@datagrok-libraries/bio 6.0.4 → 6.0.6
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/.turbo/turbo-build.log +5 -0
- package/CLAUDE.md +1 -1
- package/LICENSE.md +16 -0
- package/cleanup +0 -0
- package/dist/src/aminoacids.d.ts.map +1 -0
- package/dist/src/aminoacids.js.map +1 -0
- package/dist/src/chem/rdkit-module.d.ts.map +1 -0
- package/dist/src/chem/rdkit-module.js.map +1 -0
- package/dist/src/consts/index.d.ts.map +1 -0
- package/dist/src/consts/index.js.map +1 -0
- package/dist/src/helm/consts.d.ts.map +1 -0
- package/dist/src/helm/consts.js.map +1 -0
- package/dist/src/helm/helm-helper.d.ts.map +1 -0
- package/dist/src/helm/helm-helper.js.map +1 -0
- package/dist/src/helm/types.d.ts.map +1 -0
- package/dist/src/helm/types.js.map +1 -0
- package/dist/src/helm/utils.d.ts.map +1 -0
- package/dist/src/helm/utils.js.map +1 -0
- package/dist/src/molecule/molecule-build-data.d.ts.map +1 -0
- package/dist/src/molecule/molecule-build-data.js.map +1 -0
- package/dist/src/molecule/molecule-units-handler.d.ts.map +1 -0
- package/dist/src/molecule/molecule-units-handler.js.map +1 -0
- package/dist/src/molecule/types.d.ts.map +1 -0
- package/dist/src/molecule/types.js.map +1 -0
- package/dist/src/molecule-3d/index.d.ts.map +1 -0
- package/dist/src/molecule-3d/index.js.map +1 -0
- package/dist/src/molecule-3d/molecule-3d-build-data.d.ts.map +1 -0
- package/dist/src/molecule-3d/molecule-3d-build-data.js.map +1 -0
- package/dist/src/molecule-3d/molecule-3d-units-handler.d.ts.map +1 -0
- package/dist/src/molecule-3d/molecule-3d-units-handler.js.map +1 -0
- package/dist/src/molecule-3d/types.d.ts.map +1 -0
- package/dist/src/molecule-3d/types.js.map +1 -0
- package/dist/src/monomer-works/consts.d.ts +36 -0
- package/dist/src/monomer-works/consts.d.ts.map +1 -0
- package/dist/src/monomer-works/consts.js.map +1 -0
- package/dist/src/monomer-works/lib-events.d.ts.map +1 -0
- package/dist/src/monomer-works/lib-events.js.map +1 -0
- package/dist/src/monomer-works/lib-settings.d.ts.map +1 -0
- package/dist/src/monomer-works/lib-settings.js.map +1 -0
- package/dist/src/monomer-works/monomer-hover.d.ts.map +1 -0
- package/dist/src/monomer-works/monomer-hover.js.map +1 -0
- package/dist/src/monomer-works/monomer-utils.d.ts.map +1 -0
- package/{src → dist/src}/monomer-works/monomer-utils.js +4 -17
- package/dist/src/monomer-works/monomer-utils.js.map +1 -0
- package/dist/src/monomer-works/monomer-works.d.ts.map +1 -0
- package/dist/src/monomer-works/monomer-works.js.map +1 -0
- package/dist/src/monomer-works/seq-to-molfile-worker.d.ts.map +1 -0
- package/dist/src/monomer-works/seq-to-molfile-worker.js.map +1 -0
- package/dist/src/monomer-works/seq-to-molfile.d.ts.map +1 -0
- package/dist/src/monomer-works/seq-to-molfile.js.map +1 -0
- package/dist/src/monomer-works/to-atomic-level-utils.d.ts.map +1 -0
- package/dist/src/monomer-works/to-atomic-level-utils.js.map +1 -0
- package/dist/src/monomer-works/to-atomic-level.d.ts.map +1 -0
- package/dist/src/monomer-works/to-atomic-level.js.map +1 -0
- package/dist/src/monomer-works/types.d.ts.map +1 -0
- package/dist/src/monomer-works/types.js.map +1 -0
- package/dist/src/monomer-works/utils.d.ts.map +1 -0
- package/dist/src/monomer-works/utils.js.map +1 -0
- package/dist/src/ntseq/ntseq.js +1349 -0
- package/dist/src/nucleotides.d.ts.map +1 -0
- package/dist/src/nucleotides.js.map +1 -0
- package/dist/src/pdb/auto-dock-service.d.ts.map +1 -0
- package/dist/src/pdb/auto-dock-service.js.map +1 -0
- package/dist/src/pdb/format/types-base.d.ts.map +1 -0
- package/dist/src/pdb/format/types-base.js.map +1 -0
- package/dist/src/pdb/format/types-pdb.d.ts.map +1 -0
