@datagrok-libraries/utils 0.0.13 → 0.0.15

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
package/package.json CHANGED
@@ -1,29 +1,25 @@
1
1
  {
2
- "name": "@datagrok-libraries/utils",
3
- "publishConfig": {
4
- "access": "public"
5
- },
6
- "fullName": "Utils",
7
- "version": "0.0.13",
8
- "description": "Common utilities",
9
- "dependencies": {
10
- "@keckelt/tsne": "^1.0.2",
11
- "@types/node": "^14.14.37",
12
- "datagrok-api": ">=0.95.8",
13
- "dts-bundle": "^0.7.3",
14
- "fastest-levenshtein": "^1.0.12",
15
- "jaro-winkler-typescript": "^1.0.1",
16
- "umap-js": "^1.3.3",
17
- "js-yaml": "^4.1.0",
18
- "node-fetch": "^2.6.0"
19
- },
20
- "devDependencies": {
21
- "typescript": "^4.2.3",
22
- "ts-loader": "^9.2.6"
23
- },
24
- "scripts": {
25
- "link": "npm link",
26
- "link-api": "npm link datagrok-api",
27
- "build": "tsc"
28
- }
2
+ "name": "@datagrok-libraries/utils",
3
+ "publishConfig": {
4
+ "access": "public"
5
+ },
6
+ "fullName": "Utils",
7
+ "version": "0.0.15",
8
+ "description": "Common utilities",
9
+ "dependencies": {
10
+ "@types/node": "^14.14.37",
11
+ "datagrok-api": ">=0.95.8",
12
+ "dts-bundle": "^0.7.3",
13
+ "js-yaml": "^4.1.0",
14
+ "node-fetch": "^2.6.0"
15
+ },
16
+ "devDependencies": {
17
+ "typescript": "^4.2.3",
18
+ "ts-loader": "^9.2.6"
19
+ },
20
+ "scripts": {
21
+ "link": "npm link",
22
+ "link-api": "npm link datagrok-api",
23
+ "build": "tsc"
24
+ }
29
25
  }
@@ -63,6 +63,8 @@ export declare function calculateEuclideanDistance(p: Vector, q: Vector): number
63
63
  * @return {Matrix} Calculated custom distance matrix.
64
64
  */
65
65
  export declare function calcDistanceMatrix(data: Vectors, distance: DistanceMetric): Matrix;
66
+ /** Generates array from a range [begin; end]. */
67
+ export declare function genRange(begin: number, end: number): Int32Array;
66
68
  /**
67
69
  * Returns order of values as if they are sorted.
68
70
  *
@@ -1 +1 @@
1
- {"version":3,"file":"operations.d.ts","sourceRoot":"","sources":["operations.ts"],"names":[],"mappings":"AAAA,OAAO,EAAC,MAAM,EAAE,MAAM,EAAe,OAAO,EAAE,cAAc,EAAC,MAAM,qBAAqB,CAAC;AAEzF;;;;;;;GAOG;AACH,wBAAgB,MAAM,CAAC,SAAS,GAAE,OAAe,EAAE,OAAO,GAAE,MAA2B,QAItF;AAED;;;;;;GAMG;AACH,wBAAgB,SAAS,CAAC,KAAK,EAAE,MAAM,GAAG,MAAM,CAE/C;AAeD;;;;;;;GAOG;AACH,wBAAgB,eAAe,CAAC,MAAM,EAAE,MAAM,GAAG,MAAM,CAEtD;AAED;;;;;;;;GAQG;AACH,wBAAgB,SAAS,CAAC,CAAC,EAAE,MAAM,EAAE,CAAC,EAAE,MAAM,EAAE,UAAU,GAAE,MAAU,GAAG,MAAM,CAW9E;AAiCD;;;;;;;;GAQG;AACH,wBAAgB,gBAAgB,CAAC,UAAU,EAAE,MAAM,EAAE,UAAU,EAAE,MAAM,EAAE,KAAK,GAAE,MAAW,GAAG,MAAM,CASnG;AAED;;;;;;;GAOG;AACH,wBAAgB,0BAA0B,CAAC,CAAC,EAAE,MAAM,EAAE,CAAC,EAAE,MAAM,GAAG,MAAM,CAKvE;AAED;;;;;;;GAOG;AACH,wBAAgB,kBAAkB,CAAC,IAAI,EAAE,OAAO,EAAE,QAAQ,EAAE,cAAc,GAAG,MAAM,CAWlF;AAED;;;;;;;GAOG;AACH,wBAAgB,OAAO,CAAC,MAAM,EAAE,GAAG,EAAE,EAAE,OAAO,UAAQ,GAAG,MAAM,EAAE,CAMhE"}
1
+ {"version":3,"file":"operations.d.ts","sourceRoot":"","sources":["operations.ts"],"names":[],"mappings":"AAAA,OAAO,EAAC,MAAM,EAAE,MAAM,EAAe,OAAO,EAAE,cAAc,EAAC,MAAM,qBAAqB,CAAC;AAEzF;;;;;;;GAOG;AACH,wBAAgB,MAAM,CAAC,SAAS,GAAE,OAAe,EAAE,OAAO,GAAE,MAA2B,QAItF;AAED;;;;;;GAMG;AACH,wBAAgB,SAAS,CAAC,KAAK,EAAE,MAAM,GAAG,MAAM,CAE/C;AAeD;;;;;;;GAOG;AACH,wBAAgB,eAAe,CAAC,MAAM,EAAE,MAAM,GAAG,MAAM,CAEtD;AAED;;;;;;;;GAQG;AACH,wBAAgB,SAAS,CAAC,CAAC,EAAE,MAAM,EAAE,CAAC,EAAE,MAAM,EAAE,UAAU,GAAE,MAAU,GAAG,MAAM,CAW9E;AAiCD;;;;;;;;GAQG;AACH,wBAAgB,gBAAgB,CAAC,UAAU,EAAE,MAAM,EAAE,UAAU,EAAE,MAAM,EAAE,KAAK,GAAE,MAAW,GAAG,MAAM,CASnG;AAED;;;;;;;GAOG;AACH,wBAAgB,0BAA0B,CAAC,CAAC,EAAE,MAAM,EAAE,CAAC,EAAE,MAAM,GAAG,MAAM,CAKvE;AAED;;;;;;;GAOG;AACH,wBAAgB,kBAAkB,CAAC,IAAI,EAAE,OAAO,EAAE,QAAQ,EAAE,cAAc,GAAG,MAAM,CAWlF;AAED,iDAAiD;AACjD,wBAAgB,QAAQ,CAAC,KAAK,EAAE,MAAM,EAAE,GAAG,EAAE,MAAM,GAAG,UAAU,CAQ/D;AAED;;;;;;;GAOG;AACH,wBAAgB,OAAO,CAAC,MAAM,EAAE,GAAG,EAAE,EAAE,OAAO,UAAQ,GAAG,MAAM,EAAE,CAMhE"}
package/src/operations.js CHANGED
@@ -141,6 +141,15 @@ export function calcDistanceMatrix(data, distance) {
141
141
  }
142
142
  return matrix;
143
143
  }
144
+ /** Generates array from a range [begin; end]. */
145
+ export function genRange(begin, end) {
146
+ const nItems = end - begin;
147
+ const series = new Int32Array(nItems);
148
+ for (let i = 0; i < nItems + 1; ++i) {
149
+ series[i] = begin + i;
150
+ }
151
+ return series;
152
+ }
144
153
  /**
145
154
  * Returns order of values as if they are sorted.
146
155
  *
@@ -156,4 +165,4 @@ export function argSort(values, reverse = false) {
156
165
  const _argsort = (arr) => arr.map(decor).sort(sortfn).map(undecor);
157
166
  return _argsort(values);
158
167
  }
159
- //# sourceMappingURL=data:application/json;base64,{"version":3,"file":"operations.js","sourceRoot":"","sources":["operations.ts"],"names":[],"mappings":"AAAA,OAAO,EAAS,MAAM,EAAuC,MAAM,qBAAqB,CAAC;AAEzF;;;;;;;GAOG;AACH,MAAM,UAAU,MAAM,CAAC,YAAqB,KAAK,EAAE,UAAkB,kBAAkB;IACrF,IAAI,CAAC,SAAS,EAAE;QACd,MAAM,IAAI,KAAK,CAAC,OAAO,CAAC,CAAC;KAC1B;AACH,CAAC;AAED;;;;;;GAMG;AACH,MAAM,UAAU,SAAS,CAAC,KAAa;IACrC,OAAO,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,MAAM,EAAE,GAAG,KAAK,CAAC,CAAC;AAC3C,CAAC;AAED;;;;;;;;GAQG;AACH,SAAS,eAAe,CAAC,UAAkB,EAAE,UAAkB,EAAE,OAAe,CAAC;IAC/E,OAAO,IAAI,KAAK,CAAC,UAAU,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC,GAAG,CAAC,GAAG,EAAE,CAAC,CAAC,IAAI,MAAM,CAAC,UAAU,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;AACzF,CAAC;AAED;;;;;;;GAOG;AACH,MAAM,UAAU,eAAe,CAAC,MAAc;IAC5C,OAAO,IAAI,KAAK,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,IAAI,MAAM,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;AAC9H,CAAC;AAED;;;;;;;;GAQG;AACH,MAAM,UAAU,SAAS,CAAC,CAAS,EAAE,CAAS,EAAE,aAAqB,CAAC;IACpE,MAAM,MAAM,GAAG,CAAC,CAAC,MAAM,CAAC;IAExB,MAAM,CAAC,MAAM,IAAI,CAAC,CAAC,MAAM,EAAE,8BAA8B,CAAC,CAAA;IAE1D,IAAI,KAAK,GAAG,IAAI,MAAM,CAAC,MAAM,CAAC,CAAC;IAE/B,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,CAAC,MAAM,EAAE,EAAE,CAAC,EAAE;QACjC,KAAK,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,GAAC,UAAU,GAAC,CAAC,CAAC,CAAC,CAAC,CAAC;KACjC;IACD,OAAO,KAAK,CAAC;AACf,CAAC;AAED;;;;;GAKG;AACH,SAAS,QAAQ,CAAC,CAAS;IACzB,IAAI,KAAK,GAAG,CAAC,CAAC;IAEd,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,CAAC,MAAM,EAAE,EAAE,CAAC,EAAE;QACjC,KAAK,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC;KACf;IACD,OAAO,KAAK,CAAC;AACf,CAAC;AAED;;;;;GAKG;AACH,SAAS,YAAY,CAAC,CAAS;IAC7B,MAAM,MAAM,GAAG,CAAC,CAAC,MAAM,CAAC;IACxB,IAAI,KAAK,GAAG,IAAI,MAAM,CAAC,MAAM,CAAC,CAAC;IAE/B,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,CAAC,MAAM,EAAE,EAAE,CAAC,EAAE;QACjC,KAAK,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,GAAC,CAAC,CAAC,CAAC,CAAC,CAAC;KACtB;IACD,OAAO,KAAK,CAAC;AACf,CAAC;AAED;;;;;;;;GAQG;AACH,MAAM,UAAU,gBAAgB,CAAC,UAAkB,EAAE,UAAkB,EAAE,QAAgB,EAAE;IACzF,IAAI,MAAM,GAAG,eAAe,CAAC,UAAU,EAAE,UAAU,CAAC,CAAC;IAErD,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,UAAU,EAAE,EAAE,CAAC,EAAE;QACnC,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,UAAU,EAAE,EAAE,CAAC,EAAE;YACnC,MAAM,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,IAAI,CAAC,MAAM,EAAE,GAAG,KAAK,CAAC;SACtC;KACF;IACD,OAAO,MAAM,CAAC;AAChB,CAAC;AAED;;;;;;;GAOG;AACH,MAAM,UAAU,0BAA0B,CAAC,CAAS,EAAE,CAAS;IAC7D,MAAM,IAAI,GAAG,SAAS,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC;IACjC,MAAM,MAAM,GAAG,YAAY,CAAC,IAAI,CAAC,CAAC;IAClC,MAAM,UAAU,GAAG,QAAQ,CAAC,MAAM,CAAC,CAAC;IACpC,OAAO,IAAI,CAAC,IAAI,CAAC,UAAU,CAAC,CAAC;AAC/B,CAAC;AAED;;;;;;;GAOG;AACH,MAAM,UAAU,kBAAkB,CAAC,IAAa,EAAE,QAAwB;IACxE,MAAM,MAAM,GAAG,IAAI,CAAC,MAAM,CAAC;IAC3B,IAAI,MAAM,GAAG,eAAe,CAAC,MAAM,EAAE,MAAM,EAAE,CAAC,CAAC,CAAC;IAEhD,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,MAAM,EAAE,EAAE,CAAC,EAAE;QAC/B,KAAK,IAAI,CAAC,GAAG,CAAC,GAAC,CAAC,EAAE,CAAC,GAAG,MAAM,EAAE,EAAE,CAAC,EAAE;YACjC,MAAM,CAAC,GAAW,CAAC,IAAI,CAAC,CAAC,CAAC,IAAI,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC,IAAI,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC;YAC1F,MAAM,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,MAAM,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC;SACjC;KACF;IACD,OAAO,MAAM,CAAC;AAChB,CAAC;AAED;;;;;;;GAOG;AACH,MAAM,UAAU,OAAO,CAAC,MAAa,EAAE,OAAO,GAAG,KAAK;IACpD,MAAM,MAAM,GAAG,OAAO,CAAC,CAAC,CAAC,CAAC,CAAQ,EAAE,CAAQ,EAAE,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAQ,EAAE,CAAQ,EAAE,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;IACvG,MAAM,KAAK,GAAG,CAAC,CAAM,EAAE,CAAS,EAAE,EAAE,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,qBAAqB;IAClE,MAAM,OAAO,GAAG,CAAC,CAAQ,EAAE,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,mBAAmB;IACvD,MAAM,QAAQ,GAAG,CAAC,GAAU,EAAE,EAAE,CAAC,GAAG,CAAC,GAAG,CAAC,KAAK,CAAC,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC;IAC1E,OAAO,QAAQ,CAAC,MAAM,CAAC,CAAC;AAC1B,CAAC","sourcesContent":["import {Matrix, Vector, Coordinates, Vectors, DistanceMetric} from './type-declarations';\n\n/**\n * Asserts a condition by throwing an Error.\n *\n * @export\n * @param {boolean} [condition=false] Condition to assert.\n * @param {string} [message='Assertion error.'] Message to output.\n * @throws {Error}\n */\nexport function assert(condition: boolean = false, message: string = 'Assertion error.') {\n  if (!condition) {\n    throw new Error(message);\n  }\n}\n\n/**\n * Generates single random integer from 0 to range.\n *\n * @export\n * @param {number} range Max generating value.\n * @return {number} A random integer generated.\n */\nexport function randomInt(range: number): number {\n  return Math.floor(Math.random() * range);\n}\n\n/**\n * Creates new two-dimensional array and fills it with the value given.\n *\n * @param {number} dimension1 The first dimension of the coordinates (number of rows).\n * @param {number} dimension2 The second dimension of the coordinates (number of columns).\n * @param {number} [fill=0] A value to fill the coordinates with.\n * @return {Coordinates} A two-dimensional filled with the value given.\n * @todo Might be slow since used Array.map. Probably needs performance revision.\n */\nfunction initCoordinates(dimension1: number, dimension2: number, fill: number = 0): Coordinates {\n  return new Array(dimension1).fill(fill).map(() => (new Vector(dimension2).fill(fill)));\n}\n\n/**\n * Transpose matrix.\n *\n * @export\n * @param {Matrix} matrix The matrix to be transposed.\n * @return {Matrix} Transposed matrix.\n * @todo Might be slow since used Array.map. Probably needs performance revision.\n */\nexport function transposeMatrix(matrix: Matrix): Matrix {\n  return new Array(matrix[0].length).fill(0).map((_, i) => (new Vector(matrix.length).fill(0).map((_, j) => (matrix[j][i]))));\n}\n\n/**\n * Adds two vectors with the second one to be multiplied by the given ratio.\n *\n * @export\n * @param {Vector} p The first vector to add.\n * @param {Vector} q The second vector to add.\n * @param {number} [multiplier=1] A multiplier to be used before the second vector is added.\n * @return {Vector} New vector contained the result of operation p+multiplier*q.\n */\nexport function vectorAdd(p: Vector, q: Vector, multiplier: number = 1): Vector {\n  const nItems = p.length;\n\n  assert(nItems == q.length, 'Vector lengths do not match.')\n\n  let total = new Vector(nItems);\n\n  for (let i = 0; i < p.length; ++i) {\n    total[i] = p[i]+multiplier*q[i];\n  }\n  return total;\n}\n\n/**\n * Sums the vector's items.\n *\n * @param {Vector} v The vector to be summed.