@datagrok-libraries/bio 6.0.3 → 6.0.6

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (603) hide show
  1. package/.turbo/turbo-build.log +5 -0
  2. package/CHANGELOG.md +4 -0
  3. package/CLAUDE.md +1 -1
  4. package/LICENSE.md +16 -0
  5. package/cleanup +0 -0
  6. package/dist/src/aminoacids.d.ts.map +1 -0
  7. package/dist/src/aminoacids.js.map +1 -0
  8. package/dist/src/chem/rdkit-module.d.ts.map +1 -0
  9. package/dist/src/chem/rdkit-module.js.map +1 -0
  10. package/dist/src/consts/index.d.ts.map +1 -0
  11. package/dist/src/consts/index.js.map +1 -0
  12. package/dist/src/helm/consts.d.ts.map +1 -0
  13. package/dist/src/helm/consts.js.map +1 -0
  14. package/dist/src/helm/helm-helper.d.ts.map +1 -0
  15. package/dist/src/helm/helm-helper.js.map +1 -0
  16. package/dist/src/helm/types.d.ts.map +1 -0
  17. package/dist/src/helm/types.js.map +1 -0
  18. package/dist/src/helm/utils.d.ts.map +1 -0
  19. package/dist/src/helm/utils.js.map +1 -0
  20. package/dist/src/molecule/molecule-build-data.d.ts.map +1 -0
  21. package/dist/src/molecule/molecule-build-data.js.map +1 -0
  22. package/dist/src/molecule/molecule-units-handler.d.ts.map +1 -0
  23. package/dist/src/molecule/molecule-units-handler.js.map +1 -0
  24. package/dist/src/molecule/types.d.ts.map +1 -0
  25. package/dist/src/molecule/types.js.map +1 -0
  26. package/dist/src/molecule-3d/index.d.ts.map +1 -0
  27. package/dist/src/molecule-3d/index.js.map +1 -0
  28. package/dist/src/molecule-3d/molecule-3d-build-data.d.ts.map +1 -0
  29. package/dist/src/molecule-3d/molecule-3d-build-data.js.map +1 -0
  30. package/dist/src/molecule-3d/molecule-3d-units-handler.d.ts.map +1 -0
  31. package/dist/src/molecule-3d/molecule-3d-units-handler.js.map +1 -0
  32. package/dist/src/molecule-3d/types.d.ts.map +1 -0
  33. package/dist/src/molecule-3d/types.js.map +1 -0
  34. package/dist/src/monomer-works/consts.d.ts +36 -0
  35. package/dist/src/monomer-works/consts.d.ts.map +1 -0
  36. package/dist/src/monomer-works/consts.js.map +1 -0
  37. package/dist/src/monomer-works/lib-events.d.ts +11 -0
  38. package/dist/src/monomer-works/lib-events.d.ts.map +1 -0
  39. package/dist/src/monomer-works/lib-events.js +13 -0
  40. package/dist/src/monomer-works/lib-events.js.map +1 -0
  41. package/dist/src/monomer-works/lib-settings.d.ts.map +1 -0
  42. package/dist/src/monomer-works/lib-settings.js.map +1 -0
  43. package/dist/src/monomer-works/monomer-hover.d.ts.map +1 -0
  44. package/dist/src/monomer-works/monomer-hover.js.map +1 -0
  45. package/dist/src/monomer-works/monomer-utils.d.ts.map +1 -0
  46. package/{src → dist/src}/monomer-works/monomer-utils.js +4 -17
  47. package/dist/src/monomer-works/monomer-utils.js.map +1 -0
  48. package/dist/src/monomer-works/monomer-works.d.ts.map +1 -0
  49. package/dist/src/monomer-works/monomer-works.js.map +1 -0
  50. package/dist/src/monomer-works/seq-to-molfile-worker.d.ts.map +1 -0
  51. package/dist/src/monomer-works/seq-to-molfile-worker.js.map +1 -0
  52. package/dist/src/monomer-works/seq-to-molfile.d.ts.map +1 -0
  53. package/dist/src/monomer-works/seq-to-molfile.js.map +1 -0
  54. package/dist/src/monomer-works/to-atomic-level-utils.d.ts.map +1 -0
  55. package/dist/src/monomer-works/to-atomic-level-utils.js.map +1 -0
