@datagrok-libraries/bio 6.0.4 → 6.0.7

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (604) hide show
  1. package/.turbo/turbo-build.log +5 -0
  2. package/CLAUDE.md +1 -1
  3. package/LICENSE.md +16 -0
  4. package/cleanup +0 -0
  5. package/dist/src/aminoacids.d.ts.map +1 -0
  6. package/dist/src/aminoacids.js.map +1 -0
  7. package/dist/src/chem/rdkit-module.d.ts.map +1 -0
  8. package/dist/src/chem/rdkit-module.js.map +1 -0
  9. package/dist/src/consts/index.d.ts.map +1 -0
  10. package/dist/src/consts/index.js.map +1 -0
  11. package/dist/src/helm/consts.d.ts.map +1 -0
  12. package/dist/src/helm/consts.js.map +1 -0
  13. package/dist/src/helm/helm-helper.d.ts.map +1 -0
  14. package/dist/src/helm/helm-helper.js.map +1 -0
  15. package/dist/src/helm/types.d.ts.map +1 -0
  16. package/dist/src/helm/types.js.map +1 -0
  17. package/dist/src/helm/utils.d.ts.map +1 -0
  18. package/dist/src/helm/utils.js.map +1 -0
  19. package/dist/src/molecule/molecule-build-data.d.ts.map +1 -0
  20. package/dist/src/molecule/molecule-build-data.js.map +1 -0
  21. package/dist/src/molecule/molecule-units-handler.d.ts.map +1 -0
  22. package/dist/src/molecule/molecule-units-handler.js.map +1 -0
  23. package/dist/src/molecule/types.d.ts.map +1 -0
  24. package/dist/src/molecule/types.js.map +1 -0
  25. package/dist/src/molecule-3d/index.d.ts.map +1 -0
  26. package/dist/src/molecule-3d/index.js.map +1 -0
  27. package/dist/src/molecule-3d/molecule-3d-build-data.d.ts.map +1 -0
  28. package/dist/src/molecule-3d/molecule-3d-build-data.js.map +1 -0
  29. package/dist/src/molecule-3d/molecule-3d-units-handler.d.ts.map +1 -0
  30. package/dist/src/molecule-3d/molecule-3d-units-handler.js.map +1 -0
  31. package/dist/src/molecule-3d/types.d.ts.map +1 -0
  32. package/dist/src/molecule-3d/types.js.map +1 -0
  33. package/dist/src/monomer-works/consts.d.ts +36 -0
  34. package/dist/src/monomer-works/consts.d.ts.map +1 -0
  35. package/dist/src/monomer-works/consts.js.map +1 -0
  36. package/dist/src/monomer-works/lib-events.d.ts.map +1 -0
  37. package/dist/src/monomer-works/lib-events.js.map +1 -0
  38. package/dist/src/monomer-works/lib-settings.d.ts.map +1 -0
  39. package/dist/src/monomer-works/lib-settings.js.map +1 -0
  40. package/dist/src/monomer-works/monomer-hover.d.ts.map +1 -0
  41. package/dist/src/monomer-works/monomer-hover.js.map +1 -0
  42. package/dist/src/monomer-works/monomer-utils.d.ts.map +1 -0
  43. package/{src → dist/src}/monomer-works/monomer-utils.js +4 -17
  44. package/dist/src/monomer-works/monomer-utils.js.map +1 -0
  45. package/dist/src/monomer-works/monomer-works.d.ts.map +1 -0
  46. package/dist/src/monomer-works/monomer-works.js.map +1 -0
  47. package/dist/src/monomer-works/seq-to-molfile-worker.d.ts.map +1 -0
  48. package/dist/src/monomer-works/seq-to-molfile-worker.js.map +1 -0
  49. package/dist/src/monomer-works/seq-to-molfile.d.ts.map +1 -0
  50. package/dist/src/monomer-works/seq-to-molfile.js.map +1 -0
  51. package/dist/src/monomer-works/to-atomic-level-utils.d.ts.map +1 -0
  52. package/dist/src/monomer-works/to-atomic-level-utils.js.map +1 -0
  53. package/dist/src/monomer-works/to-atomic-level.d.ts.map +1 -0
  54. package/dist/src/monomer-works/to-atomic-level.js.map +1 -0
  55. package/dist/src/monomer-works/types.d.ts.map +1 -0
  56. package/dist/src/monomer-works/types.js.map +1 -0
  57. package/dist/src/monomer-works/utils.d.ts.map +1 -0
  58. package/dist/src/monomer-works/utils.js.map +1 -0
  59. package/dist/src/ntseq/ntseq.js +1349 -0
  60. package/dist/src/nucleotides.d.ts.map +1 -0
  61. package/dist/src/nucleotides.js.map +1 -0
  62. package/dist/src/pdb/auto-dock-service.d.ts.map +1 -0
  63. package/dist/src/pdb/auto-dock-service.js.map +1 -0
  64. package/dist/src/pdb/format/types-base.d.ts.map +1 -0
  65. package/dist/src/pdb/format/types-base.js.map +1 -0
  66. package/dist/src/pdb/format/types-pdb.d.ts.map +1 -0
  67. package/dist/src/pdb/format/types-pdb.js.map +1 -0
  68. package/dist/src/pdb/format/types-pdbqt.d.ts.map +1 -0
  69. package/dist/src/pdb/format/types-pdbqt.js.map +1 -0
  70. package/dist/src/pdb/format/types.d.ts.map +1 -0
  71. package/dist/src/pdb/format/types.js.map +1 -0
  72. package/dist/src/pdb/index.d.ts.map +1 -0
  73. package/dist/src/pdb/index.js.map +1 -0
  74. package/dist/src/pdb/pdb-helper.d.ts.map +1 -0
  75. package/dist/src/pdb/pdb-helper.js.map +1 -0
  76. package/dist/src/pdb/types.d.ts.map +1 -0
  77. package/dist/src/pdb/types.js.map +1 -0
  78. package/dist/src/seq-palettes.d.ts.map +1 -0
  79. package/dist/src/seq-palettes.js.map +1 -0
  80. package/dist/src/sequence-encoder.d.ts.map +1 -0
  81. package/dist/src/sequence-encoder.js.map +1 -0
  82. package/dist/src/substructure-filter/bio-substructure-filter-types.d.ts.map +1 -0
  83. package/dist/src/substructure-filter/bio-substructure-filter-types.js.map +1 -0
  84. package/dist/src/tests/monomer-lib-tests.d.ts.map +1 -0
  85. package/dist/src/tests/monomer-lib-tests.js.map +1 -0
  86. package/dist/src/tests/palettes-tests.d.ts.map +1 -0
  87. package/dist/src/tests/palettes-tests.js.map +1 -0
