@datagrok-libraries/utils 0.0.9 → 0.0.15

package/tsconfig.json

@@ -1,71 +1,71 @@
-{
-  "compilerOptions": {
-    /* Visit https://aka.ms/tsconfig.json to read more about this file */
-
-    /* Basic Options */
-    // "incremental": true,                         /* Enable incremental compilation */
-    "target": "es2018",                                /* Specify ECMAScript target version: 'ES3' (default), 'ES5', 'ES2015', 'ES2016', 'ES2017', 'ES2018', 'ES2019', 'ES2020', or 'ESNEXT'. */
-    "module": "es2020",                             /* Specify module code generation: 'none', 'commonjs', 'amd', 'system', 'umd', 'es2015', 'es2020', or 'ESNext'. */
-    "lib": ["es2020", "dom"],                       /* Specify library files to be included in the compilation. */
-    // "allowJs": true,                             /* Allow javascript files to be compiled. */
-    // "checkJs": true,                             /* Report errors in .js files. */
-    // "jsx": "preserve",                           /* Specify JSX code generation: 'preserve', 'react-native', 'react', 'react-jsx' or 'react-jsxdev'. */
-     "declaration": true,                         /* Generates corresponding '.d.ts' file. */
-     "declarationMap": true,                      /* Generates a sourcemap for each corresponding '.d.ts' file. */
-    // "sourceMap": true,                           /* Generates corresponding '.map' file. */
-    // "outFile": "./",                             /* Concatenate and emit output to single file. */
-    // "outDir": "./",                              /* Redirect output structure to the directory. */
-    // "rootDir": "./",                             /* Specify the root directory of input files. Use to control the output directory structure with --outDir. */
-    // "composite": true,                           /* Enable project compilation */
-    // "tsBuildInfoFile": "./",                     /* Specify file to store incremental compilation information */
-    // "removeComments": true,                      /* Do not emit comments to output. */
-    // "noEmit": true,                              /* Do not emit outputs. */
-    // "importHelpers": true,                       /* Import emit helpers from 'tslib'. */
-    // "downlevelIteration": true,                  /* Provide full support for iterables in 'for-of', spread, and destructuring when targeting 'ES5' or 'ES3'. */
-    // "isolatedModules": true,                     /* Transpile each file as a separate module (similar to 'ts.transpileModule'). */
-
-    /* Strict Type-Checking Options */
-    "strict": true,                                 /* Enable all strict type-checking options. */
-    // "noImplicitAny": true,                       /* Raise error on expressions and declarations with an implied 'any' type. */
-    // "strictNullChecks": true,                    /* Enable strict null checks. */
-    // "strictFunctionTypes": true,                 /* Enable strict checking of function types. */
-    // "strictBindCallApply": true,                 /* Enable strict 'bind', 'call', and 'apply' methods on functions. */
-    // "strictPropertyInitialization": true,        /* Enable strict checking of property initialization in classes. */
-    // "noImplicitThis": true,                      /* Raise error on 'this' expressions with an implied 'any' type. */
-    // "alwaysStrict": true,                        /* Parse in strict mode and emit "use strict" for each source file. */
-
-    /* Additional Checks */
-    // "noUnusedLocals": true,                      /* Report errors on unused locals. */
-    // "noUnusedParameters": true,                  /* Report errors on unused parameters. */
-    // "noImplicitReturns": true,                   /* Report error when not all code paths in function return a value. */
-    // "noFallthroughCasesInSwitch": true,          /* Report errors for fallthrough cases in switch statement. */
-    // "noUncheckedIndexedAccess": true,            /* Include 'undefined' in index signature results */
-    // "noPropertyAccessFromIndexSignature": true,  /* Require undeclared properties from index signatures to use element accesses. */
-
-    /* Module Resolution Options */
-    "moduleResolution": "node",                     /* Specify module resolution strategy: 'node' (Node.js) or 'classic' (TypeScript pre-1.6). */
-    // "baseUrl": "./",                             /* Base directory to resolve non-absolute module names. */
-    // "paths": {},                                 /* A series of entries which re-map imports to lookup locations relative to the 'baseUrl'. */
-    // "rootDirs": [],                              /* List of root folders whose combined content represents the structure of the project at runtime. */
-    // "typeRoots": [],                             /* List of folders to include type definitions from. */
-    // "types": [],                                 /* Type declaration files to be included in compilation. */
-    // "allowSyntheticDefaultImports": true,        /* Allow default imports from modules with no default export. This does not affect code emit, just typechecking. */
-    "esModuleInterop": true,                        /* Enables emit interoperability between CommonJS and ES Modules via creation of namespace objects for all imports. Implies 'allowSyntheticDefaultImports'. */
-    // "preserveSymlinks": true,                    /* Do not resolve the real path of symlinks. */
-    // "allowUmdGlobalAccess": true,                /* Allow accessing UMD globals from modules. */
-
-    /* Source Map Options */
-    "sourceRoot": "",                            /* Specify the location where debugger should locate TypeScript files instead of source locations. */
-    "mapRoot": "",                               /* Specify the location where debugger should locate map files instead of generated locations. */
-    "inlineSourceMap": true,                     /* Emit a single file with source maps instead of having a separate file. */
-    "inlineSources": true,                       /* Emit the source alongside the sourcemaps within a single file; requires '--inlineSourceMap' or '--sourceMap' to be set. */
-
-    /* Experimental Options */
-    // "experimentalDecorators": true,              /* Enables experimental support for ES7 decorators. */
-    // "emitDecoratorMetadata": true,               /* Enables experimental support for emitting type metadata for decorators. */
-
-    /* Advanced Options */
-    "skipLibCheck": true,                          /* Skip type checking of declaration files. */
-    "forceConsistentCasingInFileNames": true        /* Disallow inconsistently-cased references to the same file. */
-  }
-}
+{
+  "compilerOptions": {