  56. package/dist/src/monomer-works/to-atomic-level.d.ts.map +1 -0
  57. package/dist/src/monomer-works/to-atomic-level.js.map +1 -0
  58. package/dist/src/monomer-works/types.d.ts.map +1 -0
  59. package/dist/src/monomer-works/types.js.map +1 -0
  60. package/dist/src/monomer-works/utils.d.ts.map +1 -0
  61. package/dist/src/monomer-works/utils.js.map +1 -0
  62. package/dist/src/ntseq/ntseq.js +1349 -0
  63. package/dist/src/nucleotides.d.ts.map +1 -0
  64. package/dist/src/nucleotides.js.map +1 -0
  65. package/dist/src/pdb/auto-dock-service.d.ts.map +1 -0
  66. package/dist/src/pdb/auto-dock-service.js.map +1 -0
  67. package/dist/src/pdb/format/types-base.d.ts.map +1 -0
  68. package/dist/src/pdb/format/types-base.js.map +1 -0
  69. package/dist/src/pdb/format/types-pdb.d.ts.map +1 -0
  70. package/dist/src/pdb/format/types-pdb.js.map +1 -0
  71. package/dist/src/pdb/format/types-pdbqt.d.ts.map +1 -0
  72. package/dist/src/pdb/format/types-pdbqt.js.map +1 -0
  73. package/dist/src/pdb/format/types.d.ts.map +1 -0
  74. package/dist/src/pdb/format/types.js.map +1 -0
  75. package/dist/src/pdb/index.d.ts.map +1 -0
  76. package/dist/src/pdb/index.js.map +1 -0
  77. package/dist/src/pdb/pdb-helper.d.ts.map +1 -0
  78. package/dist/src/pdb/pdb-helper.js.map +1 -0
  79. package/dist/src/pdb/types.d.ts.map +1 -0
  80. package/dist/src/pdb/types.js.map +1 -0
  81. package/dist/src/seq-palettes.d.ts.map +1 -0
  82. package/dist/src/seq-palettes.js.map +1 -0
  83. package/dist/src/sequence-encoder.d.ts.map +1 -0
  84. package/dist/src/sequence-encoder.js.map +1 -0
  85. package/dist/src/substructure-filter/bio-substructure-filter-types.d.ts.map +1 -0
  86. package/dist/src/substructure-filter/bio-substructure-filter-types.js.map +1 -0
  87. package/dist/src/tests/monomer-lib-tests.d.ts.map +1 -0
  88. package/dist/src/tests/monomer-lib-tests.js.map +1 -0
  89. package/dist/src/tests/palettes-tests.d.ts.map +1 -0
  90. package/dist/src/tests/palettes-tests.js.map +1 -0
  91. package/dist/src/trees/consts.d.ts.map +1 -0
  92. package/dist/src/trees/consts.js.map +1 -0
  93. package/dist/src/trees/dendrogram.d.ts.map +1 -0
  94. package/dist/src/trees/dendrogram.js.map +1 -0
  95. package/dist/src/trees/index.d.ts.map +1 -0
  96. package/dist/src/trees/index.js.map +1 -0
  97. package/dist/src/trees/phylocanvas.d.ts.map +1 -0
  98. package/dist/src/trees/phylocanvas.js.map +1 -0
  99. package/dist/src/trees/tree-helper.d.ts.map +1 -0
  100. package/dist/src/trees/tree-helper.js.map +1 -0
  101. package/dist/src/trees/types.d.ts.map +1 -0
  102. package/dist/src/trees/types.js.map +1 -0
  103. package/dist/src/trees/utils.d.ts.map +1 -0
  104. package/dist/src/trees/utils.js.map +1 -0
  105. package/dist/src/types/dojo.d.ts.map +1 -0
  106. package/dist/src/types/dojo.js.map +1 -0
  107. package/dist/src/types/index.d.ts.map +1 -0
  108. package/dist/src/types/index.js.map +1 -0
  109. package/dist/src/types/input.d.ts.map +1 -0
  110. package/dist/src/types/input.js.map +1 -0
  111. package/dist/src/types/monomer-library.d.ts.map +1 -0
  112. package/dist/src/types/monomer-library.js.map +1 -0
  113. package/dist/src/types/ngl.d.ts.map +1 -0
  114. package/dist/src/types/ngl.js.map +1 -0
  115. package/dist/src/types/renderer.d.ts.map +1 -0
  116. package/dist/src/types/renderer.js.map +1 -0