- package/dist/src/pdb/format/types-pdb.js.map +1 -0
- package/dist/src/pdb/format/types-pdbqt.d.ts.map +1 -0
- package/dist/src/pdb/format/types-pdbqt.js.map +1 -0
- package/dist/src/pdb/format/types.d.ts.map +1 -0
- package/dist/src/pdb/format/types.js.map +1 -0
- package/dist/src/pdb/index.d.ts.map +1 -0
- package/dist/src/pdb/index.js.map +1 -0
- package/dist/src/pdb/pdb-helper.d.ts.map +1 -0
- package/dist/src/pdb/pdb-helper.js.map +1 -0
- package/dist/src/pdb/types.d.ts.map +1 -0
- package/dist/src/pdb/types.js.map +1 -0
- package/dist/src/seq-palettes.d.ts.map +1 -0
- package/dist/src/seq-palettes.js.map +1 -0
- package/dist/src/sequence-encoder.d.ts.map +1 -0
- package/dist/src/sequence-encoder.js.map +1 -0
- package/dist/src/substructure-filter/bio-substructure-filter-types.d.ts.map +1 -0
- package/dist/src/substructure-filter/bio-substructure-filter-types.js.map +1 -0
- package/dist/src/tests/monomer-lib-tests.d.ts.map +1 -0
- package/dist/src/tests/monomer-lib-tests.js.map +1 -0
- package/dist/src/tests/palettes-tests.d.ts.map +1 -0
- package/dist/src/tests/palettes-tests.js.map +1 -0
- package/dist/src/trees/consts.d.ts.map +1 -0
- package/dist/src/trees/consts.js.map +1 -0
- package/dist/src/trees/dendrogram.d.ts.map +1 -0
- package/dist/src/trees/dendrogram.js.map +1 -0
- package/dist/src/trees/index.d.ts.map +1 -0
- package/dist/src/trees/index.js.map +1 -0
- package/dist/src/trees/phylocanvas.d.ts.map +1 -0
- package/dist/src/trees/phylocanvas.js.map +1 -0
- package/dist/src/trees/tree-helper.d.ts.map +1 -0
- package/dist/src/trees/tree-helper.js.map +1 -0
- package/dist/src/trees/types.d.ts.map +1 -0
- package/dist/src/trees/types.js.map +1 -0
- package/dist/src/trees/utils.d.ts.map +1 -0
- package/dist/src/trees/utils.js.map +1 -0
- package/dist/src/types/dojo.d.ts.map +1 -0
- package/dist/src/types/dojo.js.map +1 -0
- package/dist/src/types/index.d.ts.map +1 -0
- package/dist/src/types/index.js.map +1 -0
- package/dist/src/types/input.d.ts.map +1 -0
- package/dist/src/types/input.js.map +1 -0
- package/dist/src/types/monomer-library.d.ts.map +1 -0
- package/dist/src/types/monomer-library.js.map +1 -0
- package/dist/src/types/ngl.d.ts.map +1 -0
- package/dist/src/types/ngl.js.map +1 -0
- package/dist/src/types/renderer.d.ts.map +1 -0
- package/dist/src/types/renderer.js.map +1 -0
- package/dist/src/unknown.d.ts.map +1 -0
- package/dist/src/unknown.js.map +1 -0
- package/dist/src/utils/annotation-track.d.ts.map +1 -0
- package/dist/src/utils/annotation-track.js.map +1 -0
- package/dist/src/utils/cell-renderer-annotations.d.ts.map +1 -0
- package/dist/src/utils/cell-renderer-annotations.js.map +1 -0
- package/dist/src/utils/cell-renderer-async-base.d.ts.map +1 -0
- package/dist/src/utils/cell-renderer-async-base.js.map +1 -0
- package/dist/src/utils/cell-renderer-back-base.d.ts.map +1 -0
- package/dist/src/utils/cell-renderer-back-base.js.map +1 -0
- package/dist/src/utils/cell-renderer-consts.d.ts.map +1 -0
- package/dist/src/utils/cell-renderer-consts.js +28 -0
- package/dist/src/utils/cell-renderer-consts.js.map +1 -0
- package/dist/src/utils/cell-renderer-monomer-placer.d.ts.map +1 -0
- package/dist/src/utils/cell-renderer-monomer-placer.js.map +1 -0
- package/dist/src/utils/cell-renderer.d.ts.map +1 -0
- package/dist/src/utils/cell-renderer.js.map +1 -0
- package/dist/src/utils/composition-table.d.ts.map +1 -0
- package/dist/src/utils/composition-table.js.map +1 -0
- package/{src → dist/src}/utils/const.d.ts +6 -6
- package/dist/src/utils/const.d.ts.map +1 -0
- package/dist/src/utils/const.js +97 -0
- package/dist/src/utils/const.js.map +1 -0
- package/dist/src/utils/data-provider.d.ts.map +1 -0