+    /* Visit https://aka.ms/tsconfig.json to read more about this file */
+
+    /* Basic Options */
+    // "incremental": true,                         /* Enable incremental compilation */
+    "target": "es2018",                                /* Specify ECMAScript target version: 'ES3' (default), 'ES5', 'ES2015', 'ES2016', 'ES2017', 'ES2018', 'ES2019', 'ES2020', or 'ESNEXT'. */
+    "module": "es2020",                             /* Specify module code generation: 'none', 'commonjs', 'amd', 'system', 'umd', 'es2015', 'es2020', or 'ESNext'. */
+    "lib": ["es2020", "dom"],                       /* Specify library files to be included in the compilation. */
+    // "allowJs": true,                             /* Allow javascript files to be compiled. */
+    // "checkJs": true,                             /* Report errors in .js files. */
+    // "jsx": "preserve",                           /* Specify JSX code generation: 'preserve', 'react-native', 'react', 'react-jsx' or 'react-jsxdev'. */
+     "declaration": true,                         /* Generates corresponding '.d.ts' file. */
+     "declarationMap": true,                      /* Generates a sourcemap for each corresponding '.d.ts' file. */
+    // "sourceMap": true,                           /* Generates corresponding '.map' file. */
+    // "outFile": "./",                             /* Concatenate and emit output to single file. */
+    // "outDir": "./",                              /* Redirect output structure to the directory. */
+    // "rootDir": "./",                             /* Specify the root directory of input files. Use to control the output directory structure with --outDir. */
+    // "composite": true,                           /* Enable project compilation */
+    // "tsBuildInfoFile": "./",                     /* Specify file to store incremental compilation information */
+    // "removeComments": true,                      /* Do not emit comments to output. */
+    // "noEmit": true,                              /* Do not emit outputs. */
+    // "importHelpers": true,                       /* Import emit helpers from 'tslib'. */
+    // "downlevelIteration": true,                  /* Provide full support for iterables in 'for-of', spread, and destructuring when targeting 'ES5' or 'ES3'. */
+    // "isolatedModules": true,                     /* Transpile each file as a separate module (similar to 'ts.transpileModule'). */
+
+    /* Strict Type-Checking Options */
+    "strict": true,                                 /* Enable all strict type-checking options. */
+    // "noImplicitAny": true,                       /* Raise error on expressions and declarations with an implied 'any' type. */
+    // "strictNullChecks": true,                    /* Enable strict null checks. */
+    // "strictFunctionTypes": true,                 /* Enable strict checking of function types. */
+    // "strictBindCallApply": true,                 /* Enable strict 'bind', 'call', and 'apply' methods on functions. */
+    // "strictPropertyInitialization": true,        /* Enable strict checking of property initialization in classes. */
+    // "noImplicitThis": true,                      /* Raise error on 'this' expressions with an implied 'any' type. */
+    // "alwaysStrict": true,                        /* Parse in strict mode and emit "use strict" for each source file. */
+
+    /* Additional Checks */
+    // "noUnusedLocals": true,                      /* Report errors on unused locals. */
+    // "noUnusedParameters": true,                  /* Report errors on unused parameters. */
+    // "noImplicitReturns": true,                   /* Report error when not all code paths in function return a value. */
+    // "noFallthroughCasesInSwitch": true,          /* Report errors for fallthrough cases in switch statement. */
+    // "noUncheckedIndexedAccess": true,            /* Include 'undefined' in index signature results */
+    // "noPropertyAccessFromIndexSignature": true,  /* Require undeclared properties from index signatures to use element accesses. */
+
+    /* Module Resolution Options */
+    "moduleResolution": "node",                     /* Specify module resolution strategy: 'node' (Node.js) or 'classic' (TypeScript pre-1.6). */
+    // "baseUrl": "./",                             /* Base directory to resolve non-absolute module names. */
+    // "paths": {},                                 /* A series of entries which re-map imports to lookup locations relative to the 'baseUrl'. */
+    // "rootDirs": [],                              /* List of root folders whose combined content represents the structure of the project at runtime. */
+    // "typeRoots": [],                             /* List of folders to include type definitions from. */
+    // "types": [],                                 /* Type declaration files to be included in compilation. */
+    // "allowSyntheticDefaultImports": true,        /* Allow default imports from modules with no default export. This does not affect code emit, just typechecking. */
+    "esModuleInterop": true,                        /* Enables emit interoperability between CommonJS and ES Modules via creation of namespace objects for all imports. Implies 'allowSyntheticDefaultImports'. */
+    // "preserveSymlinks": true,                    /* Do not resolve the real path of symlinks. */
+    // "allowUmdGlobalAccess": true,                /* Allow accessing UMD globals from modules. */
+
+    /* Source Map Options */
+    "sourceRoot": "",                            /* Specify the location where debugger should locate TypeScript files instead of source locations. */
+    "mapRoot": "",                               /* Specify the location where debugger should locate map files instead of generated locations. */
+    "inlineSourceMap": true,                     /* Emit a single file with source maps instead of having a separate file. */
+    "inlineSources": true,                       /* Emit the source alongside the sourcemaps within a single file; requires '--inlineSourceMap' or '--sourceMap' to be set. */
+
+    /* Experimental Options */
+    // "experimentalDecorators": true,              /* Enables experimental support for ES7 decorators. */
+    // "emitDecoratorMetadata": true,               /* Enables experimental support for emitting type metadata for decorators. */
+
+    /* Advanced Options */
+    "skipLibCheck": true,                          /* Skip type checking of declaration files. */
+    "forceConsistentCasingInFileNames": true        /* Disallow inconsistently-cased references to the same file. */
+  }
+}

package/src/reduce-dimensionality.d.ts

@@ -1,38 +0,0 @@
-import { Options, Coordinates } from './type_declarations';
-/**
- * Unified class implementing different dimensionality reduction methods.