\n * @return {number} The vector's items sum.\n */\nfunction itemsSum(v: Vector): number {\n  let total = 0;\n\n  for (let i = 0; i < v.length; ++i) {\n    total += v[i];\n  }\n  return total;\n}\n\n/**\n * Suqares the vector's items.\n *\n * @param {Vector} v The vector to square.\n * @return {Vector} A new vector containing the original's items squared.\n */\nfunction vectorSquare(v: Vector): Vector {\n  const nItems = v.length;\n  let total = new Vector(nItems);\n\n  for (let i = 0; i < v.length; ++i) {\n    total[i] = v[i]*v[i];\n  }\n  return total;\n}\n\n/**\n * Creates a matrix filled with random floating point values.\n *\n * @export\n * @param {number} dimension1 The first dimension of the matrix.\n * @param {number} dimension2 The second dimension of the matrix.\n * @param {number} [scale=1.] Max value given by random generator.\n * @return {Matrix} A new matrix filled with random floating point  values.\n */\nexport function fillRandomMatrix(dimension1: number, dimension2: number, scale: number = 1.): Matrix {\n  let matrix = initCoordinates(dimension1, dimension2);\n\n  for (let i = 0; i < dimension1; ++i) {\n    for (let j = 0; j < dimension2; ++j) {\n      matrix[i][j] = Math.random() * scale;\n    }\n  }\n  return matrix;\n}\n\n/**\n * Calculates Euclidean distance between two vectors.\n *\n * @export\n * @param {Vector} p The first vector.\n * @param {Vector} q The second vector.\n * @return {number} Euclidean distance between the given vectors.\n */\nexport function calculateEuclideanDistance(p: Vector, q: Vector): number {\n  const diff = vectorAdd(p, q, -1);\n  const sqdiff = vectorSquare(diff);\n  const sqdiffSumm = itemsSum(sqdiff);\n  return Math.sqrt(sqdiffSumm);\n}\n\n/**\n * Creates a distance matrix using a custom distance function.\n *\n * @export\n * @param {Vectors} data Input vectors to calculate distances.\n * @param {DistanceMetric} distance Custom distance function.\n * @return {Matrix} Calculated custom distance matrix.\n */\nexport function calcDistanceMatrix(data: Vectors, distance: DistanceMetric): Matrix {\n  const nItems = data.length;\n  let matrix = initCoordinates(nItems, nItems, 0);\n\n  for (let i = 0; i < nItems; ++i) {\n    for (let j = i+1; j < nItems; ++j) {\n      const d: number = (data[i] == null) || (data[j] == null) ? 0 : distance(data[i], data[j]);\n      matrix[i][j] = matrix[j][i] = d;\n    }\n  }\n  return matrix;\n}\n\n/**\n * Returns order of values as if they are sorted.\n *\n * @export\n * @param {any[]} values Input array.\n * @param {boolean} [reverse=false] Whether to return reversed order.\n * @return {number[]} The order computed.\n */\nexport function argSort(values: any[], reverse = false): number[] {\n  const sortfn = reverse ? (a: any[], b: any[]) => (b[0] - a[0]) : (a: any[], b: any[]) => (a[0] - b[0]);\n  const decor = (v: any, i: number) => [v, i]; // set index to value\n  const undecor = (a: any[]) => a[1]; // leave only index\n  const _argsort = (arr: any[]) => arr.map(decor).sort(sortfn).map(undecor);\n  return _argsort(values);\n}\n"]}
168
+ //# sourceMappingURL=data:application/json;base64,{"version":3,"file":"operations.js","sourceRoot":"","sources":["operations.ts"],"names":[],"mappings":"AAAA,OAAO,EAAS,MAAM,EAAuC,MAAM,qBAAqB,CAAC;AAEzF;;;;;;;GAOG;AACH,MAAM,UAAU,MAAM,CAAC,YAAqB,KAAK,EAAE,UAAkB,kBAAkB;IACrF,IAAI,CAAC,SAAS,EAAE;QACd,MAAM,IAAI,KAAK,CAAC,OAAO,CAAC,CAAC;KAC1B;AACH,CAAC;AAED;;;;;;GAMG;AACH,MAAM,UAAU,SAAS,CAAC,KAAa;IACrC,OAAO,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,MAAM,EAAE,GAAG,KAAK,CAAC,CAAC;AAC3C,CAAC;AAED;;;;;;;;GAQG;AACH,SAAS,eAAe,CAAC,UAAkB,EAAE,UAAkB,EAAE,OAAe,CAAC;IAC/E,OAAO,IAAI,KAAK,CAAC,UAAU,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC,GAAG,CAAC,GAAG,EAAE,CAAC,CAAC,IAAI,MAAM,CAAC,UAAU,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;AACzF,CAAC;AAED;;;;;;;GAOG;AACH,MAAM,UAAU,eAAe,CAAC,MAAc;IAC5C,OAAO,IAAI,KAAK,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,IAAI,MAAM,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;AAC9H,CAAC;AAED;;;;;;;;GAQG;AACH,MAAM,UAAU,SAAS,CAAC,CAAS,EAAE,CAAS,EAAE,aAAqB,CAAC;IACpE,MAAM,MAAM,GAAG,CAAC,CAAC,MAAM,CAAC;IAExB,MAAM,CAAC,MAAM,IAAI,CAAC,CAAC,MAAM,EAAE,8BAA8B,CAAC,CAAA;IAE1D,IAAI,KAAK,GAAG,IAAI,MAAM,CAAC,MAAM,CAAC,CAAC;IAE/B,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,CAAC,MAAM,EAAE,EAAE,CAAC,EAAE;QACjC,KAAK,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,GAAC,UAAU,GAAC,CAAC,CAAC,CAAC,CAAC,CAAC;KACjC;IACD,OAAO,KAAK,CAAC;AACf,CAAC;AAED;;;;;GAKG;AACH,SAAS,QAAQ,CAAC,CAAS;IACzB,IAAI,KAAK,GAAG,CAAC,CAAC;IAEd,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,CAAC,MAAM,EAAE,EAAE,CAAC,EAAE;QACjC,KAAK,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC;KACf;IACD,OAAO,KAAK,CAAC;AACf,CAAC;AAED;;;;;GAKG;AACH,SAAS,YAAY,CAAC,CAAS;IAC7B,MAAM,MAAM,GAAG,CAAC,CAAC,MAAM,CAAC;IACxB,IAAI,KAAK,GAAG,IAAI,MAAM,CAAC,MAAM,CAAC,CAAC;IAE/B,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,CAAC,MAAM,EAAE,EAAE,CAAC,EAAE;QACjC,KAAK,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,GAAC,CAAC,CAAC,CAAC,CAAC,CAAC;KACtB;IACD,OAAO,KAAK,CAAC;AACf,CAAC;AAED;;;;;;;;GAQG;AACH,MAAM,UAAU,gBAAgB,CAAC,UAAkB,EAAE,UAAkB,EAAE,QAAgB,EAAE;IACzF,IAAI,MAAM,GAAG,eAAe,CAAC,UAAU,EAAE,UAAU,CAAC,CAAC;IAErD,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,UAAU,EAAE,EAAE,CAAC,EAAE;QACnC,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,UAAU,EAAE,EAAE,CAAC,EAAE;YACnC,MAAM,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,IAAI,CAAC,MAAM,EAAE,GAAG,KAAK,CAAC;SACtC;KACF;IACD,OAAO,MAAM,CAAC;AAChB,CAAC;AAED;;;;;;;GAOG;AACH,MAAM,UAAU,0BAA0B,CAAC,CAAS,EAAE,CAAS;IAC7D,MAAM,IAAI,GAAG,SAAS,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC;IACjC,MAAM,MAAM,GAAG,YAAY,CAAC,IAAI,CAAC,CAAC;IAClC,MAAM,UAAU,GAAG,QAAQ,CAAC,MAAM,CAAC,CAAC;IACpC,OAAO,IAAI,CAAC,IAAI,CAAC,UAAU,CAAC,CAAC;AAC/B,CAAC;AAED;;;;;;;GAOG;AACH,MAAM,UAAU,kBAAkB,CAAC,IAAa,EAAE,QAAwB;IACxE,MAAM,MAAM,GAAG,IAAI,CAAC,MAAM,CAAC;IAC3B,IAAI,MAAM,GAAG,eAAe,CAAC,MAAM,EAAE,MAAM,EAAE,CAAC,CAAC,CAAC;IAEhD,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,MAAM,EAAE,EAAE,CAAC,EAAE;QAC/B,KAAK,IAAI,CAAC,GAAG,CAAC,GAAC,CAAC,EAAE,CAAC,GAAG,MAAM,EAAE,EAAE,CAAC,EAAE;YACjC,MAAM,CAAC,GAAW,CAAC,IAAI,CAAC,CAAC,CAAC,IAAI,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC,IAAI,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC;YAC1F,MAAM,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,MAAM,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC;SACjC;KACF;IACD,OAAO,MAAM,CAAC;AAChB,CAAC;AAED,iDAAiD;AACjD,MAAM,UAAU,QAAQ,CAAC,KAAa,EAAE,GAAW;IACjD,MAAM,MAAM,GAAG,GAAG,GAAG,KAAK,CAAC;IAC3B,MAAM,MAAM,GAAG,IAAI,UAAU,CAAC,MAAM,CAAC,CAAC;IAEtC,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,MAAM,GAAG,CAAC,EAAE,EAAE,CAAC,EAAE;QACnC,MAAM,CAAC,CAAC,CAAC,GAAG,KAAK,GAAG,CAAC,CAAC;KACvB;IACD,OAAO,MAAM,CAAC;AAChB,CAAC;AAED;;;;;;;GAOG;AACH,MAAM,UAAU,OAAO,CAAC,MAAa,EAAE,OAAO,GAAG,KAAK;IACpD,MAAM,MAAM,GAAG,OAAO,CAAC,CAAC,CAAC,CAAC,CAAQ,EAAE,CAAQ,EAAE,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAQ,EAAE,CAAQ,EAAE,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;IACvG,MAAM,KAAK,GAAG,CAAC,CAAM,EAAE,CAAS,EAAE,EAAE,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,qBAAqB;IAClE,MAAM,OAAO,GAAG,CAAC,CAAQ,EAAE,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,mBAAmB;IACvD,MAAM,QAAQ,GAAG,CAAC,GAAU,EAAE,EAAE,CAAC,GAAG,CAAC,GAAG,CAAC,KAAK,CAAC,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC;IAC1E,OAAO,QAAQ,CAAC,MAAM,CAAC,CAAC;AAC1B,CAAC","sourcesContent":["import {Matrix, Vector, Coordinates, Vectors, DistanceMetric} from './type-declarations';\n\n/**\n * Asserts a condition by throwing an Error.\n *\n * @export\n * @param {boolean} [condition=false] Condition to assert.\n * @param {string} [message='Assertion error.'] Message to output.\n * @throws {Error}\n */\nexport function assert(condition: boolean = false, message: string = 'Assertion error.') {\n  if (!condition) {\n    throw new Error(message);\n  }\n}\n\n/**\n * Generates single random integer from 0 to range.\n *\n * @export\n * @param {number} range Max generating value.\n * @return {number} A random integer generated.\n */\nexport function randomInt(range: number): number {\n  return Math.floor(Math.random() * range);\n}\n\n/**\n * Creates new two-dimensional array and fills it with the value given.\n *\n * @param {number} dimension1 The first dimension of the coordinates (number of rows).\n * @param {number} dimension2 The second dimension of the coordinates (number of columns).\n * @param {number} [fill=0] A value to fill the coordinates with.\n * @return {Coordinates} A two-dimensional filled with the value given.\n * @todo Might be slow since used Array.map. Probably needs performance revision.\n */\nfunction initCoordinates(dimension1: number, dimension2: number, fill: number = 0): Coordinates {\n  return new Array(dimension1).fill(fill).map(() => (new Vector(dimension2).fill(fill)));\n}\n\n/**\n * Transpose matrix.\n *\n * @export\n * @param {Matrix} matrix The matrix to be transposed.\n * @return {Matrix} Transposed matrix.\n * @todo Might be slow since used Array.map. Probably needs performance revision.\n */\nexport function transposeMatrix(matrix: Matrix): Matrix {\n  return new Array(matrix[0].length).fill(0).map((_, i) => (new Vector(matrix.length).fill(0).map((_, j) => (matrix[j][i]))));\n}\n\n/**\n * Adds two vectors with the second one to be multiplied by the given ratio.\n *\n * @export\n * @param {Vector} p The first vector to add.\n * @param {Vector} q The second vector to add.\n * @param {number} [multiplier=1] A multiplier to be used before the second vector is added.\n * @return {Vector} New vector contained the result of operation p+multiplier*q.\n */\nexport function vectorAdd(p: Vector, q: Vector, multiplier: number = 1): Vector {\n  const nItems = p.length;\n\n  assert(nItems == q.length, 'Vector lengths do not match.')\n\n  let total = new Vector(nItems);\n\n  for (let i = 0; i < p.length; ++i) {\n    total[i] = p[i]+multiplier*q[i];\n  }\n  return total;\n}\n\n/**\n * Sums the vector's items.\n *\n * @param {Vector} v The vector to be summed.\n * @return {number} The vector's items sum.\n */\nfunction itemsSum(v: Vector): number {\n  let total = 0;\n\n  for (let i = 0; i < v.length; ++i) {\n    total += v[i];\n  }\n  return total;\n}\n\n/**\n * Suqares the vector's items.\n *\n * @param {Vector} v The vector to square.\n * @return {Vector} A new vector containing the original's items squared.\n */\nfunction vectorSquare(v: Vector): Vector {\n  const nItems = v.length;\n  let total = new Vector(nItems);\n\n  for (let i = 0; i < v.length; ++i) {\n    total[i] = v[i]*v[i];\n  }\n  return total;\n}\n\n/**\n * Creates a matrix filled with random floating point values.\n *\n * @export\n * @param {number} dimension1 The first dimension of the matrix.\n * @param {number} dimension2 The second dimension of the matrix.\n * @param {number} [scale=1.] Max value given by random generator.\n * @return {Matrix} A new matrix filled with random floating point  values.