- package/dist/src/utils/data-provider.js.map +1 -0
- package/dist/src/utils/docker.d.ts.map +1 -0
- package/dist/src/utils/docker.js.map +1 -0
- package/dist/src/utils/err-info.d.ts.map +1 -0
- package/dist/src/utils/err-info.js.map +1 -0
- package/dist/src/utils/fasta-handler.d.ts.map +1 -0
- package/dist/src/utils/fasta-handler.js.map +1 -0
- package/dist/src/utils/generator.d.ts.map +1 -0
- package/dist/src/utils/generator.js.map +1 -0
- package/dist/src/utils/logger.d.ts.map +1 -0
- package/dist/src/utils/logger.js.map +1 -0
- package/dist/src/utils/macromolecule/alignment.d.ts.map +1 -0
- package/dist/src/utils/macromolecule/alignment.js.map +1 -0
- package/{src → dist/src}/utils/macromolecule/annotations.d.ts +7 -7
- package/dist/src/utils/macromolecule/annotations.d.ts.map +1 -0
- package/dist/src/utils/macromolecule/annotations.js.map +1 -0
- package/dist/src/utils/macromolecule/consts.d.ts.map +1 -0
- package/{src → dist/src}/utils/macromolecule/consts.js +5 -0
- package/dist/src/utils/macromolecule/consts.js.map +1 -0
- package/dist/src/utils/macromolecule/index.d.ts.map +1 -0
- package/{src → dist/src}/utils/macromolecule/index.js +1 -1
- package/dist/src/utils/macromolecule/index.js.map +1 -0
- package/dist/src/utils/macromolecule/monomers.d.ts.map +1 -0
- package/dist/src/utils/macromolecule/monomers.js.map +1 -0
- package/dist/src/utils/macromolecule/numbering-schemes.d.ts.map +1 -0
- package/dist/src/utils/macromolecule/numbering-schemes.js.map +1 -0
- package/dist/src/utils/macromolecule/scoring.d.ts.map +1 -0
- package/dist/src/utils/macromolecule/scoring.js.map +1 -0
- package/dist/src/utils/macromolecule/seq-handler.d.ts.map +1 -0
- package/dist/src/utils/macromolecule/seq-handler.js.map +1 -0
- package/dist/src/utils/macromolecule/types.d.ts.map +1 -0
- package/dist/src/utils/macromolecule/types.js.map +1 -0
- package/dist/src/utils/macromolecule/utils.d.ts.map +1 -0
- package/dist/src/utils/macromolecule/utils.js.map +1 -0
- package/dist/src/utils/macromolecule-highlight.d.ts.map +1 -0
- package/dist/src/utils/macromolecule-highlight.js.map +1 -0
- package/dist/src/utils/monomer-selection-dialog.d.ts.map +1 -0
- package/dist/src/utils/monomer-selection-dialog.js.map +1 -0
- package/dist/src/utils/monomer-ui.d.ts.map +1 -0
- package/dist/src/utils/monomer-ui.js.map +1 -0
- package/dist/src/utils/seq-helper.d.ts.map +1 -0
- package/dist/src/utils/seq-helper.js.map +1 -0
- package/dist/src/utils/sequence-column-input.d.ts.map +1 -0
- package/dist/src/utils/sequence-column-input.js.map +1 -0
- package/{src → dist/src}/utils/sequence-position-scroller.d.ts +20 -0
- package/dist/src/utils/sequence-position-scroller.d.ts.map +1 -0
- package/{src → dist/src}/utils/sequence-position-scroller.js +124 -23
- package/dist/src/utils/sequence-position-scroller.js.map +1 -0
- package/dist/src/utils/splitter.d.ts.map +1 -0
- package/dist/src/utils/splitter.js.map +1 -0
- package/dist/src/utils/syncer.d.ts.map +1 -0
- package/dist/src/utils/syncer.js.map +1 -0
- package/dist/src/utils/units-handler-base.d.ts.map +1 -0
- package/dist/src/utils/units-handler-base.js.map +1 -0
- package/dist/src/utils.d.ts.map +1 -0
- package/dist/src/utils.js.map +1 -0
- package/dist/src/viewers/biotrack.d.ts.map +1 -0
- package/dist/src/viewers/biotrack.js.map +1 -0
- package/dist/src/viewers/helm-service.d.ts.map +1 -0
- package/dist/src/viewers/helm-service.js.map +1 -0
- package/dist/src/viewers/molecule3d.d.ts.map +1 -0
- package/dist/src/viewers/molecule3d.js.map +1 -0
- package/dist/src/viewers/molstar-viewer.d.ts.map +1 -0
- package/dist/src/viewers/molstar-viewer.js.map +1 -0
