@datagrok/bio 0.0.5 → 1.0.0

package/package.json

@@ -1,23 +1,27 @@
 {
   "name": "@datagrok/bio",
-  "beta": true,
+  "beta": false,
   "friendlyName": "Bio",
-  "version": "0.0.5",
-  "description": "",
+  "version": "1.0.0",
+  "description": "Bio is a [package](https://datagrok.ai/help/develop/develop#packages) for the [Datagrok](https://datagrok.ai) platform",
   "repository": {
     "type": "git",
     "url": "https://github.com/datagrok-ai/public.git",
     "directory": "packages/Bio"
   },
   "dependencies": {
-    "@datagrok-libraries/bio": "^0.0.10",
+    "@datagrok-libraries/bio": "^1.0.0",
     "cash-dom": "latest",
-    "datagrok-api": "^0.151.7",
+    "datagrok-api": "^1.0.0",
     "dayjs": "latest",
     "ts-loader": "^9.2.5",
     "typescript": "^4.4.2"
   },
   "devDependencies": {
+    "@typescript-eslint/eslint-plugin": "latest",
+    "@typescript-eslint/parser": "latest",
+    "eslint": "latest",
+    "eslint-config-google": "latest",
     "webpack": "latest",
     "webpack-cli": "latest"
   },
@@ -28,11 +32,16 @@
     "debug-sequences1": "grok publish --rebuild",
     "release-sequences1": "grok publish --rebuild --release",
     "build-sequences1": "webpack",
+    "local-bio": "grok publish local",
     "build": "webpack",
     "debug-sequences1-public": "grok publish public --rebuild",
     "release-sequences1-public": "grok publish public --rebuild --release",
     "debug-sequences1-local": "grok publish local --rebuild",
-    "release-sequences1-local": "grok publish local --rebuild --release"
+    "release-sequences1-local": "grok publish local --rebuild --release",
+    "lint": "eslint \"./src/**/*.ts\"",
+    "lint-fix": "eslint \"./src/**/*.ts\" --fix"
   },
-  "canEdit": [ "Developers" ]
+  "canEdit": [
+    "Developers"
+  ]
 }

package/src/package.ts

@@ -2,22 +2,24 @@
 import * as grok from 'datagrok-api/grok';
 import * as ui from 'datagrok-api/ui';
 import * as DG from 'datagrok-api/dg';
-import { SequenceAlignment, Aligned } from './seq_align';
-export let _package = new DG.Package();
+import {SequenceAlignment, Aligned} from './seq_align';
+
+export const _package = new DG.Package();
 
 import {WebLogo} from '@datagrok-libraries/bio/src/viewers/web-logo';
 
 //name: sequenceAlignment
 //input: string alignType {choices: ['Local alignment', 'Global alignment']}
+// eslint-disable-next-line max-len
 //input: string alignTable {choices: ['AUTO', 'NUCLEOTIDES', 'BLOSUM45', 'BLOSUM50','BLOSUM62','BLOSUM80','BLOSUM90','PAM30','PAM70','PAM250','SCHNEIDER','TRANS']}
 //input: double gap
 //input: string seq1
 //input: string seq2
-//output: object res 
-export function sequenceAlignment(alignType:string, alignTable:string, gap:number, seq1:string, seq2:string){
-    let toAlign = new SequenceAlignment(seq1,seq2,gap,alignTable);
-    let res = alignType == 'Local alignment' ? toAlign.smithWaterman() : toAlign.needlemanWunch();
-    return res
+//output: object res
+export function sequenceAlignment(alignType: string, alignTable: string, gap: number, seq1: string, seq2: string) {
+  const toAlign = new SequenceAlignment(seq1, seq2, gap, alignTable);
+  const res = alignType == 'Local alignment' ? toAlign.smithWaterman() : toAlign.needlemanWunch();
+  return res;
 }
 
 //name: WebLogo
@@ -25,5 +27,5 @@ export function sequenceAlignment(alignType:string, alignTable:string, gap:numbe
 //tags: viewer, panel
 //output: viewer result
 export function webLogoViewer() {
-    return new WebLogo();
-}
+  return new WebLogo();
+}

package/webpack.config.js

@@ -3,16 +3,24 @@ const path = require('path');
 module.exports = {
   mode: 'development',
   entry: {
-    package: './src/package.ts'
+    package: './src/package.ts',
   },
   resolve: {
-    fallback: { "url": false },
-    extensions: ['.wasm', '.mjs', '.js', '.json', '.ts', '.tsx']
+    fallback: {'url': false},
+    extensions: ['.wasm', '.mjs', '.ts', '.js', '.json', '.tsx'],
   },
   module: {
     rules: [
-      { test: /\.tsx?$/, loader: 'ts-loader' },
-      { test: /\.css$/, use: ['style-loader', 'css-loader'] }
+      {
+        test: /\.ts(x?)$/,
+        use: 'ts-loader',
+        exclude: /node_modules/,
+      },
+      {
+        test: /\.css$/,
+        use: ['style-loader', 'css-loader'],
+        exclude: /node_modules/,
+      },
     ],
   },
   devtool: 'inline-source-map',
@@ -28,7 +36,7 @@ module.exports = {
   },
   output: {
     filename: '[name].js',
-    library: 'sequences1',
+    library: 'bio',
     libraryTarget: 'var',
     path: path.resolve(__dirname, 'dist'),
   },