\n */\nexport function fillRandomMatrix(dimension1: number, dimension2: number, scale: number = 1.): Matrix {\n  let matrix = initCoordinates(dimension1, dimension2);\n\n  for (let i = 0; i < dimension1; ++i) {\n    for (let j = 0; j < dimension2; ++j) {\n      matrix[i][j] = Math.random() * scale;\n    }\n  }\n  return matrix;\n}\n\n/**\n * Calculates Euclidean distance between two vectors.\n *\n * @export\n * @param {Vector} p The first vector.\n * @param {Vector} q The second vector.\n * @return {number} Euclidean distance between the given vectors.\n */\nexport function calculateEuclideanDistance(p: Vector, q: Vector): number {\n  const diff = vectorAdd(p, q, -1);\n  const sqdiff = vectorSquare(diff);\n  const sqdiffSumm = itemsSum(sqdiff);\n  return Math.sqrt(sqdiffSumm);\n}\n\n/**\n * Creates a distance matrix using a custom distance function.\n *\n * @export\n * @param {Vectors} data Input vectors to calculate distances.\n * @param {DistanceMetric} distance Custom distance function.\n * @return {Matrix} Calculated custom distance matrix.\n */\nexport function calcDistanceMatrix(data: Vectors, distance: DistanceMetric): Matrix {\n  const nItems = data.length;\n  let matrix = initCoordinates(nItems, nItems, 0);\n\n  for (let i = 0; i < nItems; ++i) {\n    for (let j = i+1; j < nItems; ++j) {\n      const d: number = (data[i] == null) || (data[j] == null) ? 0 : distance(data[i], data[j]);\n      matrix[i][j] = matrix[j][i] = d;\n    }\n  }\n  return matrix;\n}\n\n/** Generates array from a range [begin; end]. */\nexport function genRange(begin: number, end: number): Int32Array {\n  const nItems = end - begin;\n  const series = new Int32Array(nItems);\n\n  for (let i = 0; i < nItems + 1; ++i) {\n    series[i] = begin + i;\n  }\n  return series;\n}\n\n/**  \n * Returns order of values as if they are sorted.\n *\n * @export\n * @param {any[]} values Input array.\n * @param {boolean} [reverse=false] Whether to return reversed order.\n * @return {number[]} The order computed.\n */\nexport function argSort(values: any[], reverse = false): number[] {\n  const sortfn = reverse ? (a: any[], b: any[]) => (b[0] - a[0]) : (a: any[], b: any[]) => (a[0] - b[0]);\n  const decor = (v: any, i: number) => [v, i]; // set index to value\n  const undecor = (a: any[]) => a[1]; // leave only index\n  const _argsort = (arr: any[]) => arr.map(decor).sort(sortfn).map(undecor);\n  return _argsort(values);\n}\n"]}
@@ -1,38 +0,0 @@
1
- import { Options, Coordinates } from './type-declarations';
2
- /**
3
- * Unified class implementing different dimensionality reduction methods.
4
- *
5
- * @export
6
- * @class DimensionalityReducer
7
- */
8
- export declare class DimensionalityReducer {
9
- private reducer;
10
- static methods: string[];
11
- private measurer;
12
- /**
13
- * Creates an instance of DimensionalityReducer.
14
- * @param {any[]} data Vectors to embed.
15
- * @param {string} method Embedding method to be applied
16
- * @param {string} metric Distance metric to be computed between each of the vectors.
17
- * @param {Options} [options] Options to pass to the implementing embedders.
18
- * @memberof DimensionalityReducer
19
- */
20
- constructor(data: any[], method: string, metric: string, options?: Options);
21
- /**
22
- * Embeds the data given into the two-dimensional space using the chosen method.
23
- *
24
- * @param {boolean} transpose Whether to transform coordinates to have columns-first orientation.
25
- * @throws {Error} If the embedding method was not found.
26
- * @return {Coordinates} Cartesian coordinate of this embedding.
27
- * @memberof DimensionalityReducer
28
- */
29
- transform(transpose?: boolean): Coordinates;
30
- /**
31
- * Returns dimensionality reduction methods available.
32
- *
33
- * @readonly
34
- * @memberof DimensionalityReducer
35
- */
36
- static get availableMethods(): string[];
37
- }
38
- //# sourceMappingURL=reduce-dimensionality.d.ts.map
@@ -1 +0,0 @@
1
- {"version":3,"file":"reduce-dimensionality.d.ts","sourceRoot":"","sources":["reduce-dimensionality.ts"],"names":[],"mappings":"AAGA,OAAO,EAAC,OAAO,EAAkB,WAAW,EAA0B,MAAM,qBAAqB,CAAC;AAuMlG;;;;;GAKG;AACH,qBAAa,qBAAqB;IAChC,OAAO,CAAC,OAAO,CAAsB;IACrC,OAAc,OAAO,EAAE,MAAM,EAAE,CAAoC;IACnE,OAAO,CAAC,QAAQ,CAAW;IAE3B;;;;;;;OAOG;gBACS,IAAI,EAAE,GAAG,EAAE,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,OAAO;IA2B1E;;;;;;;OAOG;IACI,SAAS,CAAC,SAAS,GAAE,OAAe,GAAG,WAAW;IAYzD;;;;;OAKG;IACH,MAAM,KAAK,gBAAgB,aAE1B;CACF"}
@@ -1,233 +0,0 @@
1
- import * as umj from 'umap-js';
2
- import { TSNE } from '@keckelt/tsne';
3
- import { Vector } from './type-declarations';
4
- import { calcDistanceMatrix, transposeMatrix } from './operations';
5
- import { SPEBase, PSPEBase } from './spe';
6
- import { Measurer } from './string-measure';
7
- import { AlignedSequenceEncoder } from './sequence-encoder';
8
- import { assert } from './operations';
9
- /**
10
- * Abstract dimensionality reducer.
11
- *
12
- * @abstract
13
- * @class Reducer
14
- */
15
- class Reducer {
16
- /**
17
- * Creates an instance of Reducer.
18
- * @param {Options} options Options to pass to the constructor.
19
- * @memberof Reducer
20
- */
21
- constructor(options) {
22
- this.data = options.data;
23
- }
24
- }
25
- /**
26
- * Implements t-SNE dimensionality reduction.
27
- *
28
- * @class TSNEReducer
29
- * @extends {Reducer}
30
- */
31
- class TSNEReducer extends Reducer {
32
- /**
33
- * Creates an instance of TSNEReducer.
34
- * @param {Options} options Options to pass to the constructor.
35
- * @memberof TSNEReducer
36
- */
37
- constructor(options) {
38
- var _a;
39
- super(options);
40
- this.reducer = new TSNE(options);
41
- this.iterations = (_a = options === null || options === void 0 ? void 0 : options.iterations) !== null && _a !== void 0 ? _a : 100;
42
- this.distance = options.distance;
43
- }
44
- /**
45
- * Embeds the data given into the two-dimensional space using t-SNE method.
46
- * @return {Coordinates} Cartesian coordinate of this embedding.
47
- */
48
- transform() {
49
- this.reducer.initDataDist(calcDistanceMatrix(this.data, this.distance));
50
- for (let i = 0; i < this.iterations; ++i) {
51
- this.reducer.step(); // every time you call this, solution gets better
52
- }
53
- return this.reducer.getSolution();
54
- }
55
- }
56
- /**
57
- * Implements UMAP dimensionality reduction.
58
- *
59
- * @class UMAPReducer
60
- * @extends {Reducer}
61
- */
62
- class UMAPReducer extends Reducer {
63
- /**
64
- * Creates an instance of UMAPReducer.
65
- * @param {Options} options Options to pass to the constructor.
66
- * @memberof UMAPReducer
67
- */
68
- constructor(options) {
69
- super(options);
70
- assert('distanceFn' in options);
71
- this.encoder = new AlignedSequenceEncoder();
72
- this.distanceFn = options.distanceFn;
73
- this.vectors = [];
74
- options.distanceFn = this._encodedDistance.bind(this);
75
- this.reducer = new umj.UMAP(options);
76
- }
77
- /**
78
- * Custom distance wrapper to have numeric inputs instead of string ones.
79
- *
80
- * @protected
81
- * @param {number[]} a The first item.
82
- * @param {number[]} b The first item.
83
- * @return {number} Distance metric.
84
- * @memberof UMAPReducer
85
- */
86
- _encodedDistance(a, b) {
87
- return this.distanceFn(this.data[a[0]], this.data[b[0]]);
88
- }
89
- /**
90
- * Encodes the input data as a vector of indices.
91
- *
92
- * @protected
93
- * @memberof UMAPReducer
94
- */
95
- _encode() {
96
- for (let i = 0; i < this.data.length; ++i) {
97
- this.vectors.push([i]);
98
- }
99
- }
100
- /**
101
- * Embeds the data given into the two-dimensional space using UMAP method.
102
- * @return {Coordinates} Cartesian coordinate of this embedding.
103
- */
104
- transform() {
105
- this._encode();
106
- const embedding = this.reducer.fit(this.vectors);
107
- function arrayCast2Coordinates(data) {
108
- return new Array(data.length).fill(0).map((_, i) => (Vector.from(data[i])));
109
- }
110
- return arrayCast2Coordinates(embedding);
111
- }
112
- }
113
- /**
114
- * Implements original SPE dimensionality reduction.
115
- *
116
- * @class SPEReducer
117
- * @extends {Reducer}
118
- */
119
- class SPEReducer extends Reducer {
120
- /**
121
- * Creates an instance of SPEReducer.
122
- * @param {Options} options Options to pass to the constructor.
123
- * @memberof SPEReducer
124
- */
125
- constructor(options) {
126
- super(options);
127
- this.reducer = new SPEBase(options);
128
- }
129
- /**
130
- * Embeds the data given into the two-dimensional space using the original SPE method.
131
- * @return {Coordinates} Cartesian coordinate of this embedding.
132
- */
133
- transform() {
134
- return this.reducer.embed(this.data);
135
- }
136
- }
137
- /**
138
- * Implements modified SPE dimensionality reduction.
139
- *
140
- * @class PSPEReducer
141
- * @extends {Reducer}
142
- */
143
- class PSPEReducer extends Reducer {
144
- /**
145
- * Creates an instance of PSPEReducer.
146
- * @param {Options} options Options to pass to the constructor.
147
- * @memberof PSPEReducer
148
- */
149
- constructor(options) {
150
- super(options);
151
- this.reducer = new PSPEBase(options);
152
- }
153
- /**
154
- * Embeds the data given into the two-dimensional space using the modified SPE method.
155
- * @return {Coordinates} Cartesian coordinate of this embedding.
156
- */
157
- transform() {
158
- return this.reducer.embed(this.data);
159
- }
160
- }
161
- /**
162
- * Unified class implementing different dimensionality reduction methods.
163
- *
164
- * @export
165
- * @class DimensionalityReducer
166
- */
167
- export class DimensionalityReducer {
168
- /**
169
- * Creates an instance of DimensionalityReducer.
170
- * @param {any[]} data Vectors to embed.
171
- * @param {string} method Embedding method to be applied
172
- * @param {string} metric Distance metric to be computed between each of the vectors.
173
- * @param {Options} [options] Options to pass to the implementing embedders.
174
- * @memberof DimensionalityReducer
175
- */
176
- constructor(data, method, metric, options) {
177
- var _a;
178
- assert(DimensionalityReducer.availableMethods.includes(method), `The method '${method}' is not supported`);
179
- this.measurer = new Measurer(metric);
180
- const measure = this.measurer.getMeasure();
181
- if (method == 'UMAP') {
182
- this.reducer = new UMAPReducer({
183
- ...{ data: data },
184
- ...{ distanceFn: measure },
185
- ...{ nEpochs: options === null || options === void 0 ? void 0 : options.cycles },
186
- ...options
187
- });
188
- }
189
- else if (method == 't-SNE') {
190
- this.reducer = new TSNEReducer({
191
- ...{ data: data },
192
- ...{ distance: measure },
193
- ...{ iterations: (_a = options === null || options === void 0 ? void 0 : options.cycles) !== null && _a !== void 0 ? _a : undefined },
194
- ...options,
195
- });
196
- }
197
- else if (method == 'SPE') {
198
- this.reducer = new SPEReducer({ ...{ data: data }, ...{ distance: measure }, ...options });
199
- }
200
- else {
201
- this.reducer = new PSPEReducer({ ...{ data: data }, ...{ distance: measure }, ...options });
202
- }
203
- }
204
- /**
205
- * Embeds the data given into the two-dimensional space using the chosen method.
206
- *
207
- * @param {boolean} transpose Whether to transform coordinates to have columns-first orientation.
208
- * @throws {Error} If the embedding method was not found.
209
- * @return {Coordinates} Cartesian coordinate of this embedding.
