@datagrok/bio 1.0.3 → 1.0.6
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
package/package.json
CHANGED
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@@ -2,7 +2,7 @@
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"name": "@datagrok/bio",
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"beta": false,
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"friendlyName": "Bio",
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"version": "1.0.
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"version": "1.0.6",
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"description": "Bio is a [package](https://datagrok.ai/help/develop/develop#packages) for the [Datagrok](https://datagrok.ai) platform",
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"repository": {
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"type": "git",
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@@ -10,10 +10,10 @@
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"directory": "packages/Bio"
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},
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"dependencies": {
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"@datagrok-libraries/bio": "^2.0.
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"@datagrok-libraries/bio": "^2.0.3",
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"@datagrok-libraries/utils": "^0.4.2",
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"cash-dom": "latest",
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"datagrok-api": "^1.
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"datagrok-api": "^1.3.5",
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"dayjs": "latest",
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"ts-loader": "^9.2.5",
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"typescript": "^4.4.2"
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@@ -26,7 +26,7 @@
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"eslint-config-google": "latest",
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"jest": "^27.0.0",
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"jest-html-reporter": "^3.5.0",
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"puppeteer": "
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"puppeteer": "^13.7.0",
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"ts-jest": "^27.0.0",
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"webpack": "latest",
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"webpack-cli": "latest"
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@@ -51,5 +51,6 @@
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},
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"canEdit": [
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"Developers"
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]
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],
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"category": "Bioinformatics"
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}
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package/package.png
CHANGED
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Binary file
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@@ -24,9 +24,9 @@ category('WebLogo', () => {
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const dfN1: DG.DataFrame = DG.DataFrame.fromCsv(
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`seq
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ACGTCT
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CAGTGT
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TTCAAC
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`);
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/** 2 - is an error monomer
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@@ -35,17 +35,17 @@ const dfN1: DG.DataFrame = DG.DataFrame.fromCsv(
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*/
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const dfN1e: DG.DataFrame = DG.DataFrame.fromCsv(
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`seq
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ACGTAT
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CAGTTG
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TTCG2C
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`);
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/** Pure amino acids sequence */
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const dfAA1: DG.DataFrame = DG.DataFrame.fromCsv(
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`seq
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FWPHEYV
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YNRQWYV
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MKPSEYV
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`);
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/** A - alanine, G - glycine, T -= threonine, C - cysteine, W - tryptophan
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@@ -53,9 +53,9 @@ MKPSWYV
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*/
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const dfAA2: DG.DataFrame = DG.DataFrame.fromCsv(
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`seq
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AGTCAT
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AGTCGC
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AGTCATW
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`);
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/** This sequence set should be recognized as unknown. */
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@@ -72,10 +72,10 @@ export function _testGetAlphabetFreqs() {
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const mFreq = WebLogo.getAlphabetFreqs(seqCol);
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expectObject(mFreq, {
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'A':
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'C':
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'G':
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'T':
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'A': 4,
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'C': 5,
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'G': 3,
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'T': 6
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});
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}
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@@ -1,4 +1,4 @@
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<html><head><meta charset="utf-8"/><title>Bio Test Report. Datagrok version datagrok/datagrok:latest SHA=
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<html><head><meta charset="utf-8"/><title>Bio Test Report. Datagrok version datagrok/datagrok:latest SHA=186527ba2cc3. Commit 380e3a80.</title><style type="text/css">html,
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body {
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font-family: Arial, Helvetica, sans-serif;
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font-size: 1rem;
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font-size: 1rem;
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padding: 0 0.5rem;
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}
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</style></head><body><div id="jesthtml-content"><header><h1 id="title">Bio Test Report. Datagrok version datagrok/datagrok:latest SHA=
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</style></head><body><div id="jesthtml-content"><header><h1 id="title">Bio Test Report. Datagrok version datagrok/datagrok:latest SHA=186527ba2cc3. Commit 380e3a80.</h1></header><div id="metadata-container"><div id="timestamp">Started: 2022-06-16 17:12:07</div><div id="summary"><div id="suite-summary"><div class="summary-total">Suites (1)</div><div class="summary-passed">1 passed</div><div class="summary-failed summary-empty">0 failed</div><div class="summary-pending summary-empty">0 pending</div></div><div id="test-summary"><div class="summary-total">Tests (1)</div><div class="summary-passed">1 passed</div><div class="summary-failed summary-empty">0 failed</div><div class="summary-pending summary-empty">0 pending</div></div></div></div><div id="suite-1" class="suite-container"><div class="suite-info"><div class="suite-path">/home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts</div><div class="suite-time warn">17.166s</div></div><div class="suite-tests"><div class="test-result passed"><div class="test-info"><div class="test-suitename"> </div><div class="test-title">TEST</div><div class="test-status">passed</div><div class="test-duration">6.769s</div></div></div></div><div class="suite-consolelog"><div class="suite-consolelog-header">Console Log</div><div class="suite-consolelog-item"><pre class="suite-consolelog-item-origin"> at Object.<anonymous> (/home/runner/work/public/public/packages/Bio/src/__jest__/test-node.ts:63:11)
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at Generator.next (<anonymous>)
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at fulfilled (/home/runner/work/public/public/packages/Bio/src/__jest__/test-node.ts:28:58)
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at processTicksAndRejections (internal/process/task_queues.js:97:5)</pre><pre class="suite-consolelog-item-message">Using web root: http://localhost:8080</pre></div><div class="suite-consolelog-item"><pre class="suite-consolelog-item-origin"> at /home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:24:11
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