@datagrok-libraries/bio 6.0.0 → 6.0.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
package/package.json CHANGED
@@ -8,7 +8,7 @@
8
8
  "access": "public"
9
9
  },
10
10
  "friendlyName": "Datagrok bio library",
11
- "version": "6.0.0",
11
+ "version": "6.0.1",
12
12
  "description": "Bio utilities, types supporting Macromolecule, Molecule3D data",
13
13
  "dependencies": {
14
14
  "@datagrok-libraries/chem-meta": "^1.2.7",
@@ -1 +1 @@
1
- {"version":3,"file":"lib-settings.d.ts","sourceRoot":"","sources":["lib-settings.ts"],"names":[],"mappings":"AAEA,OAAO,EAAC,eAAe,EAAC,MAAM,SAAS,CAAC;AA+CxC,wBAAsB,kBAAkB,IAAI,OAAO,CAAC,eAAe,CAAC,CAwBnE;AAED,wBAAsB,kBAAkB,CAAC,KAAK,EAAE,eAAe,GAAG,OAAO,CAAC,IAAI,CAAC,CAoB9E"}
1
+ {"version":3,"file":"lib-settings.d.ts","sourceRoot":"","sources":["lib-settings.ts"],"names":[],"mappings":"AAEA,OAAO,EAAC,eAAe,EAAC,MAAM,SAAS,CAAC;AA0DxC,wBAAsB,kBAAkB,IAAI,OAAO,CAAC,eAAe,CAAC,CAwBnE;AAED,wBAAsB,kBAAkB,CAAC,KAAK,EAAE,eAAe,GAAG,OAAO,CAAC,IAAI,CAAC,CAmB9E"}
@@ -14,12 +14,23 @@ async function getDuplicatePrefsFull() {
14
14
  if (!resStr)
15
15
  return {};
16
16
  // chunk will end with special suffix and just before it will have the number of the next chunk key
17
+ let iter = 1;
17
18
  while (resStr.endsWith(CHUNK_KEY_SUFFIX)) {
18
- const nextChunkKey = `${DUPLICATE_MONOMER_PREFERENCES_KEY}${resStr.charAt(resStr.length - CHUNK_KEY_SUFFIX.length - 1)}`;
19
+ const nextChunkKeysCount = iter.toString().length;
20
+ const nextChunkIndex = new Array(nextChunkKeysCount).fill(0)
21
+ .reduce((acc, _, i) => acc + resStr.charAt(resStr.length - nextChunkKeysCount + i - CHUNK_KEY_SUFFIX.length), '');
22
+ const nextChunkKey = `${DUPLICATE_MONOMER_PREFERENCES_KEY}${nextChunkIndex}`;
19
23
  const nextChunkStr = (await grok.userSettings.getValue(LIB_STORAGE_NAME, nextChunkKey, true)) ?? '';
20
- resStr = resStr.slice(0, resStr.length - CHUNK_KEY_SUFFIX.length - 1) + nextChunkStr;
24
+ resStr = resStr.slice(0, resStr.length - CHUNK_KEY_SUFFIX.length - nextChunkIndex.length) + nextChunkStr;
25
+ iter++;
26
+ }
27
+ try {
28
+ return JSON.parse(resStr);
29
+ }
30
+ catch (err) {
31
+ console.error(`Failed to parse duplicateMonomerPreferences from user settings: ${err}`);
32
+ return {};
21
33
  }
22
- return JSON.parse(resStr);
23
34
  }
24
35
  async function setDuplicatePrefsFull(value) {
25
36
  const valueStr = JSON.stringify(value);
@@ -73,7 +84,6 @@ export async function setUserLibSettings(value) {
73
84
  }
74
85
  await setDuplicatePrefsFull(duplicatePrefsShortHand);
75
86
  //await grok.userSettings.add(LIB_STORAGE_NAME, DUPLICATE_MONOMER_PREFERENCES_KEY, JSON.stringify(duplicatePrefsShortHand), true);