  117. package/dist/src/unknown.d.ts.map +1 -0
  118. package/dist/src/unknown.js.map +1 -0
  119. package/dist/src/utils/annotation-track.d.ts.map +1 -0
  120. package/dist/src/utils/annotation-track.js.map +1 -0
  121. package/dist/src/utils/cell-renderer-annotations.d.ts.map +1 -0
  122. package/dist/src/utils/cell-renderer-annotations.js.map +1 -0
  123. package/dist/src/utils/cell-renderer-async-base.d.ts.map +1 -0
  124. package/dist/src/utils/cell-renderer-async-base.js.map +1 -0
  125. package/dist/src/utils/cell-renderer-back-base.d.ts.map +1 -0
  126. package/dist/src/utils/cell-renderer-back-base.js.map +1 -0
  127. package/dist/src/utils/cell-renderer-consts.d.ts.map +1 -0
  128. package/dist/src/utils/cell-renderer-consts.js +28 -0
  129. package/dist/src/utils/cell-renderer-consts.js.map +1 -0
  130. package/dist/src/utils/cell-renderer-monomer-placer.d.ts.map +1 -0
  131. package/dist/src/utils/cell-renderer-monomer-placer.js.map +1 -0
  132. package/dist/src/utils/cell-renderer.d.ts.map +1 -0
  133. package/dist/src/utils/cell-renderer.js.map +1 -0
  134. package/dist/src/utils/composition-table.d.ts.map +1 -0
  135. package/dist/src/utils/composition-table.js.map +1 -0
  136. package/{src → dist/src}/utils/const.d.ts +6 -6
  137. package/dist/src/utils/const.d.ts.map +1 -0
  138. package/dist/src/utils/const.js +97 -0
  139. package/dist/src/utils/const.js.map +1 -0
  140. package/dist/src/utils/data-provider.d.ts.map +1 -0
  141. package/dist/src/utils/data-provider.js.map +1 -0
  142. package/dist/src/utils/docker.d.ts.map +1 -0
  143. package/dist/src/utils/docker.js.map +1 -0
  144. package/dist/src/utils/err-info.d.ts.map +1 -0
  145. package/dist/src/utils/err-info.js.map +1 -0
  146. package/dist/src/utils/fasta-handler.d.ts.map +1 -0
  147. package/dist/src/utils/fasta-handler.js.map +1 -0
  148. package/dist/src/utils/generator.d.ts.map +1 -0
  149. package/dist/src/utils/generator.js.map +1 -0
  150. package/dist/src/utils/logger.d.ts.map +1 -0
  151. package/dist/src/utils/logger.js.map +1 -0
  152. package/dist/src/utils/macromolecule/alignment.d.ts.map +1 -0
  153. package/dist/src/utils/macromolecule/alignment.js.map +1 -0
  154. package/{src → dist/src}/utils/macromolecule/annotations.d.ts +7 -7
  155. package/dist/src/utils/macromolecule/annotations.d.ts.map +1 -0
  156. package/dist/src/utils/macromolecule/annotations.js.map +1 -0
  157. package/dist/src/utils/macromolecule/consts.d.ts.map +1 -0
  158. package/{src → dist/src}/utils/macromolecule/consts.js +5 -0
  159. package/dist/src/utils/macromolecule/consts.js.map +1 -0
  160. package/dist/src/utils/macromolecule/index.d.ts.map +1 -0
  161. package/{src → dist/src}/utils/macromolecule/index.js +1 -1
  162. package/dist/src/utils/macromolecule/index.js.map +1 -0
  163. package/dist/src/utils/macromolecule/monomers.d.ts.map +1 -0
  164. package/dist/src/utils/macromolecule/monomers.js.map +1 -0
  165. package/dist/src/utils/macromolecule/numbering-schemes.d.ts.map +1 -0
  166. package/dist/src/utils/macromolecule/numbering-schemes.js.map +1 -0
  167. package/dist/src/utils/macromolecule/scoring.d.ts.map +1 -0
  168. package/dist/src/utils/macromolecule/scoring.js.map +1 -0
  169. package/dist/src/utils/macromolecule/seq-handler.d.ts.map +1 -0
