS1.1 (obsolete); V2D2U7.1 (obsolete); V2DLF9.1 (obsolete); V2F5F1.1 (obsolete); V2F5Q4.1 (obsolete); V2MGV5.1 (obsolete); V2NI96.1 (obsolete); V2NYL4.1 (obsolete); V2PHB9.1 (obsolete); V5KNP2.1 (obsolete); V5ZLN4.1 (obsolete); V7RZQ1.1 (obsolete); V7WUI4.1 (obsolete); V7X4V6.1 (obsolete); V8M2J1.1 (obsolete); V8ML76.1 (obsolete); X4RML9.1 (obsolete); X5NKI0.1 (obsolete),MFFTQNLWVERQQLIKPFILNVNIIYLKNIIIFFIIGGY,-1.194574836126887
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  UPI00016B0142,38,NA,MRDTQCHSADFPVYPNVLAVGVRRALWPLPAQDANRTQ,0.44996359010503817
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- UPI000173114C,30,B2L4W4,PADDMPTXRNGPSTTNDSDDFVDPWTVQTG,1.3068624916447211
package/files/samples/sample_FASTA.fasta CHANGED
@@ -190,7 +190,4 @@ MFFTQNLWVERQQLIKPFILNVNIIYLKNIIIFFIIGGY
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- >UPI000173114C:30
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-
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