210
- * @memberof DimensionalityReducer
211
- */
212
- transform(transpose = false) {
213
- if (this.reducer == undefined) {
214
- throw new Error('Reducer was not defined.');
215
- }
216
- let embedding = this.reducer.transform();
217
- if (transpose) {
218
- embedding = transposeMatrix(embedding);
219
- }
220
- return embedding;
221
- }
222
- /**
223
- * Returns dimensionality reduction methods available.
224
- *
225
- * @readonly
226
- * @memberof DimensionalityReducer
227
- */
228
- static get availableMethods() {
229
- return DimensionalityReducer.methods;
230
- }
231
- }
232
- DimensionalityReducer.methods = ['UMAP', 't-SNE', 'SPE', 'pSPE'];
233
- //# sourceMappingURL=data:application/json;base64,{"version":3,"file":"reduce-dimensionality.js","sourceRoot":"","sources":["reduce-dimensionality.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,GAAG,MAAM,SAAS,CAAC;AAC/B,OAAO,EAAC,IAAI,EAAC,MAAM,eAAe,CAAC;AAEnC,OAAO,EAAuC,MAAM,EAAkB,MAAM,qBAAqB,CAAC;AAClG,OAAO,EAAC,kBAAkB,EAAE,eAAe,EAAC,MAAM,cAAc,CAAC;AACjE,OAAO,EAAC,OAAO,EAAE,QAAQ,EAAC,MAAM,OAAO,CAAC;AACxC,OAAO,EAAC,QAAQ,EAAC,MAAM,kBAAkB,CAAC;AAC1C,OAAO,EAAC,sBAAsB,EAAC,MAAM,oBAAoB,CAAC;AAC1D,OAAO,EAAC,MAAM,EAAC,MAAM,cAAc,CAAC;AAEpC;;;;;GAKG;AACH,MAAe,OAAO;IAGpB;;;;OAIG;IACH,YAAY,OAAgB;QAC1B,IAAI,CAAC,IAAI,GAAG,OAAO,CAAC,IAAI,CAAC;IAC3B,CAAC;CAUF;AAED;;;;;GAKG;AACH,MAAM,WAAY,SAAQ,OAAO;IAK/B;;;;OAIG;IACH,YAAY,OAAgB;;QAC1B,KAAK,CAAC,OAAO,CAAC,CAAC;QACf,IAAI,CAAC,OAAO,GAAG,IAAI,IAAI,CAAC,OAAO,CAAC,CAAC;QACjC,IAAI,CAAC,UAAU,GAAG,MAAA,OAAO,aAAP,OAAO,uBAAP,OAAO,CAAE,UAAU,mCAAI,GAAG,CAAC;QAC7C,IAAI,CAAC,QAAQ,GAAG,OAAO,CAAC,QAAQ,CAAC;IACnC,CAAC;IAED;;;OAGG;IACI,SAAS;QACd,IAAI,CAAC,OAAO,CAAC,YAAY,CAAC,kBAAkB,CAAC,IAAI,CAAC,IAAI,EAAE,IAAI,CAAC,QAAQ,CAAC,CAAC,CAAC;QAExE,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,IAAI,CAAC,UAAU,EAAE,EAAE,CAAC,EAAE;YACxC,IAAI,CAAC,OAAO,CAAC,IAAI,EAAE,CAAC,CAAC,iDAAiD;SACvE;QACD,OAAO,IAAI,CAAC,OAAO,CAAC,WAAW,EAAE,CAAC;IACpC,CAAC;CACF;AAED;;;;;GAKG;AACH,MAAM,WAAY,SAAQ,OAAO;IAM/B;;;;OAIG;IACH,YAAY,OAAgB;QAC1B,KAAK,CAAC,OAAO,CAAC,CAAC;QAEf,MAAM,CAAC,YAAY,IAAI,OAAO,CAAC,CAAC;QAEhC,IAAI,CAAC,OAAO,GAAG,IAAI,sBAAsB,EAAE,CAAC;QAC5C,IAAI,CAAC,UAAU,GAAG,OAAO,CAAC,UAAU,CAAC;QACrC,IAAI,CAAC,OAAO,GAAG,EAAE,CAAC;QAClB,OAAO,CAAC,UAAU,GAAG,IAAI,CAAC,gBAAgB,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;QACtD,IAAI,CAAC,OAAO,GAAG,IAAI,GAAG,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC;IACvC,CAAC;IAED;;;;;;;;OAQG;IACO,gBAAgB,CAAC,CAAW,EAAE,CAAW;QACjD,OAAO,IAAI,CAAC,UAAU,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,EAAE,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;IAC3D,CAAC;IAED;;;;;OAKG;IACO,OAAO;QACf,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,IAAI,CAAC,IAAI,CAAC,MAAM,EAAE,EAAE,CAAC,EAAE;YACzC,IAAI,CAAC,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;SACxB;IACH,CAAC;IAED;;;OAGG;IACI,SAAS;QACd,IAAI,CAAC,OAAO,EAAE,CAAC;QAEf,MAAM,SAAS,GAAG,IAAI,CAAC,OAAO,CAAC,GAAG,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC;QAEjD,SAAS,qBAAqB,CAAC,IAAgB;YAC7C,OAAO,IAAI,KAAK,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,MAAM,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;QAC9E,CAAC;QAED,OAAO,qBAAqB,CAAC,SAAS,CAAC,CAAC;IAC1C,CAAC;CACF;AAED;;;;;GAKG;AACH,MAAM,UAAW,SAAQ,OAAO;IAG9B;;;;OAIG;IACH,YAAY,OAAgB;QAC1B,KAAK,CAAC,OAAO,CAAC,CAAC;QACf,IAAI,CAAC,OAAO,GAAG,IAAI,OAAO,CAAC,OAAO,CAAC,CAAC;IACtC,CAAC;IAED;;;OAGG;IACI,SAAS;QACd,OAAO,IAAI,CAAC,OAAO,CAAC,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;IACvC,CAAC;CACF;AAED;;;;;GAKG;AACH,MAAM,WAAY,SAAQ,OAAO;IAG/B;;;;OAIG;IACH,YAAY,OAAgB;QAC1B,KAAK,CAAC,OAAO,CAAC,CAAC;QACf,IAAI,CAAC,OAAO,GAAG,IAAI,QAAQ,CAAC,OAAO,CAAC,CAAC;IACvC,CAAC;IAED;;;OAGG;IACI,SAAS;QACd,OAAO,IAAI,CAAC,OAAO,CAAC,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;IACvC,CAAC;CACF;AAED;;;;;GAKG;AACH,MAAM,OAAO,qBAAqB;IAKhC;;;;;;;OAOG;IACH,YAAY,IAAW,EAAE,MAAc,EAAE,MAAc,EAAE,OAAiB;;QACxE,MAAM,CAAC,qBAAqB,CAAC,gBAAgB,CAAC,QAAQ,CAAC,MAAM,CAAC,EAAE,eAAe,MAAM,oBAAoB,CAAC,CAAC;QAE3G,IAAI,CAAC,QAAQ,GAAG,IAAI,QAAQ,CAAC,MAAM,CAAC,CAAC;QACrC,MAAM,OAAO,GAAG,IAAI,CAAC,QAAQ,CAAC,UAAU,EAAE,CAAA;QAE1C,IAAI,MAAM,IAAI,MAAM,EAAE;YACpB,IAAI,CAAC,OAAO,GAAG,IAAI,WAAW,CAAC;gBAC7B,GAAG,EAAC,IAAI,EAAE,IAAI,EAAC;gBACf,GAAG,EAAC,UAAU,EAAE,OAAO,EAAC;gBACxB,GAAG,EAAC,OAAO,EAAE,OAAO,aAAP,OAAO,uBAAP,OAAO,CAAE,MAAM,EAAC;gBAC7B,GAAG,OAAO;aACX,CAAC,CAAC;SACJ;aAAM,IAAI,MAAM,IAAI,OAAO,EAAE;YAC5B,IAAI,CAAC,OAAO,GAAG,IAAI,WAAW,CAAC;gBAC7B,GAAG,EAAC,IAAI,EAAE,IAAI,EAAC;gBACf,GAAG,EAAC,QAAQ,EAAE,OAAO,EAAC;gBACtB,GAAG,EAAC,UAAU,EAAE,MAAA,OAAO,aAAP,OAAO,uBAAP,OAAO,CAAE,MAAM,mCAAI,SAAS,EAAC;gBAC7C,GAAG,OAAO;aACX,CAAC,CAAC;SACJ;aAAM,IAAI,MAAM,IAAI,KAAK,EAAE;YAC1B,IAAI,CAAC,OAAO,GAAG,IAAI,UAAU,CAAC,EAAC,GAAG,EAAC,IAAI,EAAE,IAAI,EAAC,EAAE,GAAG,EAAC,QAAQ,EAAE,OAAO,EAAC,EAAE,GAAG,OAAO,EAAC,CAAC,CAAC;SACtF;aAAM;YACL,IAAI,CAAC,OAAO,GAAG,IAAI,WAAW,CAAC,EAAC,GAAG,EAAC,IAAI,EAAE,IAAI,EAAC,EAAE,GAAG,EAAC,QAAQ,EAAE,OAAO,EAAC,EAAE,GAAG,OAAO,EAAC,CAAC,CAAC;SACvF;IACH,CAAC;IAED;;;;;;;OAOG;IACI,SAAS,CAAC,YAAqB,KAAK;QACzC,IAAI,IAAI,CAAC,OAAO,IAAI,SAAS,EAAE;YAC7B,MAAM,IAAI,KAAK,CAAC,0BAA0B,CAAC,CAAC;SAC7C;QACD,IAAI,SAAS,GAAG,IAAI,CAAC,OAAO,CAAC,SAAS,EAAE,CAAC;QAEzC,IAAI,SAAS,EAAE;YACb,SAAS,GAAG,eAAe,CAAC,SAAS,CAAC,CAAC;SACxC;QACD,OAAO,SAAS,CAAC;IACnB,CAAC;IAED;;;;;OAKG;IACH,MAAM,KAAK,gBAAgB;QACzB,OAAO,qBAAqB,CAAC,OAAO,CAAC;IACvC,CAAC;;AAlEa,6BAAO,GAAa,CAAC,MAAM,EAAE,OAAO,EAAE,KAAK,EAAE,MAAM,CAAC,CAAC","sourcesContent":["import * as umj from 'umap-js';\nimport {TSNE} from '@keckelt/tsne';\n\nimport {Options, DistanceMetric, Coordinates, Vector, Vectors, Matrix} from './type-declarations';\nimport {calcDistanceMatrix, transposeMatrix} from './operations';\nimport {SPEBase, PSPEBase} from './spe';\nimport {Measurer} from './string-measure';\nimport {AlignedSequenceEncoder} from './sequence-encoder';\nimport {assert} from './operations';\n\n/**\n * Abstract dimensionality reducer.\n *\n * @abstract\n * @class Reducer\n */\nabstract class Reducer {\n  protected data: Vectors;\n\n  /**\n   * Creates an instance of Reducer.\n   * @param {Options} options Options to pass to the constructor.\n   * @memberof Reducer\n   */\n  constructor(options: Options) {\n    this.data = options.data;\n  }\n\n  /**\n   * Is to embed the data given into the two-dimensional space.\n   *\n   * @abstract\n   * @return {Coordinates} Cartesian coordinate of this embedding.\n   * @memberof Reducer\n   */\n  abstract transform(): Coordinates;\n}\n\n/**\n * Implements t-SNE dimensionality reduction.\n *\n * @class TSNEReducer\n * @extends {Reducer}\n */\nclass TSNEReducer extends Reducer {\n  protected reducer: TSNE;\n  protected iterations: number;\n  protected distance: DistanceMetric;\n\n  /**\n   * Creates an instance of TSNEReducer.\n   * @param {Options} options Options to pass to the constructor.\n   * @memberof TSNEReducer\n   */\n  constructor(options: Options) {\n    super(options);\n    this.reducer = new TSNE(options);\n    this.iterations = options?.iterations ?? 100;\n    this.distance = options.distance;\n  }\n\n  /**\n   * Embeds the data given into the two-dimensional space using t-SNE method.\n   * @return {Coordinates} Cartesian coordinate of this embedding.\n   */\n  public transform(): Coordinates {\n    this.reducer.initDataDist(calcDistanceMatrix(this.data, this.distance));\n\n    for (let i = 0; i < this.iterations; ++i) {\n      this.reducer.step(); // every time you call this, solution gets better\n    }\n    return this.reducer.getSolution();\n  }\n}\n\n/**\n * Implements UMAP dimensionality reduction.\n *\n * @class UMAPReducer\n * @extends {Reducer}\n */\nclass UMAPReducer extends Reducer {\n  protected reducer: umj.UMAP;\n  protected encoder: AlignedSequenceEncoder;\n  protected distanceFn: Function;\n  protected vectors: number[][];\n\n  /**\n   * Creates an instance of UMAPReducer.\n   * @param {Options} options Options to pass to the constructor.\n   * @memberof UMAPReducer\n   */\n  constructor(options: Options) {\n    super(options);\n\n    assert('distanceFn' in options);\n\n    this.encoder = new AlignedSequenceEncoder();\n    this.distanceFn = options.distanceFn;\n    this.vectors = [];\n    options.distanceFn = this._encodedDistance.bind(this);\n    this.reducer = new umj.UMAP(options);\n  }\n\n  /**\n   * Custom distance wrapper to have numeric inputs instead of string ones.\n   *\n   * @protected\n   * @param {number[]} a The first item.\n   * @param {number[]} b The first item.\n   * @return {number} Distance metric.\n   * @memberof UMAPReducer\n   */\n  protected _encodedDistance(a: number[], b: number[]): number {\n    return this.distanceFn(this.data[a[0]], this.data[b[0]]);\n  }\n\n  /**\n   * Encodes the input data as a vector of indices.\n   *\n   * @protected\n   * @memberof UMAPReducer\n   */\n  protected _encode() {\n    for (let i = 0; i < this.data.length; ++i) {\n      this.vectors.push([i]);\n    }\n  }\n\n  /**\n   * Embeds the data given into the two-dimensional space using UMAP method.\n   * @return {Coordinates} Cartesian coordinate of this embedding.\n   */\n  public transform(): Coordinates {\n    this._encode();\n\n    const embedding = this.reducer.fit(this.vectors);\n\n    function arrayCast2Coordinates(data: number[][]): Coordinates {\n      return new Array(data.length).fill(0).map((_, i) => (Vector.from(data[i])));\n    }\n\n    return arrayCast2Coordinates(embedding);\n  }\n}\n\n/**\n * Implements original SPE dimensionality reduction.\n *\n * @class SPEReducer\n * @extends {Reducer}\n */\nclass SPEReducer extends Reducer {\n  protected reducer: SPEBase;\n\n  /**\n   * Creates an instance of SPEReducer.\n   * @param {Options} options Options to pass to the constructor.\n   * @memberof SPEReducer\n   */\n  constructor(options: Options) {\n    super(options);\n    this.reducer = new SPEBase(options);\n  }\n\n  /**\n   * Embeds the data given into the two-dimensional space using the original SPE method.\n   * @return {Coordinates} Cartesian coordinate of this embedding.\n   */\n  public transform(): Coordinates {\n    return this.reducer.embed(this.data);\n  }\n}\n\n/**\n * Implements modified SPE dimensionality reduction.\n *\n * @class PSPEReducer\n * @extends {Reducer}\n */\nclass PSPEReducer extends Reducer {\n  protected reducer: PSPEBase;\n\n  /**\n   * Creates an instance of PSPEReducer.\n   * @param {Options} options Options to pass to the constructor.\n   * @memberof PSPEReducer\n   */\n  constructor(options: Options) {\n    super(options);\n    this.reducer = new PSPEBase(options);\n  }\n\n  /**\n   * Embeds the data given into the two-dimensional space using the modified SPE method.\n   * @return {Coordinates} Cartesian coordinate of this embedding.\n   */\n  public transform(): Coordinates {\n    return this.reducer.embed(this.data);\n  }\n}\n\n/**\n * Unified class implementing different dimensionality reduction methods.\n *\n * @export\n * @class DimensionalityReducer\n */\nexport class DimensionalityReducer {\n  private reducer: Reducer | undefined;\n  public static methods: string[] = ['UMAP', 't-SNE', 'SPE', 'pSPE'];\n  private measurer: Measurer;\n\n  /**\n   * Creates an instance of DimensionalityReducer.\n   * @param {any[]} data Vectors to embed.\n   * @param {string} method Embedding method to be applied\n   * @param {string} metric Distance metric to be computed between each of the vectors.\n   * @param {Options} [options] Options to pass to the implementing embedders.\n   * @memberof DimensionalityReducer\n   */\n  constructor(data: any[], method: string, metric: string, options?: Options) {\n    assert(DimensionalityReducer.availableMethods.includes(method), `The method '${method}' is not supported`);\n\n    this.measurer = new Measurer(metric);\n    const measure = this.measurer.getMeasure()\n\n    if (method == 'UMAP') {\n      this.reducer = new UMAPReducer({\n        ...{data: data}, \n        ...{distanceFn: measure}, \n        ...{nEpochs: options?.cycles},\n        ...options\n      });\n    } else if (method == 't-SNE') {\n      this.reducer = new TSNEReducer({\n        ...{data: data},\n        ...{distance: measure},\n        ...{iterations: options?.cycles ?? undefined},\n        ...options,\n      });\n    } else if (method == 'SPE') {\n      this.reducer = new SPEReducer({...{data: data}, ...{distance: measure}, ...options});\n    } else {\n      this.reducer = new PSPEReducer({...{data: data}, ...{distance: measure}, ...options});\n    }\n  }\n\n  /**\n   * Embeds the data given into the two-dimensional space using the chosen method.\n   *\n   * @param {boolean} transpose Whether to transform coordinates to have columns-first orientation.\n   * @throws {Error} If the embedding method was not found.\n   * @return {Coordinates} Cartesian coordinate of this embedding.\n   * @memberof DimensionalityReducer\n   */\n  public transform(transpose: boolean = false): Coordinates {\n    if (this.reducer == undefined) {\n      throw new Error('Reducer was not defined.');\n    }\n    let embedding = this.reducer.transform();\n\n    if (transpose) {\n      embedding = transposeMatrix(embedding);\n    }\n    return embedding;\n  }\n\n  /**\n   * Returns dimensionality reduction methods available.\n   *\n   * @readonly\n   * @memberof DimensionalityReducer\n   */\n  static get availableMethods() {\n    return DimensionalityReducer.methods;\n  }\n}\n"]}
@@ -1,62 +0,0 @@
1
- declare type SideChainScale = {
2
- [name: string]: number;
3
- };
4
- /**
5
- * Class to categorial encode/decode aligned amino acid residues sequence.