  170. package/dist/src/utils/macromolecule/seq-handler.js.map +1 -0
  171. package/dist/src/utils/macromolecule/types.d.ts.map +1 -0
  172. package/dist/src/utils/macromolecule/types.js.map +1 -0
  173. package/dist/src/utils/macromolecule/utils.d.ts.map +1 -0
  174. package/dist/src/utils/macromolecule/utils.js.map +1 -0
  175. package/dist/src/utils/macromolecule-highlight.d.ts.map +1 -0
  176. package/dist/src/utils/macromolecule-highlight.js.map +1 -0
  177. package/dist/src/utils/monomer-selection-dialog.d.ts.map +1 -0
  178. package/dist/src/utils/monomer-selection-dialog.js.map +1 -0
  179. package/dist/src/utils/monomer-ui.d.ts.map +1 -0
  180. package/dist/src/utils/monomer-ui.js.map +1 -0
  181. package/dist/src/utils/seq-helper.d.ts.map +1 -0
  182. package/dist/src/utils/seq-helper.js.map +1 -0
  183. package/dist/src/utils/sequence-column-input.d.ts.map +1 -0
  184. package/dist/src/utils/sequence-column-input.js.map +1 -0
  185. package/{src → dist/src}/utils/sequence-position-scroller.d.ts +20 -0
  186. package/dist/src/utils/sequence-position-scroller.d.ts.map +1 -0
  187. package/{src → dist/src}/utils/sequence-position-scroller.js +124 -23
  188. package/dist/src/utils/sequence-position-scroller.js.map +1 -0
  189. package/dist/src/utils/splitter.d.ts.map +1 -0
  190. package/dist/src/utils/splitter.js.map +1 -0
  191. package/dist/src/utils/syncer.d.ts.map +1 -0
  192. package/dist/src/utils/syncer.js.map +1 -0
  193. package/dist/src/utils/units-handler-base.d.ts.map +1 -0
  194. package/dist/src/utils/units-handler-base.js.map +1 -0
  195. package/dist/src/utils.d.ts.map +1 -0
  196. package/dist/src/utils.js.map +1 -0
  197. package/dist/src/viewers/biotrack.d.ts.map +1 -0
  198. package/dist/src/viewers/biotrack.js.map +1 -0
  199. package/dist/src/viewers/helm-service.d.ts.map +1 -0
  200. package/dist/src/viewers/helm-service.js.map +1 -0
  201. package/dist/src/viewers/molecule3d.d.ts.map +1 -0
  202. package/dist/src/viewers/molecule3d.js.map +1 -0
  203. package/dist/src/viewers/molstar-viewer.d.ts.map +1 -0
  204. package/dist/src/viewers/molstar-viewer.js.map +1 -0
  205. package/dist/src/viewers/ngl-gl-service.d.ts.map +1 -0
  206. package/dist/src/viewers/ngl-gl-service.js.map +1 -0
  207. package/dist/src/viewers/ngl-gl-viewer.d.ts.map +1 -0
  208. package/dist/src/viewers/ngl-gl-viewer.js.map +1 -0
  209. package/dist/src/viewers/phylocanvas-gl-viewer.d.ts.map +1 -0
  210. package/dist/src/viewers/phylocanvas-gl-viewer.js.map +1 -0
  211. package/dist/src/viewers/vd-regions.d.ts.map +1 -0
  212. package/dist/src/viewers/vd-regions.js.map +1 -0
  213. package/dist/src/viewers/viewer.d.ts.map +1 -0
  214. package/dist/src/viewers/viewer.js.map +1 -0
  215. package/dist/src/viewers/web-logo.d.ts.map +1 -0
  216. package/dist/src/viewers/web-logo.js.map +1 -0
  217. package/package.json +55 -32
  218. package/tsconfig.json +2 -67
  219. package/src/aminoacids.d.ts.map +0 -1
  220. package/src/aminoacids.js.map +0 -1
  221. package/src/chem/rdkit-module.d.ts.map +0 -1
  222. package/src/chem/rdkit-module.js.map +0 -1
  223. package/src/consts/index.d.ts.map +0 -1
  224. package/src/consts/index.js.map +0 -1
  225. package/src/helm/consts.d.ts.map +0 -1
  226. package/src/helm/consts.js.map +0 -1
  227. package/src/helm/helm-helper.d.ts.map +0 -1