- package/dist/src/viewers/ngl-gl-service.d.ts.map +1 -0
- package/dist/src/viewers/ngl-gl-service.js.map +1 -0
- package/dist/src/viewers/ngl-gl-viewer.d.ts.map +1 -0
- package/dist/src/viewers/ngl-gl-viewer.js.map +1 -0
- package/dist/src/viewers/phylocanvas-gl-viewer.d.ts.map +1 -0
- package/dist/src/viewers/phylocanvas-gl-viewer.js.map +1 -0
- package/dist/src/viewers/vd-regions.d.ts.map +1 -0
- package/dist/src/viewers/vd-regions.js.map +1 -0
- package/dist/src/viewers/viewer.d.ts.map +1 -0
- package/dist/src/viewers/viewer.js.map +1 -0
- package/dist/src/viewers/web-logo.d.ts.map +1 -0
- package/dist/src/viewers/web-logo.js.map +1 -0
- package/package.json +51 -32
- package/tsconfig.json +2 -67
- package/src/aminoacids.d.ts.map +0 -1
- package/src/aminoacids.js.map +0 -1
- package/src/chem/rdkit-module.d.ts.map +0 -1
- package/src/chem/rdkit-module.js.map +0 -1
- package/src/consts/index.d.ts.map +0 -1
- package/src/consts/index.js.map +0 -1
- package/src/helm/consts.d.ts.map +0 -1
- package/src/helm/consts.js.map +0 -1
- package/src/helm/helm-helper.d.ts.map +0 -1
- package/src/helm/helm-helper.js.map +0 -1
- package/src/helm/types.d.ts.map +0 -1
- package/src/helm/types.js.map +0 -1
- package/src/helm/utils.d.ts.map +0 -1
- package/src/helm/utils.js.map +0 -1
- package/src/molecule/molecule-build-data.d.ts.map +0 -1
- package/src/molecule/molecule-build-data.js.map +0 -1
- package/src/molecule/molecule-units-handler.d.ts.map +0 -1
- package/src/molecule/molecule-units-handler.js.map +0 -1
- package/src/molecule/types.d.ts.map +0 -1
- package/src/molecule/types.js.map +0 -1
- package/src/molecule-3d/index.d.ts.map +0 -1
- package/src/molecule-3d/index.js.map +0 -1
- package/src/molecule-3d/molecule-3d-build-data.d.ts.map +0 -1
- package/src/molecule-3d/molecule-3d-build-data.js.map +0 -1
- package/src/molecule-3d/molecule-3d-units-handler.d.ts.map +0 -1
- package/src/molecule-3d/molecule-3d-units-handler.js.map +0 -1
- package/src/molecule-3d/types.d.ts.map +0 -1
- package/src/molecule-3d/types.js.map +0 -1
- package/src/monomer-works/consts.d.ts +0 -36
- package/src/monomer-works/consts.d.ts.map +0 -1
- package/src/monomer-works/consts.js.map +0 -1
- package/src/monomer-works/lib-events.d.ts.map +0 -1
- package/src/monomer-works/lib-events.js.map +0 -1
- package/src/monomer-works/lib-settings.d.ts.map +0 -1
- package/src/monomer-works/lib-settings.js.map +0 -1
- package/src/monomer-works/monomer-hover.d.ts.map +0 -1
- package/src/monomer-works/monomer-hover.js.map +0 -1
- package/src/monomer-works/monomer-utils.d.ts.map +0 -1
- package/src/monomer-works/monomer-utils.js.map +0 -1
- package/src/monomer-works/monomer-works.d.ts.map +0 -1
- package/src/monomer-works/monomer-works.js.map +0 -1
- package/src/monomer-works/seq-to-molfile-worker.d.ts.map +0 -1
- package/src/monomer-works/seq-to-molfile-worker.js.map +0 -1
- package/src/monomer-works/seq-to-molfile.d.ts.map +0 -1
- package/src/monomer-works/seq-to-molfile.js.map +0 -1
- package/src/monomer-works/to-atomic-level-utils.d.ts.map +0 -1
- package/src/monomer-works/to-atomic-level-utils.js.map +0 -1
- package/src/monomer-works/to-atomic-level.d.ts.map +0 -1
- package/src/monomer-works/to-atomic-level.js.map +0 -1
- package/src/monomer-works/types.d.ts.map +0 -1
- package/src/monomer-works/types.js.map +0 -1
- package/src/monomer-works/utils.d.ts.map +0 -1
- package/src/monomer-works/utils.js.map +0 -1
- package/src/nucleotides.d.ts.map +0 -1
- package/src/nucleotides.js.map +0 -1
- package/src/pdb/auto-dock-service.d.ts.map +0 -1
- package/src/pdb/auto-dock-service.js.map +0 -1
- package/src/pdb/format/types-base.d.ts.map +0 -1
