@datagrok/bio 1.0.4 → 1.1.0

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Files changed (7) hide show
  1. package/README.md +43 -0
  2. package/dist/package-test.js +18 -18
  3. package/dist/package.js +3 -3
  4. package/package.json +4 -4
  5. package/package.png +0 -0
  6. package/src/tests/WebLogo.test.ts +15 -15
  7. package/{test-Bio-089b6516ed77-2a3ccd87.html → test-Bio-3109311545e4-04060aee.html} +3 -12
package/package.json CHANGED
@@ -2,7 +2,7 @@
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  "name": "@datagrok/bio",
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  "beta": false,
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  "friendlyName": "Bio",
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- "version": "1.0.4",
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+ "version": "1.1.0",
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  "description": "Bio is a [package](https://datagrok.ai/help/develop/develop#packages) for the [Datagrok](https://datagrok.ai) platform",
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  "repository": {
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  "type": "git",
@@ -10,10 +10,10 @@
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  "directory": "packages/Bio"
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  },
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  "dependencies": {
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- "@datagrok-libraries/bio": "^2.0.2",
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+ "@datagrok-libraries/bio": "^2.1.0",
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  "@datagrok-libraries/utils": "^0.4.2",
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  "cash-dom": "latest",
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- "datagrok-api": "^1.1.5",
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+ "datagrok-api": "^1.3.5",
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  "dayjs": "latest",
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  "ts-loader": "^9.2.5",
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  "typescript": "^4.4.2"
@@ -26,7 +26,7 @@
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  "eslint-config-google": "latest",
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  "jest": "^27.0.0",
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  "jest-html-reporter": "^3.5.0",
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- "puppeteer": "latest",
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+ "puppeteer": "^13.7.0",
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  "ts-jest": "^27.0.0",
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  "webpack": "latest",
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  "webpack-cli": "latest"
package/package.png CHANGED
Binary file
package/src/tests/WebLogo.test.ts CHANGED
@@ -24,9 +24,9 @@ category('WebLogo', () => {
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  const dfN1: DG.DataFrame = DG.DataFrame.fromCsv(
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  `seq
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- 'ACGT'
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- 'CAGT'
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- 'TTCA'
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+ ACGTCT
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+ CAGTGT
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+ TTCAAC
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  `);
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  /** 2 - is an error monomer
@@ -35,17 +35,17 @@ const dfN1: DG.DataFrame = DG.DataFrame.fromCsv(
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  */
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  const dfN1e: DG.DataFrame = DG.DataFrame.fromCsv(
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  `seq
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- ACGT
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- CAGT
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- TTC2
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+ ACGTAT
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+ CAGTTG
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+ TTCG2C
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  `);
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  /** Pure amino acids sequence */
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  const dfAA1: DG.DataFrame = DG.DataFrame.fromCsv(
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  `seq
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- FWPHWYV
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+ FWPHEYV
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  YNRQWYV
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- MKPSWYV
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+ MKPSEYV
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  `);
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  /** A - alanine, G - glycine, T -= threonine, C - cysteine, W - tryptophan
@@ -53,9 +53,9 @@ MKPSWYV
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  */
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  const dfAA2: DG.DataFrame = DG.DataFrame.fromCsv(
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  `seq
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- AGTC
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- AGTC
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- AGTCW
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+ AGTCAT
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+ AGTCGC
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+ AGTCATW
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  `);
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  /** This sequence set should be recognized as unknown. */
@@ -72,10 +72,10 @@ export function _testGetAlphabetFreqs() {
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  const mFreq = WebLogo.getAlphabetFreqs(seqCol);
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  expectObject(mFreq, {
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- 'A': 3,
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- 'C': 3,
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- 'G': 2,
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- 'T': 4
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+ 'A': 4,
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+ 'C': 5,
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+ 'G': 3,
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+ 'T': 6
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  });
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  }