  88. package/dist/src/trees/consts.d.ts.map +1 -0
  89. package/dist/src/trees/consts.js.map +1 -0
  90. package/dist/src/trees/dendrogram.d.ts.map +1 -0
  91. package/dist/src/trees/dendrogram.js.map +1 -0
  92. package/dist/src/trees/index.d.ts.map +1 -0
  93. package/dist/src/trees/index.js.map +1 -0
  94. package/dist/src/trees/phylocanvas.d.ts.map +1 -0
  95. package/dist/src/trees/phylocanvas.js.map +1 -0
  96. package/dist/src/trees/tree-helper.d.ts.map +1 -0
  97. package/dist/src/trees/tree-helper.js.map +1 -0
  98. package/dist/src/trees/types.d.ts.map +1 -0
  99. package/dist/src/trees/types.js.map +1 -0
  100. package/dist/src/trees/utils.d.ts.map +1 -0
  101. package/dist/src/trees/utils.js.map +1 -0
  102. package/dist/src/types/dojo.d.ts.map +1 -0
  103. package/dist/src/types/dojo.js.map +1 -0
  104. package/dist/src/types/index.d.ts.map +1 -0
  105. package/dist/src/types/index.js.map +1 -0
  106. package/dist/src/types/input.d.ts.map +1 -0
  107. package/dist/src/types/input.js.map +1 -0
  108. package/dist/src/types/monomer-library.d.ts.map +1 -0
  109. package/dist/src/types/monomer-library.js.map +1 -0
  110. package/dist/src/types/ngl.d.ts.map +1 -0
  111. package/dist/src/types/ngl.js.map +1 -0
  112. package/dist/src/types/renderer.d.ts.map +1 -0
  113. package/dist/src/types/renderer.js.map +1 -0
  114. package/dist/src/unknown.d.ts.map +1 -0
  115. package/dist/src/unknown.js.map +1 -0
  116. package/dist/src/utils/annotation-track.d.ts.map +1 -0
  117. package/dist/src/utils/annotation-track.js.map +1 -0
  118. package/dist/src/utils/cell-renderer-annotations.d.ts.map +1 -0
  119. package/dist/src/utils/cell-renderer-annotations.js.map +1 -0
  120. package/dist/src/utils/cell-renderer-async-base.d.ts.map +1 -0
  121. package/dist/src/utils/cell-renderer-async-base.js.map +1 -0
  122. package/dist/src/utils/cell-renderer-back-base.d.ts.map +1 -0
  123. package/dist/src/utils/cell-renderer-back-base.js.map +1 -0
  124. package/dist/src/utils/cell-renderer-consts.d.ts.map +1 -0
  125. package/dist/src/utils/cell-renderer-consts.js +28 -0
  126. package/dist/src/utils/cell-renderer-consts.js.map +1 -0
  127. package/dist/src/utils/cell-renderer-monomer-placer.d.ts.map +1 -0
  128. package/dist/src/utils/cell-renderer-monomer-placer.js.map +1 -0
  129. package/dist/src/utils/cell-renderer.d.ts.map +1 -0
  130. package/dist/src/utils/cell-renderer.js.map +1 -0
  131. package/dist/src/utils/composition-table.d.ts.map +1 -0
  132. package/{src → dist/src}/utils/composition-table.js +3 -1
  133. package/dist/src/utils/composition-table.js.map +1 -0
  134. package/{src → dist/src}/utils/const.d.ts +6 -6
  135. package/dist/src/utils/const.d.ts.map +1 -0
  136. package/dist/src/utils/const.js +97 -0
  137. package/dist/src/utils/const.js.map +1 -0
  138. package/dist/src/utils/data-provider.d.ts.map +1 -0
  139. package/dist/src/utils/data-provider.js.map +1 -0
  140. package/dist/src/utils/docker.d.ts.map +1 -0
  141. package/dist/src/utils/docker.js.map +1 -0
  142. package/dist/src/utils/err-info.d.ts.map +1 -0
  143. package/dist/src/utils/err-info.js.map +1 -0
  144. package/dist/src/utils/fasta-handler.d.ts.map +1 -0
  145. package/dist/src/utils/fasta-handler.js.map +1 -0
  146. package/dist/src/utils/generator.d.ts.map +1 -0
  147. package/dist/src/utils/generator.js.map +1 -0
  148. package/dist/src/utils/logger.d.ts.map +1 -0
  149. package/dist/src/utils/logger.js.map +1 -0
  150. package/dist/src/utils/macromolecule/alignment.d.ts.map +1 -0
  151. package/dist/src/utils/macromolecule/alignment.js.map +1 -0
  152. package/{src → dist/src}/utils/macromolecule/annotations.d.ts +7 -7
  153. package/dist/src/utils/macromolecule/annotations.d.ts.map +1 -0
  154. package/dist/src/utils/macromolecule/annotations.js.map +1 -0
  155. package/dist/src/utils/macromolecule/consts.d.ts.map +1 -0
  156. package/{src → dist/src}/utils/macromolecule/consts.js +5 -0
  157. package/dist/src/utils/macromolecule/consts.js.map +1 -0
  158. package/dist/src/utils/macromolecule/index.d.ts.map +1 -0
  159. package/{src → dist/src}/utils/macromolecule/index.js +1 -1
  160. package/dist/src/utils/macromolecule/index.js.map +1 -0
  161. package/dist/src/utils/macromolecule/monomers.d.ts.map +1 -0
  162. package/dist/src/utils/macromolecule/monomers.js.map +1 -0
  163. package/dist/src/utils/macromolecule/numbering-schemes.d.ts.map +1 -0
  164. package/dist/src/utils/macromolecule/numbering-schemes.js.map +1 -0
  165. package/dist/src/utils/macromolecule/scoring.d.ts.map +1 -0
  166. package/dist/src/utils/macromolecule/scoring.js.map +1 -0
  167. package/dist/src/utils/macromolecule/seq-handler.d.ts.map +1 -0
  168. package/dist/src/utils/macromolecule/seq-handler.js.map +1 -0
  169. package/dist/src/utils/macromolecule/types.d.ts.map +1 -0
  170. package/dist/src/utils/macromolecule/types.js.map +1 -0
  171. package/dist/src/utils/macromolecule/utils.d.ts.map +1 -0
  172. package/dist/src/utils/macromolecule/utils.js.map +1 -0
  173. package/dist/src/utils/macromolecule-highlight.d.ts.map +1 -0