- package/src/pdb/format/types-base.js.map +0 -1
- package/src/pdb/format/types-pdb.d.ts.map +0 -1
- package/src/pdb/format/types-pdb.js.map +0 -1
- package/src/pdb/format/types-pdbqt.d.ts.map +0 -1
- package/src/pdb/format/types-pdbqt.js.map +0 -1
- package/src/pdb/format/types.d.ts.map +0 -1
- package/src/pdb/format/types.js.map +0 -1
- package/src/pdb/index.d.ts.map +0 -1
- package/src/pdb/index.js.map +0 -1
- package/src/pdb/pdb-helper.d.ts.map +0 -1
- package/src/pdb/pdb-helper.js.map +0 -1
- package/src/pdb/types.d.ts.map +0 -1
- package/src/pdb/types.js.map +0 -1
- package/src/seq-palettes.d.ts.map +0 -1
- package/src/seq-palettes.js.map +0 -1
- package/src/sequence-encoder.d.ts.map +0 -1
- package/src/sequence-encoder.js.map +0 -1
- package/src/substructure-filter/bio-substructure-filter-types.d.ts.map +0 -1
- package/src/substructure-filter/bio-substructure-filter-types.js.map +0 -1
- package/src/tests/monomer-lib-tests.d.ts.map +0 -1
- package/src/tests/monomer-lib-tests.js.map +0 -1
- package/src/tests/palettes-tests.d.ts.map +0 -1
- package/src/tests/palettes-tests.js.map +0 -1
- package/src/trees/consts.d.ts.map +0 -1
- package/src/trees/consts.js.map +0 -1
- package/src/trees/dendrogram.d.ts.map +0 -1
- package/src/trees/dendrogram.js.map +0 -1
- package/src/trees/index.d.ts.map +0 -1
- package/src/trees/index.js.map +0 -1
- package/src/trees/phylocanvas.d.ts.map +0 -1
- package/src/trees/phylocanvas.js.map +0 -1
- package/src/trees/tree-helper.d.ts.map +0 -1
- package/src/trees/tree-helper.js.map +0 -1
- package/src/trees/types.d.ts.map +0 -1
- package/src/trees/types.js.map +0 -1
- package/src/trees/utils.d.ts.map +0 -1
- package/src/trees/utils.js.map +0 -1
- package/src/types/dojo.d.ts.map +0 -1
- package/src/types/dojo.js.map +0 -1
- package/src/types/index.d.ts.map +0 -1
- package/src/types/index.js.map +0 -1
- package/src/types/input.d.ts.map +0 -1
- package/src/types/input.js.map +0 -1
- package/src/types/monomer-library.d.ts.map +0 -1
- package/src/types/monomer-library.js.map +0 -1
- package/src/types/ngl.d.ts.map +0 -1
- package/src/types/ngl.js.map +0 -1
- package/src/types/renderer.d.ts.map +0 -1
- package/src/types/renderer.js.map +0 -1
- package/src/unknown.d.ts.map +0 -1
- package/src/unknown.js.map +0 -1
- package/src/utils/annotation-track.d.ts.map +0 -1
- package/src/utils/annotation-track.js.map +0 -1
- package/src/utils/cell-renderer-annotations.d.ts.map +0 -1
- package/src/utils/cell-renderer-annotations.js.map +0 -1
- package/src/utils/cell-renderer-async-base.d.ts.map +0 -1
- package/src/utils/cell-renderer-async-base.js.map +0 -1
- package/src/utils/cell-renderer-back-base.d.ts.map +0 -1
- package/src/utils/cell-renderer-back-base.js.map +0 -1
- package/src/utils/cell-renderer-consts.d.ts.map +0 -1
- package/src/utils/cell-renderer-consts.js +0 -10
- package/src/utils/cell-renderer-consts.js.map +0 -1
- package/src/utils/cell-renderer-monomer-placer.d.ts.map +0 -1
- package/src/utils/cell-renderer-monomer-placer.js.map +0 -1
- package/src/utils/cell-renderer.d.ts.map +0 -1
- package/src/utils/cell-renderer.js.map +0 -1
- package/src/utils/composition-table.d.ts.map +0 -1
- package/src/utils/composition-table.js.map +0 -1
- package/src/utils/const.d.ts.map +0 -1
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@@ -1 +0,0 @@
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1
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@@ -1 +0,0 @@
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1
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@@ -1 +0,0 @@
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1
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@@ -1 +0,0 @@