- *
- * @export
- * @class DimensionalityReducer
- */
-export declare class DimensionalityReducer {
-    private reducer;
-    static methods: string[];
-    private measurer;
-    /**
-     * Creates an instance of DimensionalityReducer.
-     * @param {any[]} data Vectors to embed.
-     * @param {string} method Embedding method to be applied
-     * @param {string} metric Distance metric to be computed between each of the vectors.
-     * @param {Options} [options] Options to pass to the implementing embedders.
-     * @memberof DimensionalityReducer
-     */
-    constructor(data: any[], method: string, metric: string, options?: Options);
-    /**
-     * Embeds the data given into the two-dimensional space using the chosen method.
-     *
-     * @param {boolean} transpose Whether to transform coordinates to have columns-first orientation.
-     * @throws {Error} If the embedding method was not found.
-     * @return {Coordinates} Cartesian coordinate of this embedding.
-     * @memberof DimensionalityReducer
-     */
-    transform(transpose?: boolean): Coordinates;
-    /**
-     * Returns dimensionality reduction methods available.
-     *
-     * @readonly
-     * @memberof DimensionalityReducer
-     */
-    static get availableMethods(): string[];
-}
-//# sourceMappingURL=reduce-dimensionality.d.ts.map

package/src/reduce-dimensionality.d.ts.map

@@ -1 +0,0 @@
-{"version":3,"file":"reduce-dimensionality.d.ts","sourceRoot":"","sources":["reduce-dimensionality.ts"],"names":[],"mappings":"AAGA,OAAO,EAAC,OAAO,EAAkB,WAAW,EAA0B,MAAM,qBAAqB,CAAC;AAuMlG;;;;;GAKG;AACH,qBAAa,qBAAqB;IAChC,OAAO,CAAC,OAAO,CAAsB;IACrC,OAAc,OAAO,EAAE,MAAM,EAAE,CAAoC;IACnE,OAAO,CAAC,QAAQ,CAAW;IAE3B;;;;;;;OAOG;gBACS,IAAI,EAAE,GAAG,EAAE,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,OAAO;IA2B1E;;;;;;;OAOG;IACI,SAAS,CAAC,SAAS,GAAE,OAAe,GAAG,WAAW;IAYzD;;;;;OAKG;IACH,MAAM,KAAK,gBAAgB,aAE1B;CACF"}

package/src/reduce-dimensionality.js

@@ -1,233 +0,0 @@
-import * as umj from 'umap-js';
-import { TSNE } from '@keckelt/tsne';
-import { Vector } from './type_declarations';
-import { calcDistanceMatrix, transposeMatrix } from './operations';
-import { SPEBase, PSPEBase } from './spe';
-import { Measurer } from './string-measure';
-import { AlignedSequenceEncoder } from './sequence-encoder';
-import { assert } from './operations';
-/**
- * Abstract dimensionality reducer.
- *
- * @abstract
- * @class Reducer
- */
-class Reducer {
-    /**
-     * Creates an instance of Reducer.
-     * @param {Options} options Options to pass to the constructor.
-     * @memberof Reducer
-     */
-    constructor(options) {
-        this.data = options.data;
-    }
-}
-/**
- * Implements t-SNE dimensionality reduction.
- *
- * @class TSNEReducer
- * @extends {Reducer}
- */
-class TSNEReducer extends Reducer {
-    /**
-     * Creates an instance of TSNEReducer.
-     * @param {Options} options Options to pass to the constructor.
-     * @memberof TSNEReducer
-     */
-    constructor(options) {
-        var _a;
-        super(options);
-        this.reducer = new TSNE(options);
-        this.iterations = (_a = options === null || options === void 0 ? void 0 : options.iterations) !== null && _a !== void 0 ? _a : 100;
-        this.distance = options.distance;
-    }
-    /**
-     * Embeds the data given into the two-dimensional space using t-SNE method.
-     * @return {Coordinates} Cartesian coordinate of this embedding.
-     */
-    transform() {
-        this.reducer.initDataDist(calcDistanceMatrix(this.data, this.distance));
-        for (let i = 0; i < this.iterations; ++i) {
-            this.reducer.step(); // every time you call this, solution gets better
-        }
-        return this.reducer.getSolution();
-    }
-}
-/**
- * Implements UMAP dimensionality reduction.
- *
- * @class UMAPReducer
- * @extends {Reducer}
- */
-class UMAPReducer extends Reducer {
-    /**
-     * Creates an instance of UMAPReducer.
-     * @param {Options} options Options to pass to the constructor.
-     * @memberof UMAPReducer
-     */
-    constructor(options) {
-        super(options);
-        assert('distanceFn' in options);
-        this.encoder = new AlignedSequenceEncoder();
-        this.distanceFn = options.distanceFn;
-        this.vectors = [];
-        options.distanceFn = this._encodedDistance.bind(this);
-        this.reducer = new umj.UMAP(options);
-    }
-    /**
-     * Custom distance wrapper to have numeric inputs instead of string ones.
-     *
-     * @protected
-     * @param {number[]} a The first item.