  174. package/dist/src/utils/macromolecule-highlight.js.map +1 -0
  175. package/dist/src/utils/monomer-selection-dialog.d.ts.map +1 -0
  176. package/dist/src/utils/monomer-selection-dialog.js.map +1 -0
  177. package/dist/src/utils/monomer-ui.d.ts.map +1 -0
  178. package/dist/src/utils/monomer-ui.js.map +1 -0
  179. package/dist/src/utils/seq-helper.d.ts.map +1 -0
  180. package/dist/src/utils/seq-helper.js.map +1 -0
  181. package/dist/src/utils/sequence-column-input.d.ts.map +1 -0
  182. package/dist/src/utils/sequence-column-input.js.map +1 -0
  183. package/{src → dist/src}/utils/sequence-position-scroller.d.ts +20 -0
  184. package/dist/src/utils/sequence-position-scroller.d.ts.map +1 -0
  185. package/{src → dist/src}/utils/sequence-position-scroller.js +124 -23
  186. package/dist/src/utils/sequence-position-scroller.js.map +1 -0
  187. package/dist/src/utils/splitter.d.ts.map +1 -0
  188. package/dist/src/utils/splitter.js.map +1 -0
  189. package/dist/src/utils/syncer.d.ts.map +1 -0
  190. package/dist/src/utils/syncer.js.map +1 -0
  191. package/dist/src/utils/units-handler-base.d.ts.map +1 -0
  192. package/dist/src/utils/units-handler-base.js.map +1 -0
  193. package/dist/src/utils.d.ts.map +1 -0
  194. package/dist/src/utils.js.map +1 -0
  195. package/dist/src/viewers/biotrack.d.ts.map +1 -0
  196. package/dist/src/viewers/biotrack.js.map +1 -0
  197. package/dist/src/viewers/helm-service.d.ts.map +1 -0
  198. package/dist/src/viewers/helm-service.js.map +1 -0
  199. package/dist/src/viewers/molecule3d.d.ts.map +1 -0
  200. package/dist/src/viewers/molecule3d.js.map +1 -0
  201. package/dist/src/viewers/molstar-viewer.d.ts.map +1 -0
  202. package/dist/src/viewers/molstar-viewer.js.map +1 -0
  203. package/dist/src/viewers/ngl-gl-service.d.ts.map +1 -0
  204. package/dist/src/viewers/ngl-gl-service.js.map +1 -0
  205. package/dist/src/viewers/ngl-gl-viewer.d.ts.map +1 -0
  206. package/dist/src/viewers/ngl-gl-viewer.js.map +1 -0
  207. package/dist/src/viewers/phylocanvas-gl-viewer.d.ts.map +1 -0
  208. package/dist/src/viewers/phylocanvas-gl-viewer.js.map +1 -0
  209. package/dist/src/viewers/vd-regions.d.ts.map +1 -0
  210. package/dist/src/viewers/vd-regions.js.map +1 -0
  211. package/dist/src/viewers/viewer.d.ts.map +1 -0
  212. package/dist/src/viewers/viewer.js.map +1 -0
  213. package/dist/src/viewers/web-logo.d.ts.map +1 -0
  214. package/dist/src/viewers/web-logo.js.map +1 -0
  215. package/package.json +51 -32
  216. package/tsconfig.json +2 -67
  217. package/src/aminoacids.d.ts.map +0 -1
  218. package/src/aminoacids.js.map +0 -1
  219. package/src/chem/rdkit-module.d.ts.map +0 -1
  220. package/src/chem/rdkit-module.js.map +0 -1
  221. package/src/consts/index.d.ts.map +0 -1
  222. package/src/consts/index.js.map +0 -1
  223. package/src/helm/consts.d.ts.map +0 -1
  224. package/src/helm/consts.js.map +0 -1
  225. package/src/helm/helm-helper.d.ts.map +0 -1
  226. package/src/helm/helm-helper.js.map +0 -1
  227. package/src/helm/types.d.ts.map +0 -1
  228. package/src/helm/types.js.map +0 -1
  229. package/src/helm/utils.d.ts.map +0 -1
  230. package/src/helm/utils.js.map +0 -1
  231. package/src/molecule/molecule-build-data.d.ts.map +0 -1
  232. package/src/molecule/molecule-build-data.js.map +0 -1
  233. package/src/molecule/molecule-units-handler.d.ts.map +0 -1
  234. package/src/molecule/molecule-units-handler.js.map +0 -1
  235. package/src/molecule/types.d.ts.map +0 -1
  236. package/src/molecule/types.js.map +0 -1
  237. package/src/molecule-3d/index.d.ts.map +0 -1
  238. package/src/molecule-3d/index.js.map +0 -1
  239. package/src/molecule-3d/molecule-3d-build-data.d.ts.map +0 -1
  240. package/src/molecule-3d/molecule-3d-build-data.js.map +0 -1
  241. package/src/molecule-3d/molecule-3d-units-handler.d.ts.map +0 -1
  242. package/src/molecule-3d/molecule-3d-units-handler.js.map +0 -1
  243. package/src/molecule-3d/types.d.ts.map +0 -1
  244. package/src/molecule-3d/types.js.map +0 -1
  245. package/src/monomer-works/consts.d.ts +0 -36
  246. package/src/monomer-works/consts.d.ts.map +0 -1
  247. package/src/monomer-works/consts.js.map +0 -1
  248. package/src/monomer-works/lib-events.d.ts.map +0 -1
  249. package/src/monomer-works/lib-events.js.map +0 -1
  250. package/src/monomer-works/lib-settings.d.ts.map +0 -1
  251. package/src/monomer-works/lib-settings.js.map +0 -1
  252. package/src/monomer-works/monomer-hover.d.ts.map +0 -1
  253. package/src/monomer-works/monomer-hover.js.map +0 -1
  254. package/src/monomer-works/monomer-utils.d.ts.map +0 -1
  255. package/src/monomer-works/monomer-utils.js.map +0 -1
  256. package/src/monomer-works/monomer-works.d.ts.map +0 -1
  257. package/src/monomer-works/monomer-works.js.map +0 -1
  258. package/src/monomer-works/seq-to-molfile-worker.d.ts.map +0 -1
  259. package/src/monomer-works/seq-to-molfile-worker.js.map +0 -1
  260. package/src/monomer-works/seq-to-molfile.d.ts.map +0 -1
  261. package/src/monomer-works/seq-to-molfile.js.map +0 -1
  262. package/src/monomer-works/to-atomic-level-utils.d.ts.map +0 -1