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@@ -1 +0,0 @@
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1
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package/src/trees/consts.js.map
DELETED
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1
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@@ -1 +0,0 @@
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package/src/types/ngl.d.ts.map
DELETED
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1
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{"version":3,"file":"cell-renderer-consts.d.ts","sourceRoot":"","sources":["cell-renderer-consts.ts"],"names":[],"mappings":"AAIA,eAAO,MAAM,4BAA4B;;;CAGxC,CAAC;AAEF,kDAAkD;AAClD,0BAAkB,SAAS;IACzB,gBAAgB,sCAAsC;IACtD,SAAS,+BAA+B;IACxC,kBAAkB,wCAAwC;IAC1D,mBAAmB,yCAAyC;IAC5D,SAAS,+BAA+B;IACxC,aAAa,mCAAmC;IAChD,QAAQ,8BAA8B;IAEtC,uBAAuB,qCAAqC;IAC5D,iBAAiB,uCAAuC;CACzD;AAED,0BAAkB,QAAQ;IACxB,iBAAiB,uBAAuB;IACxC,WAAW,iBAAiB;CAC7B;AAED,eAAO,MAAM,cAAc;;;;CAI1B,CAAC"}
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@@ -1,10 +0,0 @@
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1
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-
export const rendererSettingsChangedState = {
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2
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true: '1',
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3
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false: '0',
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4
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};
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5
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export const MULTILINE_TAGS = {
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6
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-
renderMultiline: '.mm.cellRenderer.renderMultiline',
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7
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monomersPerLine: '.mm.cellRenderer.monomersPerLine',
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8
|
-
maxVisibleLines: '.mm.cellRenderer.maxVisibleLines'
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9
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};
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10
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//# sourceMappingURL=cell-renderer-consts.js.map
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1
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-
{"version":3,"file":"cell-renderer-consts.js","sourceRoot":"","sources":["cell-renderer-consts.ts"],"names":[],"mappings":"AAIA,MAAM,CAAC,MAAM,4BAA4B,GAAG;IAC1C,IAAI,EAAE,GAAG;IACT,KAAK,EAAE,GAAG;CACX,CAAC;AAqBF,MAAM,CAAC,MAAM,cAAc,GAAG;IAC5B,eAAe,EAAE,kCAAkC;IACnD,eAAe,EAAE,kCAAkC;IACnD,eAAe,EAAE,kCAAkC;CACpD,CAAC"}
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@@ -1 +0,0 @@
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1
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-
{"version":3,"file":"cell-renderer-monomer-placer.d.ts","sourceRoot":"","sources":["cell-renderer-monomer-placer.ts"],"names":[],"mappings":"AAGA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAKtC,OAAO,EAAW,kBAAkB,EAA0C,MAAM,iBAAiB,CAAC;AAEtG,OAAO,EAAC,oBAAoB,EAAC,MAAM,2BAA2B,CAAC;AAC/D,OAAO,EAAC,OAAO,EAAC,MAAM,UAAU,CAAC;AAMjC,OAAO,EAAC,eAAe,EAAC,MAAM,0BAA0B,CAAC;AAWzD,KAAK,kBAAkB,GAAG;IACxB,cAAc,EAAE,MAAM,CAAC;IACvB,cAAc,EAAE,kBAAkB,CAAC;IACnC,IAAI,EAAE,MAAM,CAAC;IACb,aAAa,EAAE,MAAM,CAAC;CACvB,CAAC;AAEF,eAAO,MAAM,cAAc,qBAAqB,CAAC;AAEjD,eAAO,MAAM,sBAAsB,QAAQ,CAAC;AAE5C;mCACmC;AACnC,wBAAgB,SAAS,CAAC,MAAM,EAAE,MAAM,