-     * @param {number[]} b The first item.
-     * @return {number} Distance metric.
-     * @memberof UMAPReducer
-     */
-    _encodedDistance(a, b) {
-        return this.distanceFn(this.data[a[0]], this.data[b[0]]);
-    }
-    /**
-     * Encodes the input data as a vector of indices.
-     *
-     * @protected
-     * @memberof UMAPReducer
-     */
-    _encode() {
-        for (let i = 0; i < this.data.length; ++i) {
-            this.vectors.push([i]);
-        }
-    }
-    /**
-     * Embeds the data given into the two-dimensional space using UMAP method.
-     * @return {Coordinates} Cartesian coordinate of this embedding.
-     */
-    transform() {
-        this._encode();
-        const embedding = this.reducer.fit(this.vectors);
-        function arrayCast2Coordinates(data) {
-            return new Array(data.length).fill(0).map((_, i) => (Vector.from(data[i])));
-        }
-        return arrayCast2Coordinates(embedding);
-    }
-}
-/**
- * Implements original SPE dimensionality reduction.
- *
- * @class SPEReducer
- * @extends {Reducer}
- */
-class SPEReducer extends Reducer {
-    /**
-     * Creates an instance of SPEReducer.
-     * @param {Options} options Options to pass to the constructor.
-     * @memberof SPEReducer
-     */
-    constructor(options) {
-        super(options);
-        this.reducer = new SPEBase(options);
-    }
-    /**
-     * Embeds the data given into the two-dimensional space using the original SPE method.
-     * @return {Coordinates} Cartesian coordinate of this embedding.
-     */
-    transform() {
-        return this.reducer.embed(this.data);
-    }
-}
-/**
- * Implements modified SPE dimensionality reduction.
- *
- * @class PSPEReducer
- * @extends {Reducer}
- */
-class PSPEReducer extends Reducer {
-    /**
-     * Creates an instance of PSPEReducer.
-     * @param {Options} options Options to pass to the constructor.
-     * @memberof PSPEReducer
-     */
-    constructor(options) {
-        super(options);
-        this.reducer = new PSPEBase(options);
-    }
-    /**
-     * Embeds the data given into the two-dimensional space using the modified SPE method.
-     * @return {Coordinates} Cartesian coordinate of this embedding.
-     */
-    transform() {
-        return this.reducer.embed(this.data);
-    }
-}
-/**
- * Unified class implementing different dimensionality reduction methods.
- *
- * @export
- * @class DimensionalityReducer
- */
-export class DimensionalityReducer {
-    /**
-     * Creates an instance of DimensionalityReducer.
-     * @param {any[]} data Vectors to embed.
-     * @param {string} method Embedding method to be applied
-     * @param {string} metric Distance metric to be computed between each of the vectors.
-     * @param {Options} [options] Options to pass to the implementing embedders.
-     * @memberof DimensionalityReducer
-     */
-    constructor(data, method, metric, options) {
-        var _a;
-        assert(DimensionalityReducer.availableMethods.includes(method), `The method '${method}' is not supported`);
-        this.measurer = new Measurer(metric);
-        const measure = this.measurer.getMeasure();
-        if (method == 'UMAP') {
-            this.reducer = new UMAPReducer({
-                ...{ data: data },
-                ...{ distanceFn: measure },
-                ...{ nEpochs: options === null || options === void 0 ? void 0 : options.cycles },
-                ...options
-            });
-        }
-        else if (method == 't-SNE') {
-            this.reducer = new TSNEReducer({
-                ...{ data: data },
-                ...{ distance: measure },
-                ...{ iterations: (_a = options === null || options === void 0 ? void 0 : options.cycles) !== null && _a !== void 0 ? _a : undefined },
-                ...options,
-            });
-        }
-        else if (method == 'SPE') {
-            this.reducer = new SPEReducer({ ...{ data: data }, ...{ distance: measure }, ...options });
-        }
-        else {
-            this.reducer = new PSPEReducer({ ...{ data: data }, ...{ distance: measure }, ...options });
-        }
-    }
-    /**
-     * Embeds the data given into the two-dimensional space using the chosen method.
-     *
-     * @param {boolean} transpose Whether to transform coordinates to have columns-first orientation.
-     * @throws {Error} If the embedding method was not found.
-     * @return {Coordinates} Cartesian coordinate of this embedding.
-     * @memberof DimensionalityReducer
-     */
-    transform(transpose = false) {
-        if (this.reducer == undefined) {
-            throw new Error('Reducer was not defined.');
-        }
-        let embedding = this.reducer.transform();
-        if (transpose) {
-            embedding = transposeMatrix(embedding);
-        }
-        return embedding;
-    }
-    /**
-     * Returns dimensionality reduction methods available.