6
- *
7
- * @export
8
- * @class AlignedSequenceEncoder
9
- */
10
- export declare class AlignedSequenceEncoder {
11
- protected aa2num: SideChainScale;
12
- protected num2aa: {
13
- [code: number]: string;
14
- };
15
- constructor(scale?: string);
16
- /**
17
- * Truncate NH2 and -COOH terminals of the given sequence.
18
- *
19
- * @static
20
- * @param {string} seq The sequence provided.
21
- * @return {string} Truncated sequence.
22
- * @memberof AlignedSequenceEncoder
23
- */
24
- static _truncateSequence(seq: string): string;
25
- /**
26
- * Cuts auxiliary defises before a residue.
27
- *
28
- * @static
29
- * @param {string} seq The sequence to process.
30
- * @return {string} Processed sequence.
31
- * @memberof AlignedSequenceEncoder
32
- */
33
- static _dropDefises(seq: string): string;
34
- /**
35
- * Performs truncation and cutting auxiliary defises.
36
- *
37
- * @static
38
- * @param {string} sequence The sequence work under process.
39
- * @return {string} Result of cleaning.
40
- * @memberof AlignedSequenceEncoder
41
- */
42
- static clean(sequence: string): string;
43
- /**
44
- * Categorial encode of the sequence provided.
45
- *
46
- * @param {string} sequence The sequence.
47
- * @return {number[]} Encoded vector.
48
- * @memberof AlignedSequenceEncoder
49
- */
50
- encode(sequence: string): number[];
51
- encodeLettter(letter: string): number;
52
- /**
53
- * Decode the encoded vector into the sequence back.
54
- *
55
- * @param {number[]} value The vector encoded.
56
- * @return {string} Decoded sequence.
57
- * @memberof AlignedSequenceEncoder
58
- */
59
- decode(value: number[]): string;
60
- }
61
- export {};
62
- //# sourceMappingURL=sequence-encoder.d.ts.map
@@ -1 +0,0 @@
1
- {"version":3,"file":"sequence-encoder.d.ts","sourceRoot":"","sources":["sequence-encoder.ts"],"names":[],"mappings":"AAEA,aAAK,cAAc,GAAG;IAAC,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,CAAA;CAAC,CAAC;AAgE/C;;;;;GAKG;AACH,qBAAa,sBAAsB;IAC/B,SAAS,CAAC,MAAM,EAAE,cAAc,CAAC;IACjC,SAAS,CAAC,MAAM,EAAE;QAAC,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,CAAA;KAAC,CAAC;gBAE9B,KAAK,GAAE,MAAqB;IAMzC;;;;;;;OAOG;IACH,MAAM,CAAC,iBAAiB,CAAC,GAAG,EAAE,MAAM,GAAG,MAAM;IAkB7C;;;;;;;OAOG;IACH,MAAM,CAAC,YAAY,CAAC,GAAG,EAAE,MAAM,GAAG,MAAM;IAIxC;;;;;;;OAOG;IACH,MAAM,CAAC,KAAK,CAAC,QAAQ,EAAE,MAAM,GAAG,MAAM;IAItC;;;;;;OAMG;IACI,MAAM,CAAC,QAAQ,EAAE,MAAM,GAAG,MAAM,EAAE;IAclC,aAAa,CAAC,MAAM,EAAE,MAAM,GAAG,MAAM;IAI5C;;;;;;OAMG;IACI,MAAM,CAAC,KAAK,EAAE,MAAM,EAAE,GAAG,MAAM;CAYzC"}
@@ -1,155 +0,0 @@
1
- import { assert } from './operations';
2
- class SideChainScales {
3
- static getAvailableScales() {
4
- return Object.entries(this.scales).map(([k, _]) => k);
5
- }
6
- static getScale(name) {
7
- assert(!(this.scales[name] === undefined), `Scale '${name}' was not found.`);
8
- return this.scales[name];
9
- }
10
- }
11
- SideChainScales.scales = {
12
- // Wimley-White interfacial hydrophobicity scale
13
- 'WimleyWhite': {
14
- '-': 0,
15
- 'A': 0.17,
16
- 'C': -0.24,
17
- 'D': -0.07,
18
- 'E': -0.01,
19
- 'F': -1.13,
20
- 'G': 0.01,
21
- 'H': 0.17,
22
- 'I': -0.31,
23
- 'K': 0.99,
24
- 'L': -0.56,
25
- 'M': -0.23,
26
- 'N': 0.42,
27
- 'P': 0.45,
28
- 'Q': 0.58,
29
- 'R': 0.81,
30
- 'S': 0.13,
31
- 'T': 0.14,
32
- 'V': 0.07,
33
- 'W': -1.85,
34
- 'Y': -0.94,
35
- },
36
- 'categorial': {
37
- '-': 0,
38
- 'A': 1,
39
- 'C': 2,
40
- 'D': 3,
41
- 'E': 4,
42
- 'F': 5,
43
- 'G': 6,
44
- 'H': 7,
45
- 'I': 8,
46
- 'K': 9,
47
- 'L': 10,
48
- 'M': 11,
49
- 'N': 12,
50
- 'P': 13,
51
- 'Q': 14,
52
- 'R': 15,
53
- 'S': 16,
54
- 'T': 17,
55
- 'V': 18,
56
- 'W': 19,
57
- 'Y': 20,
58
- },
59
- };
60
- /**
61
- * Class to categorial encode/decode aligned amino acid residues sequence.
62
- *
63
- * @export
64
- * @class AlignedSequenceEncoder
65
- */
66
- export class AlignedSequenceEncoder {
67
- constructor(scale = 'categorial') {
68
- this.aa2num = SideChainScales.getScale(scale);
69
- this.num2aa = {};
70
- Object.entries(this.aa2num).forEach(([k, v]) => (this.num2aa[v] = k));
71
- }
72
- /**
73
- * Truncate NH2 and -COOH terminals of the given sequence.
74
- *
75
- * @static
76
- * @param {string} seq The sequence provided.
77
- * @return {string} Truncated sequence.
78
- * @memberof AlignedSequenceEncoder
79
- */
80
- static _truncateSequence(seq) {
81
- let start = 0;
82
- let end = seq.length;
83
- const termina = ['NH2', 'COOH'];
84
- if (seq.startsWith(termina[0])) {
85
- const l = termina[0].length; // Cut only 'NH2' without following '-'.
86
- assert(seq[l] == '-', `Wrong sequence format: ${termina[0]} without following '-' in '${seq}'.`);
87
- start = l;
88
- }
89
- if (seq.endsWith(termina[1])) {
90
- const l = termina[1].length + 1; // Cut both 'COOH' and precending '-'.
91
- assert(seq[end - l] == '-', `Wrong sequence format: ${termina[1]} without '-' precending in '${seq}'.`);
92
- end -= l;
93
- }
94
- return seq.substring(start, end);
95
- }
96
- /**
97
- * Cuts auxiliary defises before a residue.
98
- *
99
- * @static
100
- * @param {string} seq The sequence to process.
101
- * @return {string} Processed sequence.
102
- * @memberof AlignedSequenceEncoder
103
- */
104
- static _dropDefises(seq) {
105
- return seq.replace(/(-)([^-]+)/g, '$2');
106
- }
107
- /**
108
- * Performs truncation and cutting auxiliary defises.
109
- *
110
- * @static
111
- * @param {string} sequence The sequence work under process.
112
- * @return {string} Result of cleaning.
113
- * @memberof AlignedSequenceEncoder
114
- */
115
- static clean(sequence) {
116
- return AlignedSequenceEncoder._dropDefises(AlignedSequenceEncoder._truncateSequence(sequence));
117
- }
118
- /**
119
- * Categorial encode of the sequence provided.
120
- *
121
- * @param {string} sequence The sequence.
122
- * @return {number[]} Encoded vector.
123
- * @memberof AlignedSequenceEncoder
124
- */
125
- encode(sequence) {
126
- const nItems = sequence.length;
127
- let values = new Array(nItems).fill(0);
128
- for (let i = 0; i < nItems; ++i) {
129
- let char = sequence[i];
130
- assert(char in this.aa2num, `Unknown char '${char}' found in sequence '${sequence}'`);
131
- values[i] = this.encodeLettter(char);
132
- }
133
- return values;
134
- }
135
- encodeLettter(letter) {
136
- return this.aa2num[letter];
137
- }
138
- /**
139
- * Decode the encoded vector into the sequence back.
140
- *
141
- * @param {number[]} value The vector encoded.
142
- * @return {string} Decoded sequence.