EAAE,EAAE,CAAC,EAAE,MAAM,EAAE,mBAAmB,CAAC,EAAE,MAAM,GAAG,MAAM,GAAG,IAAI,CAwBlG;AAiBD,qBAAa,aAAc,SAAQ,oBAAoB,CAAC,MAAM,CAAC;IAqCpD,kBAAkB,EAAE,MAAM;IACjC,OAAO,CAAC,QAAQ,CAAC,aAAa;IArChC,OAAO,CAAC,QAAQ,CAAa;IAC7B,OAAO,CAAC,kBAAkB,CAA2B;IAGrD,OAAO,KAAK,cAAc,GAAwE;IAC3F,KAAK,EAAE,kBAAkB,CAAC;IACjC,OAAO,CAAC,cAAc,CAAY;IAClC,OAAO,CAAC,6BAA6B,CAAa;IAE3C,iBAAiB,EAAE;QAAE,CAAC,GAAG,EAAE,MAAM,GAAG,WAAW,CAAA;KAAE,CAAM;IACvD,oBAAoB,EAAE;QAAE,CAAC,GAAG,EAAE,MAAM,GAAG,WAAW,CAAA;KAAE,CAAM;IAEjE,OAAO,CAAC,eAAe,CAAkC;IACzD,OAAO,CAAC,iBAAiB,CAAa;IACtC,OAAO,CAAC,WAAW,CAAc;IAEjC,OAAO,CAAC,WAAW,CAAgD;IAEnE,OAAO,CAAC,SAAS,CAAc;IAE/B,OAAO,CAAC,aAAa,CAAgC;IAErD,gFAAgF;IAChF,OAAO,CAAC,mBAAmB,CAAmC;IAE9D,OAAO,CAAC,qBAAqB;IAM7B,sEAAsE;gBAEpE,OAAO,EAAE,EAAE,CAAC,UAAU,GAAG,IAAI,EAC7B,QAAQ,EAAE,EAAE,CAAC,MAAM,CAAC,MAAM,CAAC,EAC3B,MAAM,EAAE,OAAO,EACR,kBAAkB,EAAE,MAAM,EAChB,aAAa,EAAE,MAAM,kBAAkB;IA2C1D,OAAO,CAAC,yBAAyB;IAwBjC,OAAO,CAAC,2BAA2B;IAKnC,OAAO,CAAC,+BAA+B;IAsE1B,IAAI,IAAI,OAAO,CAAC,IAAI,CAAC;IAsBlC,OAAO,CAAC,oBAAoB;IAqB5B,OAAO,CAAC,kBAAkB;IAU1B,OAAO,CAAC,uBAAuB;WAiBjB,eAAe,CAAC,QAAQ,CAAC,EAAE,EAAE,CAAC,MAAM;;;;IAWzC,KAAK,IAAI,MAAM;IAIxB,SAAS,CAAC,aAAa,IAAI,eAAe,GAAG,IAAI;cAI9B,KAAK,IAAI,IAAI;IAYhC,SAAS,CAAC,cAAc,IAAI,IAAI;IAIhC,qGAAqG;IAC9F,qBAAqB,CAAC,MAAM,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,CAAC,MAAM,EAAE,EAAE,MAAM,EAAE,CAAC;IAmBpF,OAAO,CAAC,uBAAuB;IAgB/B,OAAO,CAAC,gCAAgC;IAqBxC,OAAO,CAAC,2BAA2B;IAgCnC,OAAO,CAAC,8BAA8B;IAoDtC,yCAAyC;IAClC,WAAW,CAAC,MAAM,EAAE,MAAM,EAAE,CAAC,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM,EAAE,oBAAoB,CAAC,EAAE,MAAM,GAAG,MAAM,GAAG,IAAI;IAWnG,qBAAqB,CAAC,KAAK,EAAE,MAAM,GAAG,IAAI;IAO1C,iBAAiB,CAAC,KAAK,EAAE,MAAM,GAAG,IAAI;IAO7C,OAAO,CAAC,OAAO,CAAa;IAE5B,IAAI,aAAa,IAAI,MAAM,CAG1B;IAED,OAAO,CAAC,qBAAqB,CAAa;IAE1C,MAAM,CAAC,CAAC,EAAE,wBAAwB,EAAE,CAAC,EAAE,MAAM,EAAE,CAAC,EAAE,MAAM,EAAE,CAAC,EAAE,MAAM,EAAE,CAAC,EAAE,MAAM,EAC5E,QAAQ,EAAE,EAAE,CAAC,QAAQ,EAAE,UAAU,EAAE,EAAE,CAAC,aAAa;IA8NrD,OAAO,CAAC,4BAA4B;IAI3B,WAAW,CAAC,QAAQ,EAAE,EAAE,CAAC,QAAQ,EAAE,CAAC,EAAE,UAAU,GAAG,IAAI;CAiFjE;AAED,wBAAgB,eAAe,CAC7B,IAAI,EAAE,EAAE,CAAC,IAAI,GAAG,IAAI,GAAG,SAAS,EAAE,CAAC,EAAE,wBAAwB,EAAE,CAAC,EAAE,MAAM,EAAE,CAAC,EAAE,MAAM,EAAE,GAAG,EAAE,MAAM,GAC/F,MAAM,CAER"}
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@@ -1 +0,0 @@
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1
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@@ -1 +0,0 @@
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1
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-
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@@ -1 +0,0 @@
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1
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-
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package/src/utils/const.d.ts.map
DELETED
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1
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-
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package/src/utils/const.js
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1
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-
import { MonomerTypes, PolymerTypes } from '../helm/consts';
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2
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-
// hwe exports the HELM type vocabulary as `as const` objects (value-only), not
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3
|
-
// TS enums, so we re-create the value+type duality the old `import X = Enum`
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4
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-
// aliases provided — consumers use these both as a value (`.RNA`) and as a type.