-     *
-     * @readonly
-     * @memberof DimensionalityReducer
-     */
-    static get availableMethods() {
-        return DimensionalityReducer.methods;
-    }
-}
-DimensionalityReducer.methods = ['UMAP', 't-SNE', 'SPE', 'pSPE'];
-//# sourceMappingURL=data:application/json;base64,{"version":3,"file":"reduce-dimensionality.js","sourceRoot":"","sources":["reduce-dimensionality.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,GAAG,MAAM,SAAS,CAAC;AAC/B,OAAO,EAAC,IAAI,EAAC,MAAM,eAAe,CAAC;AAEnC,OAAO,EAAuC,MAAM,EAAkB,MAAM,qBAAqB,CAAC;AAClG,OAAO,EAAC,kBAAkB,EAAE,eAAe,EAAC,MAAM,cAAc,CAAC;AACjE,OAAO,EAAC,OAAO,EAAE,QAAQ,EAAC,MAAM,OAAO,CAAC;AACxC,OAAO,EAAC,QAAQ,EAAC,MAAM,kBAAkB,CAAC;AAC1C,OAAO,EAAC,sBAAsB,EAAC,MAAM,oBAAoB,CAAC;AAC1D,OAAO,EAAC,MAAM,EAAC,MAAM,cAAc,CAAC;AAEpC;;;;;GAKG;AACH,MAAe,OAAO;IAGpB;;;;OAIG;IACH,YAAY,OAAgB;QAC1B,IAAI,CAAC,IAAI,GAAG,OAAO,CAAC,IAAI,CAAC;IAC3B,CAAC;CAUF;AAED;;;;;GAKG;AACH,MAAM,WAAY,SAAQ,OAAO;IAK/B;;;;OAIG;IACH,YAAY,OAAgB;;QAC1B,KAAK,CAAC,OAAO,CAAC,CAAC;QACf,IAAI,CAAC,OAAO,GAAG,IAAI,IAAI,CAAC,OAAO,CAAC,CAAC;QACjC,IAAI,CAAC,UAAU,GAAG,MAAA,OAAO,aAAP,OAAO,uBAAP,OAAO,CAAE,UAAU,mCAAI,GAAG,CAAC;QAC7C,IAAI,CAAC,QAAQ,GAAG,OAAO,CAAC,QAAQ,CAAC;IACnC,CAAC;IAED;;;OAGG;IACI,SAAS;QACd,IAAI,CAAC,OAAO,CAAC,YAAY,CAAC,kBAAkB,CAAC,IAAI,CAAC,IAAI,EAAE,IAAI,CAAC,QAAQ,CAAC,CAAC,CAAC;QAExE,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,IAAI,CAAC,UAAU,EAAE,EAAE,CAAC,EAAE;YACxC,IAAI,CAAC,OAAO,CAAC,IAAI,EAAE,CAAC,CAAC,iDAAiD;SACvE;QACD,OAAO,IAAI,CAAC,OAAO,CAAC,WAAW,EAAE,CAAC;IACpC,CAAC;CACF;AAED;;;;;GAKG;AACH,MAAM,WAAY,SAAQ,OAAO;IAM/B;;;;OAIG;IACH,YAAY,OAAgB;QAC1B,KAAK,CAAC,OAAO,CAAC,CAAC;QAEf,MAAM,CAAC,YAAY,IAAI,OAAO,CAAC,CAAC;QAEhC,IAAI,CAAC,OAAO,GAAG,IAAI,sBAAsB,EAAE,CAAC;QAC5C,IAAI,CAAC,UAAU,GAAG,OAAO,CAAC,UAAU,CAAC;QACrC,IAAI,CAAC,OAAO,GAAG,EAAE,CAAC;QAClB,OAAO,CAAC,UAAU,GAAG,IAAI,CAAC,gBAAgB,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;QACtD,IAAI,CAAC,OAAO,GAAG,IAAI,GAAG,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC;IACvC,CAAC;IAED;;;;;;;;OAQG;IACO,gBAAgB,CAAC,CAAW,EAAE,CAAW;QACjD,OAAO,IAAI,CAAC,UAAU,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,EAAE,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;IAC3D,CAAC;IAED;;;;;OAKG;IACO,OAAO;QACf,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,IAAI,CAAC,IAAI,CAAC,MAAM,EAAE,EAAE,CAAC,EAAE;YACzC,IAAI,CAAC,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;SACxB;IACH,CAAC;IAED;;;OAGG;IACI,SAAS;QACd,IAAI,CAAC,OAAO,EAAE,CAAC;QAEf,MAAM,SAAS,GAAG,IAAI,CAAC,OAAO,CAAC,GAAG,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC;QAEjD,SAAS,qBAAqB,CAAC,IAAgB;YAC7C,OAAO,IAAI,KAAK,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,MAAM,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;QAC9E,CAAC;QAED,OAAO,qBAAqB,CAAC,SAAS,CAAC,CAAC;IAC1C,CAAC;CACF;AAED;;;;;GAKG;AACH,MAAM,UAAW,SAAQ,OAAO;IAG9B;;;;OAIG;IACH,YAAY,OAAgB;QAC1B,KAAK,CAAC,OAAO,CAAC,CAAC;QACf,IAAI,CAAC,OAAO,GAAG,IAAI,OAAO,CAAC,OAAO,CAAC,CAAC;IACtC,CAAC;IAED;;;OAGG;IACI,SAAS;QACd,OAAO,IAAI,CAAC,OAAO,CAAC,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;IACvC,CAAC;CACF;AAED;;;;;GAKG;AACH,MAAM,WAAY,SAAQ,OAAO;IAG/B;;;;OAIG;IACH,YAAY,OAAgB;QAC1B,KAAK,CAAC,OAAO,CAAC,CAAC;QACf,IAAI,CAAC,OAAO,GAAG,IAAI,QAAQ,CAAC,OAAO,CAAC,CAAC;IACvC,CAAC;IAED;;;OAGG;IACI,SAAS;QACd,OAAO,IAAI,CAAC,OAAO,CAAC,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;IACvC,CAAC;CACF;AAED;;;;;GAKG;AACH,MAAM,OAAO,qBAAqB;IAKhC;;;;;;;OAOG;IACH,YAAY,IAAW,EAAE,MAAc,EAAE,MAAc,EAAE,OAAiB;;QACxE,MAAM,CAAC,qBAAqB,CAAC,gBAAgB,CAAC,QAAQ,CAAC,MAAM,CAAC,EAAE,eAAe,MAAM,oBAAoB,CAAC,CAAC;QAE3G,IAAI,CAAC,QAAQ,GAAG,IAAI,QAAQ,CAAC,MAAM,CAAC,CAAC;QACrC,MAAM,OAAO,GAAG,IAAI,CAAC,QAAQ,CAAC,UAAU,EAAE,CAAA;QAE1C,IAAI,MAAM,IAAI,MAAM,EAAE;YACpB,IAAI,CAAC,OAAO,GAAG,IAAI,WAAW,CAAC;gBAC7B,GAAG,EAAC,IAAI,EAAE,IAAI,EAAC;gBACf,GAAG,EAAC,UAAU,EAAE,OAAO,EAAC;gBACxB,GAAG,EAAC,OAAO,EAAE,OAAO,aAAP,OAAO,uBAAP,OAAO,CAAE,MAAM,EAAC;gBAC7B,GAAG,OAAO;aACX,CAAC,CAAC;SACJ;aAAM,IAAI,MAAM,IAAI,OAAO,EAAE;YAC5B,IAAI,CAAC,OAAO,GAAG,IAAI,WAAW,CAAC;gBAC7B,GAAG,EAAC,