  263. package/src/monomer-works/to-atomic-level-utils.js.map +0 -1
  264. package/src/monomer-works/to-atomic-level.d.ts.map +0 -1
  265. package/src/monomer-works/to-atomic-level.js.map +0 -1
  266. package/src/monomer-works/types.d.ts.map +0 -1
  267. package/src/monomer-works/types.js.map +0 -1
  268. package/src/monomer-works/utils.d.ts.map +0 -1
  269. package/src/monomer-works/utils.js.map +0 -1
  270. package/src/nucleotides.d.ts.map +0 -1
  271. package/src/nucleotides.js.map +0 -1
  272. package/src/pdb/auto-dock-service.d.ts.map +0 -1
  273. package/src/pdb/auto-dock-service.js.map +0 -1
  274. package/src/pdb/format/types-base.d.ts.map +0 -1
  275. package/src/pdb/format/types-base.js.map +0 -1
  276. package/src/pdb/format/types-pdb.d.ts.map +0 -1
  277. package/src/pdb/format/types-pdb.js.map +0 -1
  278. package/src/pdb/format/types-pdbqt.d.ts.map +0 -1
  279. package/src/pdb/format/types-pdbqt.js.map +0 -1
  280. package/src/pdb/format/types.d.ts.map +0 -1
  281. package/src/pdb/format/types.js.map +0 -1
  282. package/src/pdb/index.d.ts.map +0 -1
  283. package/src/pdb/index.js.map +0 -1
  284. package/src/pdb/pdb-helper.d.ts.map +0 -1
  285. package/src/pdb/pdb-helper.js.map +0 -1
  286. package/src/pdb/types.d.ts.map +0 -1
  287. package/src/pdb/types.js.map +0 -1
  288. package/src/seq-palettes.d.ts.map +0 -1
  289. package/src/seq-palettes.js.map +0 -1
  290. package/src/sequence-encoder.d.ts.map +0 -1
  291. package/src/sequence-encoder.js.map +0 -1
  292. package/src/substructure-filter/bio-substructure-filter-types.d.ts.map +0 -1
  293. package/src/substructure-filter/bio-substructure-filter-types.js.map +0 -1
  294. package/src/tests/monomer-lib-tests.d.ts.map +0 -1
  295. package/src/tests/monomer-lib-tests.js.map +0 -1
  296. package/src/tests/palettes-tests.d.ts.map +0 -1
  297. package/src/tests/palettes-tests.js.map +0 -1
  298. package/src/trees/consts.d.ts.map +0 -1
  299. package/src/trees/consts.js.map +0 -1
  300. package/src/trees/dendrogram.d.ts.map +0 -1
  301. package/src/trees/dendrogram.js.map +0 -1
  302. package/src/trees/index.d.ts.map +0 -1
  303. package/src/trees/index.js.map +0 -1
  304. package/src/trees/phylocanvas.d.ts.map +0 -1
  305. package/src/trees/phylocanvas.js.map +0 -1
  306. package/src/trees/tree-helper.d.ts.map +0 -1
  307. package/src/trees/tree-helper.js.map +0 -1
  308. package/src/trees/types.d.ts.map +0 -1
  309. package/src/trees/types.js.map +0 -1
  310. package/src/trees/utils.d.ts.map +0 -1
  311. package/src/trees/utils.js.map +0 -1
  312. package/src/types/dojo.d.ts.map +0 -1
  313. package/src/types/dojo.js.map +0 -1
  314. package/src/types/index.d.ts.map +0 -1
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  385. package/src/utils/seq-helper.js.map +0 -1
  386. package/src/utils/sequence-column-input.d.ts.map +0 -1
  387. package/src/utils/sequence-column-input.js.map +0 -1
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  389. package/src/utils/sequence-position-scroller.js.map +0 -1
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  391. package/src/utils/splitter.js.map +0 -1
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  393. package/src/utils/syncer.js.map +0 -1
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  399. package/src/viewers/biotrack.js.map +0 -1
  400. package/src/viewers/helm-service.d.ts.map +0 -1
  401. package/src/viewers/helm-service.js.map +0 -1
  402. package/src/viewers/molecule3d.d.ts.map +0 -1
  403. package/src/viewers/molecule3d.js.map +0 -1
  404. package/src/viewers/molstar-viewer.d.ts.map +0 -1
  405. package/src/viewers/molstar-viewer.js.map +0 -1
  406. package/src/viewers/ngl-gl-service.d.ts.map +0 -1
  407. package/src/viewers/ngl-gl-service.js.map +0 -1
  408. package/src/viewers/ngl-gl-viewer.d.ts.map +0 -1
  409. package/src/viewers/ngl-gl-viewer.js.map +0 -1
  410. package/src/viewers/phylocanvas-gl-viewer.d.ts.map +0 -1
  411. package/src/viewers/phylocanvas-gl-viewer.js.map +0 -1
  412. package/src/viewers/vd-regions.d.ts.map +0 -1
  413. package/src/viewers/vd-regions.js.map +0 -1
  414. package/src/viewers/viewer.d.ts.map +0 -1
  415. package/src/viewers/viewer.js.map +0 -1
  416. package/src/viewers/web-logo.d.ts.map +0 -1
  417. package/src/viewers/web-logo.js.map +0 -1
  418. /package/{src → dist/src}/aminoacids.d.ts +0 -0
  419. /package/{src → dist/src}/aminoacids.js +0 -0
  420. /package/{src → dist/src}/chem/rdkit-module.d.ts +0 -0
  421. /package/{src → dist/src}/chem/rdkit-module.js +0 -0
  422. /package/{src → dist/src}/consts/index.d.ts +0 -0
  423. /package/{src → dist/src}/consts/index.js +0 -0
  424. /package/{src → dist/src}/helm/consts.d.ts +0 -0
  425. /package/{src → dist/src}/helm/consts.js +0 -0
  426. /package/{src → dist/src}/helm/helm-helper.d.ts +0 -0
  427. /package/{src → dist/src}/helm/helm-helper.js +0 -0
  428. /package/{src → dist/src}/helm/types.d.ts +0 -0
  429. /package/{src → dist/src}/helm/types.js +0 -0
  430. /package/{src → dist/src}/helm/utils.d.ts +0 -0
  431. /package/{src → dist/src}/helm/utils.js +0 -0
  432. /package/{src → dist/src}/molecule/molecule-build-data.d.ts +0 -0