  228. package/src/helm/helm-helper.js.map +0 -1
  229. package/src/helm/types.d.ts.map +0 -1
  230. package/src/helm/types.js.map +0 -1
  231. package/src/helm/utils.d.ts.map +0 -1
  232. package/src/helm/utils.js.map +0 -1
  233. package/src/molecule/molecule-build-data.d.ts.map +0 -1
  234. package/src/molecule/molecule-build-data.js.map +0 -1
  235. package/src/molecule/molecule-units-handler.d.ts.map +0 -1
  236. package/src/molecule/molecule-units-handler.js.map +0 -1
  237. package/src/molecule/types.d.ts.map +0 -1
  238. package/src/molecule/types.js.map +0 -1
  239. package/src/molecule-3d/index.d.ts.map +0 -1
  240. package/src/molecule-3d/index.js.map +0 -1
  241. package/src/molecule-3d/molecule-3d-build-data.d.ts.map +0 -1
  242. package/src/molecule-3d/molecule-3d-build-data.js.map +0 -1
  243. package/src/molecule-3d/molecule-3d-units-handler.d.ts.map +0 -1
  244. package/src/molecule-3d/molecule-3d-units-handler.js.map +0 -1
  245. package/src/molecule-3d/types.d.ts.map +0 -1
  246. package/src/molecule-3d/types.js.map +0 -1
  247. package/src/monomer-works/consts.d.ts +0 -36
  248. package/src/monomer-works/consts.d.ts.map +0 -1
  249. package/src/monomer-works/consts.js.map +0 -1
  250. package/src/monomer-works/lib-settings.d.ts.map +0 -1
  251. package/src/monomer-works/lib-settings.js.map +0 -1
  252. package/src/monomer-works/monomer-hover.d.ts.map +0 -1
  253. package/src/monomer-works/monomer-hover.js.map +0 -1
  254. package/src/monomer-works/monomer-utils.d.ts.map +0 -1
  255. package/src/monomer-works/monomer-utils.js.map +0 -1
  256. package/src/monomer-works/monomer-works.d.ts.map +0 -1
  257. package/src/monomer-works/monomer-works.js.map +0 -1
  258. package/src/monomer-works/seq-to-molfile-worker.d.ts.map +0 -1
  259. package/src/monomer-works/seq-to-molfile-worker.js.map +0 -1
  260. package/src/monomer-works/seq-to-molfile.d.ts.map +0 -1
  261. package/src/monomer-works/seq-to-molfile.js.map +0 -1
  262. package/src/monomer-works/to-atomic-level-utils.d.ts.map +0 -1
  263. package/src/monomer-works/to-atomic-level-utils.js.map +0 -1
  264. package/src/monomer-works/to-atomic-level.d.ts.map +0 -1
  265. package/src/monomer-works/to-atomic-level.js.map +0 -1
  266. package/src/monomer-works/types.d.ts.map +0 -1
  267. package/src/monomer-works/types.js.map +0 -1
  268. package/src/monomer-works/utils.d.ts.map +0 -1
  269. package/src/monomer-works/utils.js.map +0 -1
  270. package/src/nucleotides.d.ts.map +0 -1
  271. package/src/nucleotides.js.map +0 -1
  272. package/src/pdb/auto-dock-service.d.ts.map +0 -1
  273. package/src/pdb/auto-dock-service.js.map +0 -1
  274. package/src/pdb/format/types-base.d.ts.map +0 -1
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  276. package/src/pdb/format/types-pdb.d.ts.map +0 -1
  277. package/src/pdb/format/types-pdb.js.map +0 -1
  278. package/src/pdb/format/types-pdbqt.d.ts.map +0 -1
  279. package/src/pdb/format/types-pdbqt.js.map +0 -1
  280. package/src/pdb/format/types.d.ts.map +0 -1
  281. package/src/pdb/format/types.js.map +0 -1
  282. package/src/pdb/index.d.ts.map +0 -1
  283. package/src/pdb/index.js.map +0 -1
  284. package/src/pdb/pdb-helper.d.ts.map +0 -1
  285. package/src/pdb/pdb-helper.js.map +0 -1
  286. package/src/pdb/types.d.ts.map +0 -1
  287. package/src/pdb/types.js.map +0 -1