IAAI,EAAE,IAAI,EAAC;gBACf,GAAG,EAAC,QAAQ,EAAE,OAAO,EAAC;gBACtB,GAAG,EAAC,UAAU,EAAE,MAAA,OAAO,aAAP,OAAO,uBAAP,OAAO,CAAE,MAAM,mCAAI,SAAS,EAAC;gBAC7C,GAAG,OAAO;aACX,CAAC,CAAC;SACJ;aAAM,IAAI,MAAM,IAAI,KAAK,EAAE;YAC1B,IAAI,CAAC,OAAO,GAAG,IAAI,UAAU,CAAC,EAAC,GAAG,EAAC,IAAI,EAAE,IAAI,EAAC,EAAE,GAAG,EAAC,QAAQ,EAAE,OAAO,EAAC,EAAE,GAAG,OAAO,EAAC,CAAC,CAAC;SACtF;aAAM;YACL,IAAI,CAAC,OAAO,GAAG,IAAI,WAAW,CAAC,EAAC,GAAG,EAAC,IAAI,EAAE,IAAI,EAAC,EAAE,GAAG,EAAC,QAAQ,EAAE,OAAO,EAAC,EAAE,GAAG,OAAO,EAAC,CAAC,CAAC;SACvF;IACH,CAAC;IAED;;;;;;;OAOG;IACI,SAAS,CAAC,YAAqB,KAAK;QACzC,IAAI,IAAI,CAAC,OAAO,IAAI,SAAS,EAAE;YAC7B,MAAM,IAAI,KAAK,CAAC,0BAA0B,CAAC,CAAC;SAC7C;QACD,IAAI,SAAS,GAAG,IAAI,CAAC,OAAO,CAAC,SAAS,EAAE,CAAC;QAEzC,IAAI,SAAS,EAAE;YACb,SAAS,GAAG,eAAe,CAAC,SAAS,CAAC,CAAC;SACxC;QACD,OAAO,SAAS,CAAC;IACnB,CAAC;IAED;;;;;OAKG;IACH,MAAM,KAAK,gBAAgB;QACzB,OAAO,qBAAqB,CAAC,OAAO,CAAC;IACvC,CAAC;;AAlEa,6BAAO,GAAa,CAAC,MAAM,EAAE,OAAO,EAAE,KAAK,EAAE,MAAM,CAAC,CAAC","sourcesContent":["import * as umj from 'umap-js';\r\nimport {TSNE} from '@keckelt/tsne';\r\n\r\nimport {Options, DistanceMetric, Coordinates, Vector, Vectors, Matrix} from './type_declarations';\r\nimport {calcDistanceMatrix, transposeMatrix} from './operations';\r\nimport {SPEBase, PSPEBase} from './spe';\r\nimport {Measurer} from './string-measure';\r\nimport {AlignedSequenceEncoder} from './sequence-encoder';\r\nimport {assert} from './operations';\r\n\r\n/**\r\n * Abstract dimensionality reducer.\r\n *\r\n * @abstract\r\n * @class Reducer\r\n */\r\nabstract class Reducer {\r\n  protected data: Vectors;\r\n\r\n  /**\r\n   * Creates an instance of Reducer.\r\n   * @param {Options} options Options to pass to the constructor.\r\n   * @memberof Reducer\r\n   */\r\n  constructor(options: Options) {\r\n    this.data = options.data;\r\n  }\r\n\r\n  /**\r\n   * Is to embed the data given into the two-dimensional space.\r\n   *\r\n   * @abstract\r\n   * @return {Coordinates} Cartesian coordinate of this embedding.\r\n   * @memberof Reducer\r\n   */\r\n  abstract transform(): Coordinates;\r\n}\r\n\r\n/**\r\n * Implements t-SNE dimensionality reduction.\r\n *\r\n * @class TSNEReducer\r\n * @extends {Reducer}\r\n */\r\nclass TSNEReducer extends Reducer {\r\n  protected reducer: TSNE;\r\n  protected iterations: number;\r\n  protected distance: DistanceMetric;\r\n\r\n  /**\r\n   * Creates an instance of TSNEReducer.\r\n   * @param {Options} options Options to pass to the constructor.\r\n   * @memberof TSNEReducer\r\n   */\r\n  constructor(options: Options) {\r\n    super(options);\r\n    this.reducer = new TSNE(options);\r\n    this.iterations = options?.iterations ?? 100;\r\n    this.distance = options.distance;\r\n  }\r\n\r\n  /**\r\n   * Embeds the data given into the two-dimensional space using t-SNE method.\r\n   * @return {Coordinates} Cartesian coordinate of this embedding.\r\n   */\r\n  public transform(): Coordinates {\r\n    this.reducer.initDataDist(calcDistanceMatrix(this.data, this.distance));\r\n\r\n    for (let i = 0; i < this.iterations; ++i) {\r\n      this.reducer.step(); // every time you call this, solution gets better\r\n    }\r\n    return this.reducer.getSolution();\r\n  }\r\n}\r\n\r\n/**\r\n * Implements UMAP dimensionality reduction.\r\n *\r\n * @class UMAPReducer\r\n * @extends {Reducer}\r\n */\r\nclass UMAPReducer extends Reducer {\r\n  protected reducer: umj.UMAP;\r\n  protected encoder: AlignedSequenceEncoder;\r\n  protected distanceFn: Function;\r\n  protected vectors: number[][];\r\n\r\n  /**\r\n   * Creates an instance of UMAPReducer.\r\n   * @param {Options} options Options to pass to the constructor.\r\n   * @memberof UMAPReducer\r\n   */\r\n  constructor(options: Options) {\r\n    super(options);\r\n\r\n    assert('distanceFn' in options);\r\n\r\n    this.encoder = new AlignedSequenceEncoder();\r\n    this.distanceFn = options.distanceFn;\r\n    this.vectors = [];\r\n    options.distanceFn = this._encodedDistance.bind(this);\r\n    this.reducer = new umj.UMAP(options);\r\n  }\r\n\r\n  /**\r\n   * Custom distance wrapper to have numeric inputs instead of string ones.