  433. /package/{src → dist/src}/molecule/molecule-build-data.js +0 -0
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  435. /package/{src → dist/src}/molecule/molecule-units-handler.js +0 -0
  436. /package/{src → dist/src}/molecule/types.d.ts +0 -0
  437. /package/{src → dist/src}/molecule/types.js +0 -0
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  439. /package/{src → dist/src}/molecule-3d/index.js +0 -0
  440. /package/{src → dist/src}/molecule-3d/molecule-3d-build-data.d.ts +0 -0
  441. /package/{src → dist/src}/molecule-3d/molecule-3d-build-data.js +0 -0
  442. /package/{src → dist/src}/molecule-3d/molecule-3d-units-handler.d.ts +0 -0
  443. /package/{src → dist/src}/molecule-3d/molecule-3d-units-handler.js +0 -0
  444. /package/{src → dist/src}/molecule-3d/types.d.ts +0 -0
  445. /package/{src → dist/src}/molecule-3d/types.js +0 -0
  446. /package/{src → dist/src}/monomer-works/consts.js +0 -0
  447. /package/{src → dist/src}/monomer-works/lib-events.d.ts +0 -0
  448. /package/{src → dist/src}/monomer-works/lib-events.js +0 -0
  449. /package/{src → dist/src}/monomer-works/lib-settings.d.ts +0 -0
  450. /package/{src → dist/src}/monomer-works/lib-settings.js +0 -0
  451. /package/{src → dist/src}/monomer-works/monomer-hover.d.ts +0 -0
  452. /package/{src → dist/src}/monomer-works/monomer-hover.js +0 -0
  453. /package/{src → dist/src}/monomer-works/monomer-utils.d.ts +0 -0
  454. /package/{src → dist/src}/monomer-works/monomer-works.d.ts +0 -0
  455. /package/{src → dist/src}/monomer-works/monomer-works.js +0 -0
  456. /package/{src → dist/src}/monomer-works/seq-to-molfile-worker.d.ts +0 -0
  457. /package/{src → dist/src}/monomer-works/seq-to-molfile-worker.js +0 -0
  458. /package/{src → dist/src}/monomer-works/seq-to-molfile.d.ts +0 -0
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  462. /package/{src → dist/src}/monomer-works/to-atomic-level.d.ts +0 -0
  463. /package/{src → dist/src}/monomer-works/to-atomic-level.js +0 -0
  464. /package/{src → dist/src}/monomer-works/types.d.ts +0 -0
  465. /package/{src → dist/src}/monomer-works/types.js +0 -0
  466. /package/{src → dist/src}/monomer-works/utils.d.ts +0 -0
  467. /package/{src → dist/src}/monomer-works/utils.js +0 -0
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  469. /package/{src → dist/src}/nucleotides.js +0 -0
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  471. /package/{src → dist/src}/pdb/auto-dock-service.js +0 -0
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  473. /package/{src → dist/src}/pdb/format/types-base.js +0 -0
  474. /package/{src → dist/src}/pdb/format/types-pdb.d.ts +0 -0
  475. /package/{src → dist/src}/pdb/format/types-pdb.js +0 -0
  476. /package/{src → dist/src}/pdb/format/types-pdbqt.d.ts +0 -0
  477. /package/{src → dist/src}/pdb/format/types-pdbqt.js +0 -0
  478. /package/{src → dist/src}/pdb/format/types.d.ts +0 -0
  479. /package/{src → dist/src}/pdb/format/types.js +0 -0
  480. /package/{src → dist/src}/pdb/index.d.ts +0 -0
  481. /package/{src → dist/src}/pdb/index.js +0 -0
  482. /package/{src → dist/src}/pdb/pdb-helper.d.ts +0 -0
  483. /package/{src → dist/src}/pdb/pdb-helper.js +0 -0
  484. /package/{src → dist/src}/pdb/types.d.ts +0 -0
  485. /package/{src → dist/src}/pdb/types.js +0 -0
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  487. /package/{src → dist/src}/seq-palettes.js +0 -0
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  489. /package/{src → dist/src}/sequence-encoder.js +0 -0
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  491. /package/{src → dist/src}/substructure-filter/bio-substructure-filter-types.js +0 -0
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  493. /package/{src → dist/src}/tests/monomer-lib-tests.js +0 -0
  494. /package/{src → dist/src}/tests/palettes-tests.d.ts +0 -0
  495. /package/{src → dist/src}/tests/palettes-tests.js +0 -0
  496. /package/{src → dist/src}/trees/consts.d.ts +0 -0
  497. /package/{src → dist/src}/trees/consts.js +0 -0
  498. /package/{src → dist/src}/trees/dendrogram.d.ts +0 -0
  499. /package/{src → dist/src}/trees/dendrogram.js +0 -0
  500. /package/{src → dist/src}/trees/index.d.ts +0 -0
  501. /package/{src → dist/src}/trees/index.js +0 -0
  502. /package/{src → dist/src}/trees/phylocanvas.d.ts +0 -0
  503. /package/{src → dist/src}/trees/phylocanvas.js +0 -0
  504. /package/{src → dist/src}/trees/tree-helper.d.ts +0 -0
  505. /package/{src → dist/src}/trees/tree-helper.js +0 -0
  506. /package/{src → dist/src}/trees/types.d.ts +0 -0
  507. /package/{src → dist/src}/trees/types.js +0 -0
  508. /package/{src → dist/src}/trees/utils.d.ts +0 -0
  509. /package/{src → dist/src}/trees/utils.js +0 -0
  510. /package/{src → dist/src}/types/dojo.d.ts +0 -0
  511. /package/{src → dist/src}/types/dojo.js +0 -0
  512. /package/{src → dist/src}/types/index.d.ts +0 -0
  513. /package/{src → dist/src}/types/index.js +0 -0
  514. /package/{src → dist/src}/types/input.d.ts +0 -0
  515. /package/{src → dist/src}/types/input.js +0 -0
  516. /package/{src → dist/src}/types/monomer-library.d.ts +0 -0
