@datagrok/bio 1.5.4 → 1.5.5
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- package/detectors.js +11 -0
- package/dist/package-test.js +9 -2
- package/package.json +1 -1
- package/src/tests/detectors-test.ts +11 -1
package/detectors.js
CHANGED
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@@ -24,12 +24,23 @@ class BioPackageDetectors extends DG.Package {
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static NucleotidesFastaAlphabet = new Set(['A', 'C', 'G', 'T']);
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+
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+
/** @param s {String} - string to check
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* @returns {boolean} */
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static isHelm(s) {
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return s.startsWith('PEPTIDE1{') || s.startsWith('RNA1{') || s.startsWith('CHEM1{') || s.startsWith('BLOB1{');
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}
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//tags: semTypeDetector
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//input: column col
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//output: string semType
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detectMacromolecule(col) {
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// To collect alphabet freq three strategies can be used:
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// as chars, as fasta (single or within square brackets), as with the separator.
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if (DG.Detector.sampleCategories(col, (s) => BioPackageDetectors.isHelm(s), 1)) {
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col.setTag(DG.TAGS.UNITS, 'HELM');
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return BioPackageDetectors.mmSemType;
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}
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const alphabetCandidates = [
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['NT', BioPackageDetectors.NucleotidesFastaAlphabet],
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