\r\n   *\r\n   * @protected\r\n   * @param {number[]} a The first item.\r\n   * @param {number[]} b The first item.\r\n   * @return {number} Distance metric.\r\n   * @memberof UMAPReducer\r\n   */\r\n  protected _encodedDistance(a: number[], b: number[]): number {\r\n    return this.distanceFn(this.data[a[0]], this.data[b[0]]);\r\n  }\r\n\r\n  /**\r\n   * Encodes the input data as a vector of indices.\r\n   *\r\n   * @protected\r\n   * @memberof UMAPReducer\r\n   */\r\n  protected _encode() {\r\n    for (let i = 0; i < this.data.length; ++i) {\r\n      this.vectors.push([i]);\r\n    }\r\n  }\r\n\r\n  /**\r\n   * Embeds the data given into the two-dimensional space using UMAP method.\r\n   * @return {Coordinates} Cartesian coordinate of this embedding.\r\n   */\r\n  public transform(): Coordinates {\r\n    this._encode();\r\n\r\n    const embedding = this.reducer.fit(this.vectors);\r\n\r\n    function arrayCast2Coordinates(data: number[][]): Coordinates {\r\n      return new Array(data.length).fill(0).map((_, i) => (Vector.from(data[i])));\r\n    }\r\n\r\n    return arrayCast2Coordinates(embedding);\r\n  }\r\n}\r\n\r\n/**\r\n * Implements original SPE dimensionality reduction.\r\n *\r\n * @class SPEReducer\r\n * @extends {Reducer}\r\n */\r\nclass SPEReducer extends Reducer {\r\n  protected reducer: SPEBase;\r\n\r\n  /**\r\n   * Creates an instance of SPEReducer.\r\n   * @param {Options} options Options to pass to the constructor.\r\n   * @memberof SPEReducer\r\n   */\r\n  constructor(options: Options) {\r\n    super(options);\r\n    this.reducer = new SPEBase(options);\r\n  }\r\n\r\n  /**\r\n   * Embeds the data given into the two-dimensional space using the original SPE method.\r\n   * @return {Coordinates} Cartesian coordinate of this embedding.\r\n   */\r\n  public transform(): Coordinates {\r\n    return this.reducer.embed(this.data);\r\n  }\r\n}\r\n\r\n/**\r\n * Implements modified SPE dimensionality reduction.\r\n *\r\n * @class PSPEReducer\r\n * @extends {Reducer}\r\n */\r\nclass PSPEReducer extends Reducer {\r\n  protected reducer: PSPEBase;\r\n\r\n  /**\r\n   * Creates an instance of PSPEReducer.\r\n   * @param {Options} options Options to pass to the constructor.\r\n   * @memberof PSPEReducer\r\n   */\r\n  constructor(options: Options) {\r\n    super(options);\r\n    this.reducer = new PSPEBase(options);\r\n  }\r\n\r\n  /**\r\n   * Embeds the data given into the two-dimensional space using the modified SPE method.\r\n   * @return {Coordinates} Cartesian coordinate of this embedding.\r\n   */\r\n  public transform(): Coordinates {\r\n    return this.reducer.embed(this.data);\r\n  }\r\n}\r\n\r\n/**\r\n * Unified class implementing different dimensionality reduction methods.\r\n *\r\n * @export\r\n * @class DimensionalityReducer\r\n */\r\nexport class DimensionalityReducer {\r\n  private reducer: Reducer | undefined;\r\n  public static methods: string[] = ['UMAP', 't-SNE', 'SPE', 'pSPE'];\r\n  private measurer: Measurer;\r\n\r\n  /**\r\n   * Creates an instance of DimensionalityReducer.\r\n   * @param {any[]} data Vectors to embed.\r\n   * @param {string} method Embedding method to be applied\r\n   * @param {string} metric Distance metric to be computed between each of the vectors.\r\n   * @param {Options} [options] Options to pass to the implementing embedders.\r\n   * @memberof DimensionalityReducer\r\n   */\r\n  constructor(data: any[], method: string, metric: string, options?: Options) {\r\n    assert(DimensionalityReducer.availableMethods.includes(method), `The method '${method}' is not supported`);\r\n\r\n    this.measurer = new Measurer(metric);\r\n    const measure = this.measurer.getMeasure()\r\n\r\n    if (method == 'UMAP') {\r\n      this.reducer = new UMAPReducer({\r\n        ...{data: data}, \r\n        ...{distanceFn: measure}, \r\n        ...{nEpochs: options?.cycles},\r\n        ...options\r\n      });\r\n    } else if (method == 't-SNE') {\r\n      this.reducer = new TSNEReducer({\r\n        ...