  517. /package/{src → dist/src}/types/monomer-library.js +0 -0
  518. /package/{src → dist/src}/types/ngl.d.ts +0 -0
  519. /package/{src → dist/src}/types/ngl.js +0 -0
  520. /package/{src → dist/src}/types/renderer.d.ts +0 -0
  521. /package/{src → dist/src}/types/renderer.js +0 -0
  522. /package/{src → dist/src}/unknown.d.ts +0 -0
  523. /package/{src → dist/src}/unknown.js +0 -0
  524. /package/{src → dist/src}/utils/annotation-track.d.ts +0 -0
  525. /package/{src → dist/src}/utils/annotation-track.js +0 -0
  526. /package/{src → dist/src}/utils/cell-renderer-annotations.d.ts +0 -0
  527. /package/{src → dist/src}/utils/cell-renderer-annotations.js +0 -0
  528. /package/{src → dist/src}/utils/cell-renderer-async-base.d.ts +0 -0
  529. /package/{src → dist/src}/utils/cell-renderer-async-base.js +0 -0
  530. /package/{src → dist/src}/utils/cell-renderer-back-base.d.ts +0 -0
  531. /package/{src → dist/src}/utils/cell-renderer-back-base.js +0 -0
  532. /package/{src → dist/src}/utils/cell-renderer-consts.d.ts +0 -0
  533. /package/{src → dist/src}/utils/cell-renderer-monomer-placer.d.ts +0 -0
  534. /package/{src → dist/src}/utils/cell-renderer-monomer-placer.js +0 -0
  535. /package/{src → dist/src}/utils/cell-renderer.d.ts +0 -0
  536. /package/{src → dist/src}/utils/cell-renderer.js +0 -0
  537. /package/{src → dist/src}/utils/composition-table.d.ts +0 -0
  538. /package/{src → dist/src}/utils/data-provider.d.ts +0 -0
  539. /package/{src → dist/src}/utils/data-provider.js +0 -0
  540. /package/{src → dist/src}/utils/docker.d.ts +0 -0
  541. /package/{src → dist/src}/utils/docker.js +0 -0
  542. /package/{src → dist/src}/utils/err-info.d.ts +0 -0
  543. /package/{src → dist/src}/utils/err-info.js +0 -0
  544. /package/{src → dist/src}/utils/fasta-handler.d.ts +0 -0
  545. /package/{src → dist/src}/utils/fasta-handler.js +0 -0
  546. /package/{src → dist/src}/utils/generator.d.ts +0 -0
  547. /package/{src → dist/src}/utils/generator.js +0 -0
  548. /package/{src → dist/src}/utils/logger.d.ts +0 -0
  549. /package/{src → dist/src}/utils/logger.js +0 -0
  550. /package/{src → dist/src}/utils/macromolecule/alignment.d.ts +0 -0
  551. /package/{src → dist/src}/utils/macromolecule/alignment.js +0 -0
  552. /package/{src → dist/src}/utils/macromolecule/annotations.js +0 -0
  553. /package/{src → dist/src}/utils/macromolecule/consts.d.ts +0 -0
  554. /package/{src → dist/src}/utils/macromolecule/index.d.ts +0 -0
  555. /package/{src → dist/src}/utils/macromolecule/monomers.d.ts +0 -0
  556. /package/{src → dist/src}/utils/macromolecule/monomers.js +0 -0
  557. /package/{src → dist/src}/utils/macromolecule/numbering-schemes.d.ts +0 -0
  558. /package/{src → dist/src}/utils/macromolecule/numbering-schemes.js +0 -0
  559. /package/{src → dist/src}/utils/macromolecule/scoring.d.ts +0 -0
  560. /package/{src → dist/src}/utils/macromolecule/scoring.js +0 -0
  561. /package/{src → dist/src}/utils/macromolecule/seq-handler.d.ts +0 -0
  562. /package/{src → dist/src}/utils/macromolecule/seq-handler.js +0 -0
  563. /package/{src → dist/src}/utils/macromolecule/types.d.ts +0 -0
  564. /package/{src → dist/src}/utils/macromolecule/types.js +0 -0
  565. /package/{src → dist/src}/utils/macromolecule/utils.d.ts +0 -0
  566. /package/{src → dist/src}/utils/macromolecule/utils.js +0 -0
  567. /package/{src → dist/src}/utils/macromolecule-highlight.d.ts +0 -0
  568. /package/{src → dist/src}/utils/macromolecule-highlight.js +0 -0
  569. /package/{src → dist/src}/utils/monomer-selection-dialog.d.ts +0 -0
  570. /package/{src → dist/src}/utils/monomer-selection-dialog.js +0 -0
  571. /package/{src → dist/src}/utils/monomer-ui.d.ts +0 -0
  572. /package/{src → dist/src}/utils/monomer-ui.js +0 -0
  573. /package/{src → dist/src}/utils/seq-helper.d.ts +0 -0
  574. /package/{src → dist/src}/utils/seq-helper.js +0 -0
  575. /package/{src → dist/src}/utils/sequence-column-input.d.ts +0 -0
  576. /package/{src → dist/src}/utils/sequence-column-input.js +0 -0
  577. /package/{src → dist/src}/utils/splitter.d.ts +0 -0
  578. /package/{src → dist/src}/utils/splitter.js +0 -0
  579. /package/{src → dist/src}/utils/syncer.d.ts +0 -0
  580. /package/{src → dist/src}/utils/syncer.js +0 -0
  581. /package/{src → dist/src}/utils/units-handler-base.d.ts +0 -0
  582. /package/{src → dist/src}/utils/units-handler-base.js +0 -0
  583. /package/{src → dist/src}/utils.d.ts +0 -0
  584. /package/{src → dist/src}/utils.js +0 -0
  585. /package/{src → dist/src}/viewers/biotrack.d.ts +0 -0
  586. /package/{src → dist/src}/viewers/biotrack.js +0 -0
  587. /package/{src → dist/src}/viewers/helm-service.d.ts +0 -0
  588. /package/{src → dist/src}/viewers/helm-service.js +0 -0
  589. /package/{src → dist/src}/viewers/molecule3d.d.ts +0 -0
  590. /package/{src → dist/src}/viewers/molecule3d.js +0 -0
  591. /package/{src → dist/src}/viewers/molstar-viewer.d.ts +0 -0
  592. /package/{src → dist/src}/viewers/molstar-viewer.js +0 -0
  593. /package/{src → dist/src}/viewers/ngl-gl-service.d.ts +0 -0
  594. /package/{src → dist/src}/viewers/ngl-gl-service.js +0 -0