143
- * @memberof AlignedSequenceEncoder
144
- */
145
- decode(value) {
146
- let s = '';
147
- for (let i = 0; i < value.length; ++i) {
148
- let code = value[i];
149
- assert(code in this.num2aa, `Unknown code '${code}' found in vector '${value}'`);
150
- s += this.num2aa[code];
151
- }
152
- return s;
153
- }
154
- }
155
- //# sourceMappingURL=data:application/json;base64,{"version":3,"file":"sequence-encoder.js","sourceRoot":"","sources":["sequence-encoder.ts"],"names":[],"mappings":"AAAA,OAAO,EAAC,MAAM,EAAC,MAAM,cAAc,CAAC;AAKpC,MAAM,eAAe;IAmDjB,MAAM,CAAC,kBAAkB;QACrB,OAAO,MAAM,CAAC,OAAO,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,CAAC;IAC1D,CAAC;IAED,MAAM,CAAC,QAAQ,CAAC,IAAY;QACxB,MAAM,CAAC,CAAC,CAAC,IAAI,CAAC,MAAM,CAAC,IAAI,CAAC,KAAK,SAAS,CAAC,EAAE,UAAU,IAAI,kBAAkB,CAAC,CAAC;QAC7E,OAAO,IAAI,CAAC,MAAM,CAAC,IAAI,CAAC,CAAC;IAC7B,CAAC;;AAzDM,sBAAM,GAA6B;IACtC,gDAAgD;IAChD,aAAa,EAAE;QACX,GAAG,EAAE,CAAC;QACN,GAAG,EAAE,IAAI;QACT,GAAG,EAAE,CAAC,IAAI;QACV,GAAG,EAAE,CAAC,IAAI;QACV,GAAG,EAAE,CAAC,IAAI;QACV,GAAG,EAAE,CAAC,IAAI;QACV,GAAG,EAAE,IAAI;QACT,GAAG,EAAE,IAAI;QACT,GAAG,EAAE,CAAC,IAAI;QACV,GAAG,EAAE,IAAI;QACT,GAAG,EAAE,CAAC,IAAI;QACV,GAAG,EAAE,CAAC,IAAI;QACV,GAAG,EAAE,IAAI;QACT,GAAG,EAAE,IAAI;QACT,GAAG,EAAE,IAAI;QACT,GAAG,EAAE,IAAI;QACT,GAAG,EAAE,IAAI;QACT,GAAG,EAAE,IAAI;QACT,GAAG,EAAE,IAAI;QACT,GAAG,EAAE,CAAC,IAAI;QACV,GAAG,EAAE,CAAC,IAAI;KACb;IACD,YAAY,EAAE;QACV,GAAG,EAAE,CAAC;QACN,GAAG,EAAE,CAAC;QACN,GAAG,EAAE,CAAC;QACN,GAAG,EAAE,CAAC;QACN,GAAG,EAAE,CAAC;QACN,GAAG,EAAE,CAAC;QACN,GAAG,EAAE,CAAC;QACN,GAAG,EAAE,CAAC;QACN,GAAG,EAAE,CAAC;QACN,GAAG,EAAE,CAAC;QACN,GAAG,EAAE,EAAE;QACP,GAAG,EAAE,EAAE;QACP,GAAG,EAAE,EAAE;QACP,GAAG,EAAE,EAAE;QACP,GAAG,EAAE,EAAE;QACP,GAAG,EAAE,EAAE;QACP,GAAG,EAAE,EAAE;QACP,GAAG,EAAE,EAAE;QACP,GAAG,EAAE,EAAE;QACP,GAAG,EAAE,EAAE;QACP,GAAG,EAAE,EAAE;KACV;CACJ,CAAC;AAYN;;;;;GAKG;AACH,MAAM,OAAO,sBAAsB;IAI/B,YAAa,QAAgB,YAAY;QACrC,IAAI,CAAC,MAAM,GAAG,eAAe,CAAC,QAAQ,CAAC,KAAK,CAAC,CAAC;QAC9C,IAAI,CAAC,MAAM,GAAG,EAAE,CAAC;QACjB,MAAM,CAAC,OAAO,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC;IAC1E,CAAC;IAED;;;;;;;OAOG;IACH,MAAM,CAAC,iBAAiB,CAAC,GAAW;QAChC,IAAI,KAAK,GAAG,CAAC,CAAC;QACd,IAAI,GAAG,GAAG,GAAG,CAAC,MAAM,CAAC;QACrB,MAAM,OAAO,GAAG,CAAC,KAAK,EAAE,MAAM,CAAC,CAAC;QAEhC,IAAI,GAAG,CAAC,UAAU,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,EAAE;YAC5B,MAAM,CAAC,GAAG,OAAO,CAAC,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC,wCAAwC;YACrE,MAAM,CAAC,GAAG,CAAC,CAAC,CAAC,IAAI,GAAG,EAAE,0BAA0B,OAAO,CAAC,CAAC,CAAC,8BAA8B,GAAG,IAAI,CAAC,CAAA;YAChG,KAAK,GAAG,CAAC,CAAC;SACb;QACD,IAAI,GAAG,CAAC,QAAQ,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,EAAE;YAC1B,MAAM,CAAC,GAAG,OAAO,CAAC,CAAC,CAAC,CAAC,MAAM,GAAC,CAAC,CAAC,CAAC,sCAAsC;YACrE,MAAM,CAAC,GAAG,CAAC,GAAG,GAAC,CAAC,CAAC,IAAI,GAAG,EAAE,0BAA0B,OAAO,CAAC,CAAC,CAAC,+BAA+B,GAAG,IAAI,CAAC,CAAA;YACrG,GAAG,IAAI,CAAC,CAAC;SACZ;QACD,OAAO,GAAG,CAAC,SAAS,CAAC,KAAK,EAAE,GAAG,CAAC,CAAC;IACrC,CAAC;IAED;;;;;;;OAOG;IACH,MAAM,CAAC,YAAY,CAAC,GAAW;QAC3B,OAAO,GAAG,CAAC,OAAO,CAAC,aAAa,EAAE,IAAI,CAAC,CAAA;IAC3C,CAAC;IAED;;;;;;;OAOG;IACH,MAAM,CAAC,KAAK,CAAC,QAAgB;QACzB,OAAO,sBAAsB,CAAC,YAAY,CAAC,sBAAsB,CAAC,iBAAiB,CAAC,QAAQ,CAAC,CAAC,CAAC;IACnG,CAAC;IAED;;;;;;OAMG;IACI,MAAM,CAAC,QAAgB;QAC1B,MAAM,MAAM,GAAG,QAAQ,CAAC,MAAM,CAAC;QAC/B,IAAI,MAAM,GAAG,IAAI,KAAK,CAAC,MAAM,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;QAEvC,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,MAAM,EAAE,EAAE,CAAC,EAAE;YAC7B,IAAI,IAAI,GAAG,QAAQ,CAAC,CAAC,CAAC,CAAC;YAEvB,MAAM,CAAC,IAAI,IAAI,IAAI,CAAC,MAAM,EAAE,iBAAiB,IAAI,wBAAwB,QAAQ,GAAG,CAAC,CAAC;YAEtF,MAAM,CAAC,CAAC,CAAC,GAAG,IAAI,CAAC,aAAa,CAAC,IAAI,CAAC,CAAC;SACxC;QACD,OAAO,MAAM,CAAC;IAClB,CAAC;IAEM,aAAa,CAAC,MAAc;QAC/B,OAAO,IAAI,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC;IAC/B,CAAC;IAED;;;;;;OAMG;IACI,MAAM,CAAC,KAAe;QACzB,IAAI,CAAC,GAAW,EAAE,CAAC;QAEnB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,KAAK,CAAC,MAAM,EAAE,EAAE,CAAC,EAAE;YACnC,IAAI,IAAI,GAAG,KAAK,CAAC,CAAC,CAAC,CAAC;YAEpB,MAAM,CAAC,IAAI,IAAI,IAAI,CAAC,MAAM,EAAE,iBAAiB,IAAI,sBAAsB,KAAK,GAAG,CAAC,CAAC;YAEjF,CAAC,IAAI,IAAI,CAAC,MAAM,CAAC,IAAI,CAAC,CAAC;SAC1B;QACD,OAAO,CAAC,CAAC;IACb,CAAC;CACJ","sourcesContent":["import {assert} from './operations';\n\ntype SideChainScale = {[name: string]: number};\ntype SideChainScaleCollection = {[name: string]: SideChainScale};\n\nclass SideChainScales {\n    static scales: SideChainScaleCollection = {\n        // Wimley-White interfacial hydrophobicity scale\n        'WimleyWhite': {\n            '-': 0,\n            'A': 0.17,\n            'C': -0.24,\n            'D': -0.07, // Asp-: 1.23\n            'E': -0.01, // Glu-: 2.02\n            'F': -1.13, // \n            'G': 0.01,\n            'H': 0.17, // His+: 0.96\n            'I': -0.31,\n            'K': 0.99, // Lys+\n            'L': -0.56,\n            'M': -0.23,\n            'N': 0.42,\n            'P': 0.45,\n            'Q': 0.58,\n            'R': 0.81, // Arg+\n            'S': 0.13,\n            'T': 0.14,\n            'V': 0.07,\n            'W': -1.85,\n            'Y': -0.94,\n        },\n        'categorial': {\n            '-': 0,\n            'A': 1,\n            'C': 2,\n            'D': 3,\n            'E': 4,\n            'F': 5,\n            'G': 6,\n            'H': 7,\n            'I': 8,\n            'K': 9,\n            'L': 10,\n            'M': 11,\n            'N': 12,\n            'P': 13,\n            'Q': 14,\n            'R': 15,\n            'S': 16,\n            'T': 17,\n            'V': 18,\n            'W': 19,\n            'Y': 20,\n        },\n    };\n\n    static getAvailableScales(): string[] {\n        return Object.entries(this.scales).map(([k, _]) => k);\n    }\n\n    static getScale(name: string): SideChainScale {\n        assert(!(this.scales[name] === undefined), `Scale '${name}' was not found.`);\n        return this.scales[name];\n    }\n}\n\n/**\n * Class to categorial encode/decode aligned amino acid residues sequence.\n *\n * @export\n * @class AlignedSequenceEncoder\n */\nexport class AlignedSequenceEncoder {\n    protected aa2num: SideChainScale;\n    protected num2aa: {[code: number]: string};\n\n    constructor (scale: string = 'categorial') {\n        this.aa2num = SideChainScales.getScale(scale);\n        this.num2aa = {};\n        Object.entries(this.aa2num).forEach(([k, v]) => (this.num2aa[v] = k));\n    }\n\n    /**\n     * Truncate NH2 and -COOH terminals of the given sequence.\n     *\n     * @static\n     * @param {string} seq The sequence provided.\n     * @return {string} Truncated sequence.\n     * @memberof AlignedSequenceEncoder\n     */\n    static _truncateSequence(seq: string): string {\n        let start = 0;\n        let end = seq.length;\n        const termina = ['NH2', 'COOH'];\n    \n        if (seq.startsWith(termina[0])) {\n            const l = termina[0].length; // Cut only 'NH2' without following '-'.\n            assert(seq[l] == '-', `Wrong sequence format: ${termina[0]} without following '-' in '${seq}'.`)\n            start = l;\n        }\n        if (seq.endsWith(termina[1])) {\n            const l = termina[1].length+1; // Cut both 'COOH' and precending '-'.\n            assert(seq[end-l] == '-', `Wrong sequence format: ${termina[1]} without '-' precending in '${seq}'.`)\n            end -= l;\n        }\n        return seq.substring(start, end);\n    }\n\n    /**\n     * Cuts auxiliary defises before a residue.\n     *\n     * @static\n     * @param {string} seq The sequence to process.\n     * @return {string} Processed sequence.\n     * @memberof AlignedSequenceEncoder\n     */\n    static _dropDefises(seq: string): string {\n        return seq.replace(/(-)([^-]+)/g, '$2')\n    }\n\n    /**\n     * Performs truncation and cutting auxiliary defises.\n     *\n     * @static\n     * @param {string} sequence The sequence work under process.\n     * @return {string} Result of cleaning.\n     * @memberof AlignedSequenceEncoder\n     */\n    static clean(sequence: string): string {\n        return AlignedSequenceEncoder._dropDefises(AlignedSequenceEncoder._truncateSequence(sequence));\n    }\n\n    /**\n     * Categorial encode of the sequence provided.\n     *\n     * @param {string} sequence The sequence.\n     * @return {number[]} Encoded vector.\n     * @memberof AlignedSequenceEncoder\n     */\n    public encode(sequence: string): number[] {\n        const nItems = sequence.length;\n        let values = new Array(nItems).fill(0);\n    \n        for (let i = 0; i < nItems; ++i) {\n            let char = sequence[i];\n    \n            assert(char in this.aa2num, `Unknown char '${char}' found in sequence '${sequence}'`);\n    \n            values[i] = this.encodeLettter(char);\n        }\n        return values;\n    }\n\n    public encodeLettter(letter: string): number {\n        return this.aa2num[letter];\n    }\n\n    /**\n     * Decode the encoded vector into the sequence back.\n     *\n     * @param {number[]} value The vector encoded.\n     * @return {string} Decoded sequence.\n     * @memberof AlignedSequenceEncoder\n     */\n    public decode(value: number[]): string {\n        let s: string = '';\n    \n        for (let i = 0; i < value.length; ++i) {\n            let code = value[i];\n\n            assert(code in this.num2aa, `Unknown code '${code}' found in vector '${value}'`);\n\n            s += this.num2aa[code];\n        }\n        return s;\n    }\n}\n"]}
package/src/spe.d.ts DELETED
@@ -1,68 +0,0 @@
1
- import { Options, Coordinates, Vectors, DistanceMetric } from './type-declarations';
2
- /**
3
- * Implements stochastic proximity embedding.
4
- *
5
- * @export
6
- * @class SPEBase
7
- * @link doi:10.1016/S1093-3263(03)00155-4
8
- */
9
- export declare class SPEBase {
10
- protected static dimension: number;
11
- protected steps: number;
12
- protected cycles: number;
13
- protected cutoff: number;
14
- protected lambda: number;
15
- protected dlambda: number;
16
- protected lambda2: number;
17
- protected dlambda2: number;
18
- protected epsilon: number;
19
- protected distanceFunction: DistanceMetric;
20
- protected distance: Coordinates;
21
- /**
22
- * Creates an instance of SPEBase.
23
- * @param {Options} [options] Options to pass to the constructor.
24
- * @memberof SPEBase
25
- */
26
- constructor(options?: Options);
27
- /**
28
- * Initializes distance matrix.
29
- *
30
- * @protected
31
- * @param {Vectors} vectors Input vectors to calculate distance between.
32
- * @memberof SPEBase
33
- */
34
- protected initDistance(vectors: Vectors): void;
35
- /**
36
- * Calculates distance between the two vectors given.
37
- *
38
- * @param {Vectors} vectors Set of vectors to calculate distances between.
39
- * @param {number} index1 Index of the first vector of the pair.
40
- * @param {number} index2 Index of the second vector of the pair.
41
- * @return {number} Distance between these two vectors.
42
- */
43
- protected calcDistance(vectors: Vectors, index1: number, index2: number): number;
44
- /**
45
- * Embeds the vectors given into a two-dimensional space.
46
- *
47
- * @param {Vectors} vectors D-dimensional coordinates.
48
- * @return {Coordinates} SPE coordinates in D space.
49
- */
50
- embed(vectors: Vectors): Coordinates;
51
- }
52
- /**
53
- * Implements modified stochastic proximity embedding.
54
- *
55
- * @export
56
- * @class PSPEBase
57
- * @link doi:10.1016/S1093-3263(03)00155-4
58
- */
59
- export declare class PSPEBase extends SPEBase {
60
- /**
61
- * Embeds the vectors given into a two-dimensional space using a modified update rule.
62
- *
63
- * @param {Vectors} vectors D-dimensional coordinates.
64
- * @return {Coordinates} SPE coordinates in D space.