  288. package/src/seq-palettes.d.ts.map +0 -1
  289. package/src/seq-palettes.js.map +0 -1
  290. package/src/sequence-encoder.d.ts.map +0 -1
  291. package/src/sequence-encoder.js.map +0 -1
  292. package/src/substructure-filter/bio-substructure-filter-types.d.ts.map +0 -1
  293. package/src/substructure-filter/bio-substructure-filter-types.js.map +0 -1
  294. package/src/tests/monomer-lib-tests.d.ts.map +0 -1
  295. package/src/tests/monomer-lib-tests.js.map +0 -1
  296. package/src/tests/palettes-tests.d.ts.map +0 -1
  297. package/src/tests/palettes-tests.js.map +0 -1
  298. package/src/trees/consts.d.ts.map +0 -1
  299. package/src/trees/consts.js.map +0 -1
  300. package/src/trees/dendrogram.d.ts.map +0 -1
  301. package/src/trees/dendrogram.js.map +0 -1
  302. package/src/trees/index.d.ts.map +0 -1
  303. package/src/trees/index.js.map +0 -1
  304. package/src/trees/phylocanvas.d.ts.map +0 -1
  305. package/src/trees/phylocanvas.js.map +0 -1
  306. package/src/trees/tree-helper.d.ts.map +0 -1
  307. package/src/trees/tree-helper.js.map +0 -1
  308. package/src/trees/types.d.ts.map +0 -1
  309. package/src/trees/types.js.map +0 -1
  310. package/src/trees/utils.d.ts.map +0 -1
  311. package/src/trees/utils.js.map +0 -1
  312. package/src/types/dojo.d.ts.map +0 -1
  313. package/src/types/dojo.js.map +0 -1
  314. package/src/types/index.d.ts.map +0 -1
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  416. package/src/viewers/web-logo.d.ts.map +0 -1
  417. package/src/viewers/web-logo.js.map +0 -1
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  422. /package/{src → dist/src}/consts/index.d.ts +0 -0
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  435. /package/{src → dist/src}/molecule/molecule-units-handler.js +0 -0
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  443. /package/{src → dist/src}/molecule-3d/molecule-3d-units-handler.js +0 -0
  444. /package/{src → dist/src}/molecule-3d/types.d.ts +0 -0
  445. /package/{src → dist/src}/molecule-3d/types.js +0 -0
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  448. /package/{src → dist/src}/monomer-works/lib-settings.js +0 -0
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  516. /package/{src → dist/src}/types/ngl.d.ts +0 -0
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  548. /package/{src → dist/src}/utils/logger.js +0 -0
  549. /package/{src → dist/src}/utils/macromolecule/alignment.d.ts +0 -0
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  551. /package/{src → dist/src}/utils/macromolecule/annotations.js +0 -0
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  553. /package/{src → dist/src}/utils/macromolecule/index.d.ts +0 -0
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  557. /package/{src → dist/src}/utils/macromolecule/numbering-schemes.js +0 -0
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  603. /package/{src → dist/src}/viewers/web-logo.js +0 -0
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/package/{src → dist/src}/viewers/viewer.d.ts RENAMED
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/package/{src → dist/src}/viewers/viewer.js RENAMED
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/package/{src → dist/src}/viewers/web-logo.d.ts RENAMED
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