  595. /package/{src → dist/src}/viewers/ngl-gl-viewer.d.ts +0 -0
  596. /package/{src → dist/src}/viewers/ngl-gl-viewer.js +0 -0
  597. /package/{src → dist/src}/viewers/phylocanvas-gl-viewer.d.ts +0 -0
  598. /package/{src → dist/src}/viewers/phylocanvas-gl-viewer.js +0 -0
  599. /package/{src → dist/src}/viewers/vd-regions.d.ts +0 -0
  600. /package/{src → dist/src}/viewers/vd-regions.js +0 -0
  601. /package/{src → dist/src}/viewers/viewer.d.ts +0 -0
  602. /package/{src → dist/src}/viewers/viewer.js +0 -0
  603. /package/{src → dist/src}/viewers/web-logo.d.ts +0 -0
  604. /package/{src → dist/src}/viewers/web-logo.js +0 -0
package/dist/src/utils/sequence-position-scroller.js.map ADDED
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package/package.json CHANGED
@@ -12,52 +12,71 @@
12
12
  "access": "public"
13
13
  },
14
14
  "friendlyName": "Datagrok bio library",
15
- "version": "6.0.4",
15
+ "version": "6.0.7",
16
16
  "description": "Bio utilities, types supporting Macromolecule, Molecule3D data",
17
17
  "dependencies": {
18
- "@datagrok-libraries/chem-meta": "^1.2.7",
19
- "@datagrok-libraries/gridext": "^1.4.0",
20
- "@datagrok-libraries/hwe": "^1.0.0",
21
- "@datagrok-libraries/ml": "^6.10.16",
22
- "@datagrok-libraries/utils": "^4.5.7",
18
+ "@datagrok-libraries/hwe": "^1.0.5",
23
19
  "@deck.gl/core": "8.8.12",
24
- "cash-dom": "^8.1.5",
25
- "datagrok-api": "^1.26.0",
26
- "dayjs": "^1.11.13",
20
+ "cash-dom": "8.1.5",
21
+ "dayjs": "1.11.23",
27
22
  "fastest-levenshtein": "^1.0.16",
28
23
  "js-base64": "^3.7.5",
29
24
  "lru-cache": "^10.4.3",
30
25
  "mjolnir.js": "^2.7.0",
31
- "rxjs": "^6.5.5",
26
+ "rxjs": "6.6.7",
32
27
  "uuid": "^11.1.1",
33
- "wu": "^2.1.0"
28
+ "wu": "2.1.0",
29
+ "@datagrok-libraries/chem-meta": "^1.2.12",
30
+ "@datagrok-libraries/ml": "^6.11.0",
31
+ "@datagrok-libraries/gridext": "^1.5.4",
32
+ "@datagrok-libraries/utils": "^4.7.9",
33
+ "datagrok-api": "^1.27.11"
34
34
  },
35
35
  "devDependencies": {
36
36
  "@types/signals": "1.0.1",
37
37
  "@types/three": "^0.159.0",
38
38
  "@types/uuid": "^9.0.1",
39
39
  "@types/wu": "^2.1.44",
40
- "@typescript-eslint/eslint-plugin": "^8.8.1",
41
- "@typescript-eslint/parser": "^8.8.1",
42
- "datagrok-tools": "^6.3.3",
43
- "eslint": "8.57.1",
44
- "eslint-config-google": "^0.14.0",
45
- "eslint-plugin-deprecation": "^3.0.0",
46
- "ts-loader": "^9.5.1",
47
- "typescript": "^5.6.3"
40
+ "eslint-plugin-deprecation": "^3.0.0"
48
41
  },
49
- "scripts": {
50
- "link": "npm link",
51
- "link-api": "npm link datagrok-api",
52
- "link-utils": "npm link @datagrok-libraries/utils",
53
- "link-all": "npm link @datagrok-libraries/chem-meta datagrok-api @datagrok-libraries/gridext @datagrok-libraries/utils @datagrok-libraries/ml",
54
- "build-bio": "git clean -f -X -d ./src && tsc",
55
- "build": "grok check --soft && tsc",
56
- "build-all": "npm --prefix ./../../libraries/chem-meta run build && npm --prefix ./../../js-api run build && npm --prefix ./../../libraries/gridext run build && npm --prefix ./../../libraries/utils run build && npm --prefix ./../../libraries/ml run build && npm run build",
57
- "lint": "eslint \"./src/**/*.ts\"",
58
- "lint-fix": "eslint \"./src/**/*.ts\" --fix"
42
+ "exports": {
43
+ "./package.json": "./package.json",
44
+ "./css/*": "./css/*",
45
+ "./src/consts": {
46
+ "types": "./dist/src/consts/index.d.ts",
47
+ "default": "./dist/src/consts/index.js"
48
+ },
49
+ "./src/molecule-3d": {
50
+ "types": "./dist/src/molecule-3d/index.d.ts",
51
+ "default": "./dist/src/molecule-3d/index.js"
52
+ },
53
+ "./src/pdb": {
54
+ "types": "./dist/src/pdb/index.d.ts",
55
+ "default": "./dist/src/pdb/index.js"
56
+ },
57
+ "./src/trees": {
58
+ "types": "./dist/src/trees/index.d.ts",
59
+ "default": "./dist/src/trees/index.js"
60
+ },
61
+ "./src/types": {
62
+ "types": "./dist/src/types/index.d.ts",
63
+ "default": "./dist/src/types/index.js"
64
+ },
65
+ "./src/utils/macromolecule": {
66
+ "types": "./dist/src/utils/macromolecule/index.d.ts",
67
+ "default": "./dist/src/utils/macromolecule/index.js"
68
+ },
69
+ "./*.js": {
70
+ "types": "./dist/*.d.ts",
71
+ "default": "./dist/*.js"
72
+ },
73
+ "./*": {
74
+ "types": "./dist/*.d.ts",
75
+ "default": "./dist/*.js"
76
+ }
59
77
  },
60
- "overrides": {
61
- "uuid": "^11.1.1"
78
+ "scripts": {
79
+ "build": "grok tsc -p tsconfig.json",
80
+ "lint": "eslint --ext .ts,.tsx src"
62
81
  }
63
- }
82
+ }
package/tsconfig.json CHANGED
@@ -1,71 +1,6 @@
1
1
  {
2
+ "extends": "@datagrok/build-config/tsconfig.lib.json",
2
3
  "compilerOptions": {
3
- /* Visit https://aka.ms/tsconfig.json to read more about this file */
4
-
5
- /* Basic Options */
6
- // "incremental": true, /* Enable incremental compilation */
7
- "target": "es2020", /* Specify ECMAScript target version: 'ES3' (default), 'ES5', 'ES2015', 'ES2016', 'ES2017', 'ES2018', 'ES2019', 'ES2020', or 'ESNEXT'. */
8
- "module": "es2020", /* Specify module code generation: 'none', 'commonjs', 'amd', 'system', 'umd', 'es2015', 'es2020', or 'ESNext'. */
9
- "lib": ["ES2022", "dom"], /* Specify library files to be included in the compilation. */