65
- */
66
- embed(vectors: Vectors): Coordinates;
67
- }
68
- //# sourceMappingURL=spe.d.ts.map
package/src/spe.d.ts.map DELETED
@@ -1 +0,0 @@
1
- {"version":3,"file":"spe.d.ts","sourceRoot":"","sources":["spe.ts"],"names":[],"mappings":"AAAA,OAAO,EAAC,OAAO,EAAE,WAAW,EAAE,OAAO,EAAE,cAAc,EAAC,MAAM,qBAAqB,CAAC;AAGlF;;;;;;GAMG;AACH,qBAAa,OAAO;IAClB,SAAS,CAAC,MAAM,CAAC,SAAS,SAAK;IAC/B,SAAS,CAAC,KAAK,EAAE,MAAM,CAAC;IACxB,SAAS,CAAC,MAAM,EAAE,MAAM,CAAC;IACzB,SAAS,CAAC,MAAM,EAAE,MAAM,CAAC;IACzB,SAAS,CAAC,MAAM,EAAE,MAAM,CAAC;IACzB,SAAS,CAAC,OAAO,EAAE,MAAM,CAAC;IAC1B,SAAS,CAAC,OAAO,EAAE,MAAM,CAAC;IAC1B,SAAS,CAAC,QAAQ,EAAE,MAAM,CAAC;IAC3B,SAAS,CAAC,OAAO,EAAE,MAAM,CAAC;IAC1B,SAAS,CAAC,gBAAgB,EAAE,cAAc,CAAC;IAC3C,SAAS,CAAC,QAAQ,EAAE,WAAW,CAAC;IAEhC;;;;OAIG;gBACS,OAAO,CAAC,EAAE,OAAO;IAgB7B;;;;;;OAMG;IACH,SAAS,CAAC,YAAY,CAAC,OAAO,EAAE,OAAO;IAIvC;;;;;;;OAOG;IACH,SAAS,CAAC,YAAY,CAAC,OAAO,EAAE,OAAO,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,GAAG,MAAM;IAIhF;;;;;OAKG;IACI,KAAK,CAAC,OAAO,EAAE,OAAO,GAAG,WAAW;CA4C5C;AAED;;;;;;GAMG;AACF,qBAAa,QAAS,SAAQ,OAAO;IACpC;;;;;OAKG;IACI,KAAK,CAAC,OAAO,EAAE,OAAO,GAAG,WAAW;CAsC5C"}
package/src/spe.js DELETED
@@ -1,151 +0,0 @@
1
- import { calculateEuclideanDistance, calcDistanceMatrix, fillRandomMatrix, vectorAdd, randomInt } from './operations';
2
- /**
3
- * Implements stochastic proximity embedding.
4
- *
5
- * @export
6
- * @class SPEBase
7
- * @link doi:10.1016/S1093-3263(03)00155-4
8
- */
9
- export class SPEBase {
10
- /**
11
- * Creates an instance of SPEBase.
12
- * @param {Options} [options] Options to pass to the constructor.
13
- * @memberof SPEBase
14
- */
15
- constructor(options) {
16
- var _a, _b, _c, _d, _e, _f, _g;
17
- this.steps = (_a = options === null || options === void 0 ? void 0 : options.steps) !== null && _a !== void 0 ? _a : 0;
18
- this.cycles = (_b = options === null || options === void 0 ? void 0 : options.cycles) !== null && _b !== void 0 ? _b : 1e6;
19
- // Select a cutoff distance {cutoff} and ...
20
- this.cutoff = (_c = options === null || options === void 0 ? void 0 : options.cutoff) !== null && _c !== void 0 ? _c : 0;
21
- // ... an initial learning rate {lambda} > 0
22
- this.lambda = (_d = options === null || options === void 0 ? void 0 : options.lambda) !== null && _d !== void 0 ? _d : 2.0;
23
- this.dlambda = (_e = options === null || options === void 0 ? void 0 : options.dlambda) !== null && _e !== void 0 ? _e : 0.01;
24
- this.lambda2 = this.lambda / 2.;
25
- this.dlambda2 = this.dlambda / 2.;
26
- this.epsilon = (_f = options === null || options === void 0 ? void 0 : options.epsilon) !== null && _f !== void 0 ? _f : 1e-10;
27
- // eslint-disable-next-line brace-style
28
- this.distanceFunction = (_g = options === null || options === void 0 ? void 0 : options.distance) !== null && _g !== void 0 ? _g : calculateEuclideanDistance;
29
- this.distance = [];
30
- }
31
- /**
32
- * Initializes distance matrix.
33
- *
34
- * @protected
35
- * @param {Vectors} vectors Input vectors to calculate distance between.
36
- * @memberof SPEBase
37
- */
38
- initDistance(vectors) {
39
- this.distance = calcDistanceMatrix(vectors, this.distanceFunction);
40
- }
41
- /**
42
- * Calculates distance between the two vectors given.
43
- *
44
- * @param {Vectors} vectors Set of vectors to calculate distances between.
45
- * @param {number} index1 Index of the first vector of the pair.
46
- * @param {number} index2 Index of the second vector of the pair.
47
- * @return {number} Distance between these two vectors.
48
- */
49
- calcDistance(vectors, index1, index2) {
50
- return this.distance[index1][index2];
51
- }
52
- /**
53
- * Embeds the vectors given into a two-dimensional space.
54
- *
55
- * @param {Vectors} vectors D-dimensional coordinates.
56
- * @return {Coordinates} SPE coordinates in D space.
57
- */
58
- embed(vectors) {
59
- const nItems = vectors.length;
60
- const areaWidth = 40;
61
- // Initialize the D-dimensional coordinates of the N points.
62
- const coordinates = fillRandomMatrix(nItems, SPEBase.dimension, areaWidth);
63
- let lambda2 = this.lambda2;
64
- if (this.steps == 0) {
65
- this.steps = vectors.length - 1;
66
- }
67
- this.initDistance(vectors);
68
- for (let cycle = 0; cycle < this.cycles; ++cycle) {
69
- for (let step = 0; step < this.steps; ++step) {
70
- // Select two points, i and j, at random, ...
71
- const i = randomInt(nItems);
72
- let j = randomInt(nItems);
73
- while (i == j)
74
- j = randomInt(nItems);
75
- const rowi = coordinates[i];
76
- const rowj = coordinates[j];
77
- // ... retrieve (or evaluate) their proximity in the input space, rij and ...
78
- const r = this.calcDistance(vectors, i, j);
79
- // ... compute their Euclidean distance on the D-dimensional map, dij.
80
- const d = calculateEuclideanDistance(rowi, rowj);
81
- // If rij <= rc, or if rij > rc and dij < rij ...
82
- if ((this.cutoff == 0) || (r <= this.cutoff) || (d < r)) {
83
- const multiplier = lambda2 * (r - d) / (d + this.epsilon);
84
- // ... update the coordinates xi and xj.
85
- const diffIJ = vectorAdd(rowi, rowj, -1);
86
- coordinates[i] = vectorAdd(rowi, diffIJ, multiplier);
87
- coordinates[j] = vectorAdd(rowj, diffIJ, -multiplier);
88
- }
89
- }
90
- // Decrease the learning rate {lambda} by a prescribed {dlambda}.
91
- lambda2 -= this.dlambda2;
92
- if (lambda2 <= 0.) {
93
- break;
94
- }
95
- }
96
- return coordinates;
97
- }
98
- }
99
- SPEBase.dimension = 2;
100
- /**
101
- * Implements modified stochastic proximity embedding.
102
- *
103
- * @export
104
- * @class PSPEBase
105
- * @link doi:10.1016/S1093-3263(03)00155-4
106
- */
107
- export class PSPEBase extends SPEBase {
108
- /**
109
- * Embeds the vectors given into a two-dimensional space using a modified update rule.
110
- *
111
- * @param {Vectors} vectors D-dimensional coordinates.
112
- * @return {Coordinates} SPE coordinates in D space.
113
- */
114
- embed(vectors) {
115
- const nItems = vectors.length;
116
- const areaWidth = 40;
117
- // Initialize the D-dimensional coordinates of the N points.
118
- const coordinates = fillRandomMatrix(nItems, PSPEBase.dimension, areaWidth);
119
- let lambda = this.lambda;
120
- this.initDistance(vectors);
121
- for (let cycle = 0; cycle < this.cycles; ++cycle) {
122
- // Select a point, i, at random (pivot).
123
- const i = randomInt(nItems);
124
- const rowi = coordinates[i];
125
- // For every point j != i ...
126
- for (let j = 0; j < nItems; ++j) {
127
- if (i == j)
128
- continue;
129
- const rowj = coordinates[j];
130
- // ... retrieve (or evaluate) its proximity to i in the input space, rij ...
131
- const r = this.calcDistance(vectors, i, j);
132
- // ... and compute their Euclidean distance on the D-dimensional map, dij.
133
- const d = calculateEuclideanDistance(rowi, rowj);
134
- // If rij <= rc, or if rij > rc and dij < rij ...
135
- if ((this.cutoff == 0) || (r <= this.cutoff) || (d < r)) {
136
- const multiplier = lambda * (r - d) / (d + this.epsilon);
137
- const diffIJ = vectorAdd(rowi, rowj, -1);
138
- // ... update the coordinates xj.
139
- coordinates[j] = vectorAdd(rowj, diffIJ, -multiplier);
140
- }
141
- }
142
- // Decrease the learning rate {lambda} by a prescribed {dlambda}.
143
- lambda -= this.dlambda;
144
- if (lambda <= 0.) {
145
- break;
146
- }
147
- }
148
- return coordinates;
149
- }
150
- }
151
- //# sourceMappingURL=data:application/json;base64,{"version":3,"file":"spe.js","sourceRoot":"","sources":["spe.ts"],"names":[],"mappings":"AACA,OAAO,EAAC,0BAA0B,EAAE,kBAAkB,EAAE,gBAAgB,EAAE,SAAS,EAAE,SAAS,EAAC,MAAM,cAAc,CAAC;AAEpH;;;;;;GAMG;AACH,MAAM,OAAO,OAAO;IAalB;;;;OAIG;IACH,YAAY,OAAiB;;QAC3B,IAAI,CAAC,KAAK,GAAG,MAAA,OAAO,aAAP,OAAO,uBAAP,OAAO,CAAE,KAAK,mCAAI,CAAC,CAAC;QACjC,IAAI,CAAC,MAAM,GAAG,MAAA,OAAO,aAAP,OAAO,uBAAP,OAAO,CAAE,MAAM,mCAAI,GAAG,CAAC;QACrC,4CAA4C;QAC5C,IAAI,CAAC,MAAM,GAAG,MAAA,OAAO,aAAP,OAAO,uBAAP,OAAO,CAAE,MAAM,mCAAI,CAAC,CAAC;QACnC,4CAA4C;QAC5C,IAAI,CAAC,MAAM,GAAG,MAAA,OAAO,aAAP,OAAO,uBAAP,OAAO,CAAE,MAAM,mCAAI,GAAG,CAAC;QACrC,IAAI,CAAC,OAAO,GAAG,MAAA,OAAO,aAAP,OAAO,uBAAP,OAAO,CAAE,OAAO,mCAAI,IAAI,CAAC;QACxC,IAAI,CAAC,OAAO,GAAG,IAAI,CAAC,MAAM,GAAC,EAAE,CAAC;QAC9B,IAAI,CAAC,QAAQ,GAAG,IAAI,CAAC,OAAO,GAAC,EAAE,CAAC;QAChC,IAAI,CAAC,OAAO,GAAG,MAAA,OAAO,aAAP,OAAO,uBAAP,OAAO,CAAE,OAAO,mCAAI,KAAK,CAAC;QACzC,uCAAuC;QACvC,IAAI,CAAC,gBAAgB,GAAG,MAAA,OAAO,aAAP,OAAO,uBAAP,OAAO,CAAE,QAAQ,mCAAI,0BAA0B,CAAC;QACxE,IAAI,CAAC,QAAQ,GAAG,EAAE,CAAC;IACrB,CAAC;IAED;;;;;;OAMG;IACO,YAAY,CAAC,OAAgB;QACrC,IAAI,CAAC,QAAQ,GAAG,kBAAkB,CAAC,OAAO,EAAE,IAAI,CAAC,gBAAgB,CAAC,CAAC;IACrE,CAAC;IAED;;;;;;;OAOG;IACO,YAAY,CAAC,OAAgB,EAAE,MAAc,EAAE,MAAc;QACrE,OAAO,IAAI,CAAC,QAAQ,CAAC,MAAM,CAAC,CAAC,MAAM,CAAC,CAAC;IACvC,CAAC;IAED;;;;;OAKG;IACI,KAAK,CAAC,OAAgB;QAC3B,MAAM,MAAM,GAAG,OAAO,CAAC,MAAM,CAAC;QAC9B,MAAM,SAAS,GAAG,EAAE,CAAC;QACrB,4DAA4D;QAC5D,MAAM,WAAW,GAAG,gBAAgB,CAAC,MAAM,EAAE,OAAO,CAAC,SAAS,EAAE,SAAS,CAAC,CAAC;QAE3E,IAAI,OAAO,GAAG,IAAI,CAAC,OAAO,CAAC;QAE3B,IAAI,IAAI,CAAC,KAAK,IAAI,CAAC,EAAE;YACnB,IAAI,CAAC,KAAK,GAAG,OAAO,CAAC,MAAM,GAAC,CAAC,CAAC;SAC/B;QAED,IAAI,CAAC,YAAY,CAAC,OAAO,CAAC,CAAC;QAE3B,KAAK,IAAI,KAAK,GAAG,CAAC,EAAE,KAAK,GAAG,IAAI,CAAC,MAAM,EAAE,EAAE,KAAK,EAAE;YAChD,KAAK,IAAI,IAAI,GAAG,CAAC,EAAE,IAAI,GAAG,IAAI,CAAC,KAAK,EAAE,EAAE,IAAI,EAAE;gBAC5C,6CAA6C;gBAC7C,MAAM,CAAC,GAAG,SAAS,CAAC,MAAM,CAAC,CAAC;gBAAC,IAAI,CAAC,GAAG,SAAS,CAAC,MAAM,CAAC,CAAC;gBACvD,OAAO,CAAC,IAAI,CAAC;oBAAE,CAAC,GAAG,SAAS,CAAC,MAAM,CAAC,CAAC;gBAErC,MAAM,IAAI,GAAG,WAAW,CAAC,CAAC,CAAC,CAAC;gBAAC,MAAM,IAAI,GAAG,WAAW,CAAC,CAAC,CAAC,CAAC;gBAEzD,6EAA6E;gBAC7E,MAAM,CAAC,GAAG,IAAI,CAAC,YAAY,CAAC,OAAO,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC;gBAC3C,sEAAsE;gBACtE,MAAM,CAAC,GAAG,0BAA0B,CAAC,IAAI,EAAE,IAAI,CAAC,CAAC;gBAEjD,iDAAiD;gBACjD,IAAI,CAAC,IAAI,CAAC,MAAM,IAAI,CAAC,CAAC,IAAI,CAAC,CAAC,IAAI,IAAI,CAAC,MAAM,CAAC,IAAI,CAAC,CAAC,GAAG,CAAC,CAAC,EAAE;oBACvD,MAAM,UAAU,GAAG,OAAO,GAAC,CAAC,CAAC,GAAC,CAAC,CAAC,GAAC,CAAC,CAAC,GAAC,IAAI,CAAC,OAAO,CAAC,CAAC;oBAClD,wCAAwC;oBACxC,MAAM,MAAM,GAAG,SAAS,CAAC,IAAI,EAAE,IAAI,EAAE,CAAC,CAAC,CAAC,CAAC;oBACzC,WAAW,CAAC,CAAC,CAAC,GAAG,SAAS,CAAC,IAAI,EAAE,MAAM,EAAE,UAAU,CAAC,CAAC;oBACrD,WAAW,CAAC,CAAC,CAAC,GAAG,SAAS,CAAC,IAAI,EAAE,MAAM,EAAE,CAAC,UAAU,CAAC,CAAC;iBACvD;aACF;YACD,iEAAiE;YACjE,OAAO,IAAI,IAAI,CAAC,QAAQ,CAAC;YACzB,IAAI,OAAO,IAAI,EAAE,EAAE;gBACjB,MAAM;aACP;SACF;QACD,OAAO,WAAW,CAAC;IACrB,CAAC;;AAzGgB,iBAAS,GAAG,CAAC,CAAC;AA4GjC;;;;;;GAMG;AACF,MAAM,OAAO,QAAS,SAAQ,OAAO;IACpC;;;;;OAKG;IACI,KAAK,CAAC,OAAgB;QAC3B,MAAM,MAAM,GAAG,OAAO,CAAC,MAAM,CAAC;QAC9B,MAAM,SAAS,GAAG,EAAE,CAAC;QACrB,6DAA6D;QAC7D,MAAM,WAAW,GAAG,gBAAgB,CAAC,MAAM,EAAE,QAAQ,CAAC,SAAS,EAAE,SAAS,CAAC,CAAC;QAC5E,IAAI,MAAM,GAAG,IAAI,CAAC,MAAM,CAAC;QAEzB,IAAI,CAAC,YAAY,CAAC,OAAO,CAAC,CAAC;QAE3B,KAAK,IAAI,KAAK,GAAG,CAAC,EAAE,KAAK,GAAG,IAAI,CAAC,MAAM,EAAE,EAAE,KAAK,EAAE;YAChD,wCAAwC;YACxC,MAAM,CAAC,GAAW,SAAS,CAAC,MAAM,CAAC,CAAC;YACpC,MAAM,IAAI,GAAG,WAAW,CAAC,CAAC,CAAC,CAAC;YAE5B,6BAA6B;YAC7B,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,MAAM,EAAE,EAAE,CAAC,EAAE;gBAC/B,IAAI,CAAC,IAAI,CAAC;oBAAE,SAAS;gBACrB,MAAM,IAAI,GAAG,WAAW,CAAC,CAAC,CAAC,CAAC;gBAC5B,4EAA4E;gBAC5E,MAAM,CAAC,GAAG,IAAI,CAAC,YAAY,CAAC,OAAO,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC;gBAC3C,0EAA0E;gBAC1E,MAAM,CAAC,GAAG,0BAA0B,CAAC,IAAI,EAAE,IAAI,CAAC,CAAC;gBACjD,iDAAiD;gBACjD,IAAI,CAAC,IAAI,CAAC,MAAM,IAAI,CAAC,CAAC,IAAI,CAAC,CAAC,IAAI,IAAI,CAAC,MAAM,CAAC,IAAI,CAAC,CAAC,GAAG,CAAC,CAAC,EAAE;oBACvD,MAAM,UAAU,GAAG,MAAM,GAAC,CAAC,CAAC,GAAC,CAAC,CAAC,GAAC,CAAC,CAAC,GAAC,IAAI,CAAC,OAAO,CAAC,CAAC;oBACjD,MAAM,MAAM,GAAG,SAAS,CAAC,IAAI,EAAE,IAAI,EAAE,CAAC,CAAC,CAAC,CAAC;oBACzC,iCAAiC;oBACjC,WAAW,CAAC,CAAC,CAAC,GAAG,SAAS,CAAC,IAAI,EAAE,MAAM,EAAE,CAAC,UAAU,CAAC,CAAC;iBACvD;aACF;YACD,iEAAiE;YACjE,MAAM,IAAI,IAAI,CAAC,OAAO,CAAC;YACvB,IAAI,MAAM,IAAI,EAAE,EAAE;gBAChB,MAAM;aACP;SACF;QACD,OAAO,WAAW,CAAC;IACrB,CAAC;CACF","sourcesContent":["import {Options, Coordinates, Vectors, DistanceMetric} from './type-declarations';\nimport {calculateEuclideanDistance, calcDistanceMatrix, fillRandomMatrix, vectorAdd, randomInt} from './operations';\n\n/**\n * Implements stochastic proximity embedding.\n *\n * @export\n * @class SPEBase\n * @link doi:10.1016/S1093-3263(03)00155-4\n */\nexport class SPEBase {\n  protected static dimension = 2;\n  protected steps: number;\n  protected cycles: number;\n  protected cutoff: number;\n  protected lambda: number;\n  protected dlambda: number;\n  protected lambda2: number;\n  protected dlambda2: number;\n  protected epsilon: number;\n  protected distanceFunction: DistanceMetric;\n  protected distance: Coordinates;\n\n  /**\n   * Creates an instance of SPEBase.\n   * @param {Options} [options] Options to pass to the constructor.\n   * @memberof SPEBase\n   */\n  constructor(options?: Options) {\n    this.steps = options?.steps ?? 0;\n    this.cycles = options?.cycles ?? 1e6;\n    // Select a cutoff distance {cutoff} and ...\n    this.cutoff = options?.cutoff ?? 0;\n    // ... an initial learning rate {lambda} > 0\n    this.lambda = options?.lambda ?? 2.0;\n    this.dlambda = options?.dlambda ?? 0.01;\n    this.lambda2 = this.lambda/2.;\n    this.dlambda2 = this.dlambda/2.;\n    this.epsilon = options?.epsilon ?? 1e-10;\n    // eslint-disable-next-line brace-style\n    this.distanceFunction = options?.distance ?? calculateEuclideanDistance;\n    this.distance = [];\n  }\n\n  /**\n   * Initializes distance matrix.\n   *\n   * @protected\n   * @param {Vectors} vectors Input vectors to calculate distance between.\n   * @memberof SPEBase\n   */\n  protected initDistance(vectors: Vectors) {\n    this.distance = calcDistanceMatrix(vectors, this.distanceFunction);\n  }\n\n  /**\n   * Calculates distance between the two vectors given.\n   * \n   * @param {Vectors} vectors Set of vectors to calculate distances between.\n   * @param {number} index1 Index of the first vector of the pair.\n   * @param {number} index2 Index of the second vector of the pair.\n   * @return {number} Distance between these two vectors.\n   */\n  protected calcDistance(vectors: Vectors, index1: number, index2: number): number {\n    return this.distance[index1][index2];\n  }\n\n  /**\n   * Embeds the vectors given into a two-dimensional space.\n   * \n   * @param {Vectors} vectors D-dimensional coordinates.\n   * @return {Coordinates} SPE coordinates in D space.\n   */\n  public embed(vectors: Vectors): Coordinates {\n    const nItems = vectors.length;\n    const areaWidth = 40;\n    // Initialize the D-dimensional coordinates of the N points.\n    const coordinates = fillRandomMatrix(nItems, SPEBase.dimension, areaWidth);\n\n    let lambda2 = this.lambda2;\n\n    if (this.steps == 0) {\n      this.steps = vectors.length-1;\n    }\n\n    this.initDistance(vectors);\n\n    for (let cycle = 0; cycle < this.cycles; ++cycle) {\n      for (let step = 0; step < this.steps; ++step) {\n        // Select two points, i and j, at random, ...\n        const i = randomInt(nItems); let j = randomInt(nItems);\n        while (i == j) j = randomInt(nItems);\n\n        const rowi = coordinates[i]; const rowj = coordinates[j];\n\n        // ... retrieve (or evaluate) their proximity in the input space, rij and ...\n        const r = this.calcDistance(vectors, i, j);\n        // ... compute their Euclidean distance on the D-dimensional map, dij.\n        const d = calculateEuclideanDistance(rowi, rowj);\n\n        // If rij <= rc, or if rij > rc and dij < rij ...\n        if ((this.cutoff == 0) || (r <= this.cutoff) || (d < r)) {\n          const multiplier = lambda2*(r-d)/(d+this.epsilon);\n          // ... update the coordinates xi and xj.\n          const diffIJ = vectorAdd(rowi, rowj, -1);\n          coordinates[i] = vectorAdd(rowi, diffIJ, multiplier);\n          coordinates[j] = vectorAdd(rowj, diffIJ, -multiplier);\n        }\n      }\n      // Decrease the learning rate {lambda} by a prescribed {dlambda}.\n      lambda2 -= this.dlambda2;\n      if (lambda2 <= 0.) {\n        break;\n      }\n    }\n    return coordinates;\n  }\n}\n\n/**\n * Implements modified stochastic proximity embedding.\n *\n * @export\n * @class PSPEBase\n * @link doi:10.1016/S1093-3263(03)00155-4\n */\n export class PSPEBase extends SPEBase {\n  /**\n   * Embeds the vectors given into a two-dimensional space using a modified update rule.\n   * \n   * @param {Vectors} vectors D-dimensional coordinates.\n   * @return {Coordinates} SPE coordinates in D space.\n   */\n  public embed(vectors: Vectors): Coordinates {\n    const nItems = vectors.length;\n    const areaWidth = 40;\n    //  Initialize the D-dimensional coordinates of the N points.\n    const coordinates = fillRandomMatrix(nItems, PSPEBase.dimension, areaWidth);\n    let lambda = this.lambda;\n\n    this.initDistance(vectors);\n\n    for (let cycle = 0; cycle < this.cycles; ++cycle) {\n      // Select a point, i, at random (pivot).\n      const i: number = randomInt(nItems);\n      const rowi = coordinates[i];\n\n      // For every point j != i ...\n      for (let j = 0; j < nItems; ++j) {\n        if (i == j) continue;\n        const rowj = coordinates[j];\n        // ... retrieve (or evaluate) its proximity to i in the input space, rij ...\n        const r = this.calcDistance(vectors, i, j);\n        // ... and compute their Euclidean distance on the D-dimensional map, dij.\n        const d = calculateEuclideanDistance(rowi, rowj);\n        // If rij <= rc, or if rij > rc and dij < rij ...\n        if ((this.cutoff == 0) || (r <= this.cutoff) || (d < r)) {\n          const multiplier = lambda*(r-d)/(d+this.epsilon);\n          const diffIJ = vectorAdd(rowi, rowj, -1);\n          // ... update the coordinates xj.\n          coordinates[j] = vectorAdd(rowj, diffIJ, -multiplier);\n        }\n      }\n      // Decrease the learning rate {lambda} by a prescribed {dlambda}.\n      lambda -= this.dlambda;\n      if (lambda <= 0.) {\n        break;\n      }\n    }\n    return coordinates;\n  }\n}\n"]}
@@ -1,33 +0,0 @@
1
- import { DistanceMetric } from './type-declarations';
2
- /**
3
- * Unified class implementing the different string measures.
4
- *
5
- * @export
6
- * @class Measurer
7
- */
8
- export declare class Measurer {
9
- protected method: string;
10
- static receipt: {
11
- [name: string]: DistanceMetric;
12
- };
13
- /**
14
- * Creates an instance of Measurer.
15
- * @param {string} method Method to calculate distance between strings.
16
- * @memberof Measurer
17
- */
18
- constructor(method: string);
19
- /**
20
- * Returns custom string distance function specified.
21
- * @return {DistanceMetric} Callback of the measure chosen.
22
- */
23
- getMeasure(): DistanceMetric;
24
- /**
25
- * Returns available string distance metrics.
26
- *
27
- * @readonly
28
- * @type {string[]}
29
- * @memberof Measurer
30
- */
31
- static get availableMeasures(): string[];
32
- }
33
- //# sourceMappingURL=string-measure.d.ts.map
@@ -1 +0,0 @@
1
- {"version":3,"file":"string-measure.d.ts","sourceRoot":"","sources":["string-measure.ts"],"names":[],"mappings":"AAGA,OAAO,EAAC,cAAc,EAAC,MAAM,qBAAqB,CAAC;AAGnD;;;;;GAKG;AACH,qBAAa,QAAQ;IACjB,SAAS,CAAC,MAAM,EAAE,MAAM,CAAC;IACzB,OAAc,OAAO,EAAE;QAAC,CAAC,IAAI,EAAE,MAAM,GAAG,cAAc,CAAA;KAAC,CAGrD;IAEF;;;;OAIG;gBACS,MAAM,EAAE,MAAM;IAK1B;;;OAGG;IACI,UAAU,IAAI,cAAc;IAInC;;;;;;OAMG;IACH,WAAkB,iBAAiB,IAAK,MAAM,EAAE,CAO/C;CAEJ"}
@@ -1,46 +0,0 @@
1
- import * as fl from 'fastest-levenshtein';
2
- import { jaroWinkler } from 'jaro-winkler-typescript';
3
- import { assert } from './operations';
4
- /**
5
- * Unified class implementing the different string measures.
6
- *
7
- * @export
8
- * @class Measurer
9
- */
10
- export class Measurer {
11
- /**
12
- * Creates an instance of Measurer.
13
- * @param {string} method Method to calculate distance between strings.
14
- * @memberof Measurer
15
- */
16
- constructor(method) {
17
- assert(Measurer.availableMeasures.includes(method), 'The ${method} was not found.');
18
- this.method = method;
19
- }
20
- /**
21
- * Returns custom string distance function specified.
22
- * @return {DistanceMetric} Callback of the measure chosen.
23
- */
24
- getMeasure() {
25
- return Measurer.receipt[this.method];
26
- }
27
- /**
28
- * Returns available string distance metrics.
29
- *
30
- * @readonly
31
- * @type {string[]}
32
- * @memberof Measurer
33
- */
34
- static get availableMeasures() {
35
- let keys = [];
36
- for (let key in Measurer.receipt) {
37
- keys.push(key);
38
- }
39
- return keys;
40
- }
41
- }
42
- Measurer.receipt = {
43
- 'Levenshtein': fl.distance,
44
- 'Jaro-Winkler': jaroWinkler,
45
- };
46
- //# sourceMappingURL=data:application/json;base64,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