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5
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-
const HELM_POLYMER_TYPE = PolymerTypes;
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6
|
-
const HELM_MONOMER_TYPE = MonomerTypes;
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7
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-
export { HELM_POLYMER_TYPE, HELM_MONOMER_TYPE };
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8
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-
// core fields of HELM library object used in toAtomicLevel function
|
|
9
|
-
export const HELM_CORE_FIELDS = [
|
|
10
|
-
"symbol" /* HELM_FIELDS.SYMBOL */,
|
|
11
|
-
"molfile" /* HELM_FIELDS.MOLFILE */,
|
|
12
|
-
"rgroups" /* HELM_FIELDS.RGROUPS */,
|
|
13
|
-
"name" /* HELM_FIELDS.NAME */,
|
|
14
|
-
// HELM_FIELDS.MONOMER_TYPE, // add if terminal monomers for PEPTIDEs to be
|
|
15
|
-
// supported
|
|
16
|
-
];
|
|
17
|
-
export const SDF_MONOMER_NAME = 'MonomerName';
|
|
18
|
-
// todo: ideally, keys should be expressed via constants
|
|
19
|
-
export const jsonSdfMonomerLibDict = {
|
|
20
|
-
'monomerType': null, // -> Backbone
|
|
21
|
-
'smiles': null,
|
|
22
|
-
'name': 'Name',
|
|
23
|
-
'author': null,
|
|
24
|
-
'molfile': 'molecule',
|
|
25
|
-
'naturalAnalog': 'MonomerNaturalAnalogCode',
|
|
26
|
-
'rgroups': 'MonomerCaps',
|
|
27
|
-
'createDate': null,
|
|
28
|
-
'id': null,
|
|
29
|
-
'polymerType': 'MonomerType',
|
|
30
|
-
'symbol': 'MonomerName'
|
|
31
|
-
};
|
|
32
|
-
export const DUMMY_MONOMER = {
|
|
33
|
-
'monomerType': 'Backbone',
|
|
34
|
-
'smiles': '',
|
|
35
|
-
'name': '',
|
|
36
|
-
'author': 'Datagrok',
|
|
37
|
-
'molfile': '',
|
|
38
|
-
'naturalAnalog': '',
|
|
39
|
-
'rgroups': [],
|
|
40
|
-
'createDate': null,
|
|
41
|
-
'id': 0,
|
|
42
|
-
'polymerType': 'PEPTIDE',
|
|
43
|
-
'symbol': ''
|
|
44
|
-
};
|
|
45
|
-
// range of hex nubers used in PepSea library to endode monomers
|
|
46
|
-
export const MONOMER_ENCODE_MIN = 0x100;
|
|
47
|
-
export const MONOMER_ENCODE_MAX = 0x40A;
|
|
48
|
-
export const RIBOSE_SYMBOL = 'r';
|
|
49
|
-
export const DEOXYRIBOSE_SYMBOL = 'd';
|
|
50
|
-
export const PHOSPHATE_SYMBOL = 'p';
|
|
51
|
-
export const HELM_WRAPPERS_REGEXP = new RegExp(`[${RIBOSE_SYMBOL}${DEOXYRIBOSE_SYMBOL}]\\((\\w)\\)${PHOSPHATE_SYMBOL}?`, 'g');
|
|
52
|
-
//# sourceMappingURL=const.js.map
|
package/src/utils/const.js.map
DELETED
|
@@ -1 +0,0 @@
|
|
|
1
|
-
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|
|
@@ -1 +0,0 @@
|
|
|
1
|
-
{"version":3,"file":"data-provider.d.ts","sourceRoot":"","sources":["data-provider.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAEtC,MAAM,MAAM,gBAAgB,CAAC,GAAG,EAAE,MAAM,IAAI,CAAC,EAAE,EAAE,GAAG,KAAK,OAAO,CAAC,MAAM,CAAC,CAAC;AAEzE,wBAAsB,mBAAmB,CAAC,OAAO,EAAE,MAAM,GAAG,OAAO,CAAC,EAAE,CAAC,IAAI,EAAE,CAAC,CAK7E"}
|
|
@@ -1 +0,0 @@
|
|
|
1
|
-
{"version":3,"file":"data-provider.js","sourceRoot":"","sources":["data-provider.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,IAAI,MAAM,mBAAmB,CAAC;AAK1C,MAAM,CAAC,KAAK,UAAU,mBAAmB,CAAC,OAAe;IACvD,OAAO,IAAI,CAAC,IAAI,CAAC,SAAS;SACvB,OAAO,CAAC,mBAAmB,CAAC;SAC5B,MAAM,CAAC,yBAAyB,OAAO,GAAG,CAAC;SAC3C,IAAI,EAAE,CAAC;AACZ,CAAC"}
|