10
- // "allowJs": true, /* Allow javascript files to be compiled. */
11
- // "checkJs": true, /* Report errors in .js files. */
12
- // "jsx": "preserve", /* Specify JSX code generation: 'preserve', 'react-native', 'react', 'react-jsx' or 'react-jsxdev'. */
13
- "declaration": true, /* Generates corresponding '.d.ts' file. */
14
- "declarationMap": true, /* Generates a sourcemap for each corresponding '.d.ts' file. */
15
- "sourceMap": true, /* Generates corresponding '.map' file. */
16
- // "outFile": "./", /* Concatenate and emit output to single file. */
17
- // "outDir": "./", /* Redirect output structure to the directory. */
18
- // "rootDir": "./", /* Specify the root directory of input files. Use to control the output directory structure with --outDir. */
19
- // "composite": true, /* Enable project compilation */
20
- // "tsBuildInfoFile": "./", /* Specify file to store incremental compilation information */
21
- // "removeComments": true, /* Do not emit comments to output. */
22
- // "noEmit": true, /* Do not emit outputs. */
23
- // "importHelpers": true, /* Import emit helpers from 'tslib'. */
24
- // "downlevelIteration": true, /* Provide full support for iterables in 'for-of', spread, and destructuring when targeting 'ES5' or 'ES3'. */
25
- // "isolatedModules": true, /* Transpile each file as a separate module (similar to 'ts.transpileModule'). */
26
-
27
- /* Strict Type-Checking Options */
28
- "strict": true, /* Enable all strict type-checking options. */
29
- // "noImplicitAny": true, /* Raise error on expressions and declarations with an implied 'any' type. */
30
- // "strictNullChecks": true, /* Enable strict null checks. */
31
- // "strictFunctionTypes": true, /* Enable strict checking of function types. */
32
- // "strictBindCallApply": true, /* Enable strict 'bind', 'call', and 'apply' methods on functions. */
33
- "strictPropertyInitialization": false, /* Enable strict checking of property initialization in classes. */
34
- // "noImplicitThis": true, /* Raise error on 'this' expressions with an implied 'any' type. */
35
- // "alwaysStrict": true, /* Parse in strict mode and emit "use strict" for each source file. */
36
-
37
- /* Additional Checks */
38
- // "noUnusedLocals": true, /* Report errors on unused locals. */
39
- // "noUnusedParameters": true, /* Report errors on unused parameters. */
40
- // "noImplicitReturns": true, /* Report error when not all code paths in function return a value. */
41
- // "noFallthroughCasesInSwitch": true, /* Report errors for fallthrough cases in switch statement. */
42
- // "noUncheckedIndexedAccess": true, /* Include 'undefined' in index signature results */
43
- // "noPropertyAccessFromIndexSignature": true, /* Require undeclared properties from index signatures to use element accesses. */
44
-
45
- /* Module Resolution Options */
46
- "moduleResolution": "node", /* Specify module resolution strategy: 'node' (Node.js) or 'classic' (TypeScript pre-1.6). */
47
- // "baseUrl": "./", /* Base directory to resolve non-absolute module names. */
48
- // "paths": {}, /* A series of entries which re-map imports to lookup locations relative to the 'baseUrl'. */
49
- // "rootDirs": [], /* List of root folders whose combined content represents the structure of the project at runtime. */
50
- // "typeRoots": [], /* List of folders to include type definitions from. */
51
- // "types": [], /* Type declaration files to be included in compilation. */
52
- // "allowSyntheticDefaultImports": true, /* Allow default imports from modules with no default export. This does not affect code emit, just typechecking. */
53
- "esModuleInterop": true, /* Enables emit interoperability between CommonJS and ES Modules via creation of namespace objects for all imports. Implies 'allowSyntheticDefaultImports'. */
54
- // "preserveSymlinks": true, /* Do not resolve the real path of symlinks. */
55
- // "allowUmdGlobalAccess": true, /* Allow accessing UMD globals from modules. */
56
-
57
- /* Source Map Options */
58
- "sourceRoot": "", /* Specify the location where debugger should locate TypeScript files instead of source locations. */
59
- "mapRoot": "", /* Specify the location where debugger should locate map files instead of generated locations. */
60
- // "inlineSourceMap": true, /* Emit a single file with source maps instead of having a separate file. */
61
- // "inlineSources": true, /* Emit the source alongside the sourcemaps within a single file; requires '--inlineSourceMap' or '--sourceMap' to be set. */
62
-
63
- /* Experimental Options */
64
- // "experimentalDecorators": true, /* Enables experimental support for ES7 decorators. */
65
- // "emitDecoratorMetadata": true, /* Enables experimental support for emitting type metadata for decorators. */
66
-
67
- /* Advanced Options */
68
- "skipLibCheck": true, /* Skip type checking of declaration files. */
69
- "forceConsistentCasingInFileNames": true /* Disallow inconsistently-cased references to the same file. */
4
+ "strictPropertyInitialization": false
70
5
  }
71
6
  }
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