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package/{test-Bio-089b6516ed77-2a3ccd87.html → test-Bio-3109311545e4-04060aee.html} RENAMED
@@ -1,4 +1,4 @@
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- <html><head><meta charset="utf-8"/><title>Bio Test Report. Datagrok version datagrok/datagrok:latest SHA=089b6516ed77. Commit 2a3ccd87.</title><style type="text/css">html,
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+ <html><head><meta charset="utf-8"/><title>Bio Test Report. Datagrok version datagrok/datagrok:latest SHA=3109311545e4. Commit 04060aee.</title><style type="text/css">html,
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  body {
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  font-family: Arial, Helvetica, sans-serif;
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  font-size: 1rem;
@@ -229,14 +229,7 @@ header {
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  font-size: 1rem;
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  padding: 0 0.5rem;
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  }
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- </style></head><body><div id="jesthtml-content"><header><h1 id="title">Bio Test Report. Datagrok version datagrok/datagrok:latest SHA=089b6516ed77. Commit 2a3ccd87.</h1></header><div id="metadata-container"><div id="timestamp">Started: 2022-06-09 07:57:03</div><div id="summary"><div id="suite-summary"><div class="summary-total">Suites (1)</div><div class="summary-passed summary-empty">0 passed</div><div class="summary-failed">1 failed</div><div class="summary-pending summary-empty">0 pending</div></div><div id="test-summary"><div class="summary-total">Tests (1)</div><div class="summary-passed summary-empty">0 passed</div><div class="summary-failed">1 failed</div><div class="summary-pending summary-empty">0 pending</div></div></div></div><div id="suite-1" class="suite-container"><div class="suite-info"><div class="suite-path">/home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts</div><div class="suite-time warn">13.215s</div></div><div class="suite-tests"><div class="test-result failed"><div class="test-info"><div class="test-suitename"> </div><div class="test-title">TEST</div><div class="test-status">failed</div><div class="test-duration">2.683s</div></div><div class="failureMessages"> <pre class="failureMsg">Error: expect(received).toBe(expected) // Object.is equality
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-
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- Expected: false
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- Received: true
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- at /home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:49:20
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- at Generator.next (&lt;anonymous&gt;)
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- at fulfilled (/home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:31:58)
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- at processTicksAndRejections (internal/process/task_queues.js:97:5)</pre></div></div></div><div class="suite-consolelog"><div class="suite-consolelog-header">Console Log</div><div class="suite-consolelog-item"><pre class="suite-consolelog-item-origin"> at Object.&lt;anonymous&gt; (/home/runner/work/public/public/packages/Bio/src/__jest__/test-node.ts:63:11)
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+ </style></head><body><div id="jesthtml-content"><header><h1 id="title">Bio Test Report. Datagrok version datagrok/datagrok:latest SHA=3109311545e4. Commit 04060aee.</h1></header><div id="metadata-container"><div id="timestamp">Started: 2022-06-22 13:34:16</div><div id="summary"><div id="suite-summary"><div class="summary-total">Suites (1)</div><div class="summary-passed">1 passed</div><div class="summary-failed summary-empty">0 failed</div><div class="summary-pending summary-empty">0 pending</div></div><div id="test-summary"><div class="summary-total">Tests (1)</div><div class="summary-passed">1 passed</div><div class="summary-failed summary-empty">0 failed</div><div class="summary-pending summary-empty">0 pending</div></div></div></div><div id="suite-1" class="suite-container"><div class="suite-info"><div class="suite-path">/home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts</div><div class="suite-time warn">17.821s</div></div><div class="suite-tests"><div class="test-result passed"><div class="test-info"><div class="test-suitename"> </div><div class="test-title">TEST</div><div class="test-status">passed</div><div class="test-duration">6.52s</div></div></div></div><div class="suite-consolelog"><div class="suite-consolelog-header">Console Log</div><div class="suite-consolelog-item"><pre class="suite-consolelog-item-origin"> at Object.&lt;anonymous&gt; (/home/runner/work/public/public/packages/Bio/src/__jest__/test-node.ts:63:11)
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  at Generator.next (&lt;anonymous&gt;)
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  at fulfilled (/home/runner/work/public/public/packages/Bio/src/__jest__/test-node.ts:28:58)
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  at processTicksAndRejections (internal/process/task_queues.js:97:5)</pre><pre class="suite-consolelog-item-message">Using web root: http://localhost:8080</pre></div><div class="suite-consolelog-item"><pre class="suite-consolelog-item-origin"> at /home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:24:11
@@ -249,6 +242,4 @@ Received: true
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  at new Promise (&lt;anonymous&gt;)</pre><pre class="suite-consolelog-item-message">Testing Bio package</pre></div><div class="suite-consolelog-item"><pre class="suite-consolelog-item-origin"> at /home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:47:11
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  at Generator.next (&lt;anonymous&gt;)
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  at fulfilled (/home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:31:58)
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- at processTicksAndRejections (internal/process/task_queues.js:97:5)</pre><pre class="suite-consolelog-item-message">WebLogo.testPickupPaletteN1: Error: Expected "true", got "false"
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- WebLogo.testPickupPaletteAA1: Error: Expected "true", got "false"
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- </pre></div></div></div></div></body></html>
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+ at processTicksAndRejections (internal/process/task_queues.js:97:5)</pre><pre class="suite-consolelog-item-message"/></div></div></div></div></body></html>