{data: data},\r\n        ...{distance: measure},\r\n        ...{iterations: options?.cycles ?? undefined},\r\n        ...options,\r\n      });\r\n    } else if (method == 'SPE') {\r\n      this.reducer = new SPEReducer({...{data: data}, ...{distance: measure}, ...options});\r\n    } else {\r\n      this.reducer = new PSPEReducer({...{data: data}, ...{distance: measure}, ...options});\r\n    }\r\n  }\r\n\r\n  /**\r\n   * Embeds the data given into the two-dimensional space using the chosen method.\r\n   *\r\n   * @param {boolean} transpose Whether to transform coordinates to have columns-first orientation.\r\n   * @throws {Error} If the embedding method was not found.\r\n   * @return {Coordinates} Cartesian coordinate of this embedding.\r\n   * @memberof DimensionalityReducer\r\n   */\r\n  public transform(transpose: boolean = false): Coordinates {\r\n    if (this.reducer == undefined) {\r\n      throw new Error('Reducer was not defined.');\r\n    }\r\n    let embedding = this.reducer.transform();\r\n\r\n    if (transpose) {\r\n      embedding = transposeMatrix(embedding);\r\n    }\r\n    return embedding;\r\n  }\r\n\r\n  /**\r\n   * Returns dimensionality reduction methods available.\r\n   *\r\n   * @readonly\r\n   * @memberof DimensionalityReducer\r\n   */\r\n  static get availableMethods() {\r\n    return DimensionalityReducer.methods;\r\n  }\r\n}\r\n"]}

package/src/sequence-encoder.d.ts

@@ -1,59 +0,0 @@
-/**
- * Class to categorial encode/decode aligned amino acid residues sequence.
- *
- * @export
- * @class AlignedSequenceEncoder
- */
-export declare class AlignedSequenceEncoder {
-    protected aa2num: {
-        [name: string]: number;
-    };
-    protected num2aa: {
-        [code: number]: string;
-    };
-    constructor();
-    /**
-     * Truncate NH2 and -COOH terminals of the given sequence.
-     *
-     * @static
-     * @param {string} seq The sequence provided.
-     * @return {string} Truncated sequence.
-     * @memberof AlignedSequenceEncoder
-     */
-    static _truncateSequence(seq: string): string;
-    /**
-     * Cuts auxiliary defises before a residue.
-     *
-     * @static
-     * @param {string} seq The sequence to process.
-     * @return {string} Processed sequence.
-     * @memberof AlignedSequenceEncoder
-     */
-    static _dropDefises(seq: string): string;
-    /**
-     * Performs truncation and cutting auxiliary defises.
-     *
-     * @static
-     * @param {string} sequence The sequence work under process.
-     * @return {string} Result of cleaning.
-     * @memberof AlignedSequenceEncoder
-     */
-    static clean(sequence: string): string;
-    /**
-     * Categorial encode of the sequence provided.
-     *
-     * @param {string} sequence The sequence.
-     * @return {number[]} Encoded vector.
-     * @memberof AlignedSequenceEncoder
-     */
-    encode(sequence: string): number[];
-    /**
-     * Decode the encoded vector into the sequence back.
-     *
-     * @param {number[]} value The vector encoded.
-     * @return {string} Decoded sequence.
-     * @memberof AlignedSequenceEncoder
-     */
-    decode(value: number[]): string;
-}
-//# sourceMappingURL=sequence-encoder.d.ts.map

package/src/sequence-encoder.d.ts.map

@@ -1 +0,0 @@
-{"version":3,"file":"sequence-encoder.d.ts","sourceRoot":"","sources":["sequence-encoder.ts"],"names":[],"mappings":"AAEA;;;;;GAKG;AACH,qBAAa,sBAAsB;IAC/B,SAAS,CAAC,MAAM,EAAE;QAAC,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,CAAA;KAAC,CAAC;IAC3C,SAAS,CAAC,MAAM,EAAE;QAAC,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,CAAA;KAAC,CAAC;;IA8B3C;;;;;;;OAOG;IACH,MAAM,CAAC,iBAAiB,CAAC,GAAG,EAAE,MAAM,GAAG,MAAM;IAkB7C;;;;;;;OAOG;IACH,MAAM,CAAC,YAAY,CAAC,GAAG,EAAE,MAAM,GAAG,MAAM;IAIxC;;;;;;;OAOG;IACH,MAAM,CAAC,KAAK,CAAC,QAAQ,EAAE,MAAM,GAAG,MAAM;IAItC;;;;;;OAMG;IACI,MAAM,CAAC,QAAQ,EAAE,MAAM,GAAG,MAAM,EAAE;IAezC;;;;;;OAMG;IACI,MAAM,CAAC,KAAK,EAAE,MAAM,EAAE,GAAG,MAAM;CAYzC"}