76
- value.duplicateMonomerPreferences = {}; // clear to reduce size
77
87
  await grok.userSettings.add(LIB_STORAGE_NAME, LIB_SETTINGS_KEY, JSON.stringify(value), true);
78
88
  });
79
89
  await userLibSettingsPromise;
@@ -1 +1 @@
1
- {"version":3,"file":"lib-settings.js","sourceRoot":"","sources":["lib-settings.ts"],"names":[],"mappings":"AAAA,4BAA4B;AAC5B,OAAO,KAAK,IAAI,MAAM,mBAAmB,CAAC;AAG1C,0BAA0B;AAC1B,MAAM,gBAAgB,GAAG,WAAW,CAAC;AACrC,MAAM,gBAAgB,GAAG,UAAU,CAAC;AACpC,MAAM,iCAAiC,GAAG,6BAA6B,CAAC;AAUxE,2GAA2G;AAC3G,mDAAmD;AACnD,MAAM,+BAA+B,GAAG,IAAI,CAAC;AAC7C,MAAM,gBAAgB,GAAG,WAAW,CAAC;AACrC,KAAK,UAAU,qBAAqB;IACpC,6EAA6E;IAC3E,IAAI,MAAM,GAAW,MAAM,IAAI,CAAC,YAAY,CAAC,QAAQ,CAAC,gBAAgB,EAAE,iCAAiC,EAAE,IAAI,CAAC,IAAI,EAAE,CAAC;IACvH,IAAI,CAAC,MAAM;QACT,OAAO,EAAE,CAAC;IACZ,mGAAmG;IACnG,OAAO,MAAM,CAAC,QAAQ,CAAC,gBAAgB,CAAC,EAAE,CAAC;QACzC,MAAM,YAAY,GAAG,GAAG,iCAAiC,GAAG,MAAM,CAAC,MAAM,CAAC,MAAM,CAAC,MAAM,GAAG,gBAAgB,CAAC,MAAM,GAAG,CAAC,CAAC,EAAE,CAAC;QACzH,MAAM,YAAY,GAAuB,CAAC,MAAM,IAAI,CAAC,YAAY,CAAC,QAAQ,CAAC,gBAAgB,EAAE,YAAY,EAAE,IAAI,CAAC,CAAC,IAAI,EAAE,CAAC;QACxH,MAAM,GAAG,MAAM,CAAC,KAAK,CAAC,CAAC,EAAE,MAAM,CAAC,MAAM,GAAG,gBAAgB,CAAC,MAAM,GAAG,CAAC,CAAC,GAAG,YAAY,CAAC;IACvF,CAAC;IACD,OAAO,IAAI,CAAC,KAAK,CAAC,MAAM,CAAC,CAAC;AAC5B,CAAC;AAED,KAAK,UAAU,qBAAqB,CAAC,KAA2C;IAC9E,MAAM,QAAQ,GAAW,IAAI,CAAC,SAAS,CAAC,KAAK,CAAC,CAAC;IAC/C,MAAM,WAAW,GAAG,IAAI,CAAC,IAAI,CAAC,QAAQ,CAAC,MAAM,GAAG,+BAA+B,CAAC,CAAC;IACjF,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,WAAW,EAAE,CAAC,EAAE,EAAE,CAAC;QACrC,MAAM,GAAG,GAAG,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,iCAAiC,CAAC,CAAC,CAAC,GAAG,iCAAiC,GAAG,CAAC,EAAE,CAAC;QACrG,MAAM,OAAO,GAAG,CAAC,GAAG,WAAW,GAAG,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC,CAAC,EAAE,CAAC;QACtD,MAAM,QAAQ,GAAG,QAAQ,CAAC,KAAK,CAAC,CAAC,GAAG,+BAA+B,EAAE,CAAC,CAAC,GAAG,CAAC,CAAC,GAAG,+BAA+B,CAAC,CAAC;QAChH,MAAM,eAAe,GAAG,OAAO,CAAC,CAAC,CAAC,QAAQ,GAAG,OAAO,GAAG,gBAAgB,CAAC,CAAC,CAAC,QAAQ,CAAC;QACnF,MAAM,IAAI,CAAC,YAAY,CAAC,GAAG,CAAC,gBAAgB,EAAE,GAAG,EAAE,eAAe,EAAE,IAAI,CAAC,CAAC;IAC5E,CAAC;AACH,CAAC;AAED,IAAI,sBAAsB,GAAkB,OAAO,CAAC,OAAO,EAAE,CAAC;AAE9D,MAAM,CAAC,KAAK,UAAU,kBAAkB;IACtC,IAAI,GAAoB,CAAC;IACzB,sBAAsB,GAAG,sBAAsB,CAAC,IAAI,CAAC,KAAK,IAAI,EAAE;QAC9D,MAAM,MAAM,GAAuB,MAAM,IAAI,CAAC,YAAY,CAAC,QAAQ,CAAC,gBAAgB,EAAE,gBAAgB,EAAE,IAAI,CAAC,CAAC;QAC9G,GAAG,GAAG,MAAM,CAAC,CAAC,CAAC,IAAI,CAAC,KAAK,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,EAAC,OAAO,EAAE,EAAE,EAAE,QAAQ,EAAE,EAAE,EAAE,2BAA2B,EAAE,EAAE,EAAC,CAAC;QACjG,MAAM,cAAc,GAAyC,MAAM,qBAAqB,EAAE,CAAC;QAC3F,yEAAyE;QACzE,GAAG,CAAC,OAAO,GAAG,GAAG,CAAC,OAAO,YAAY,KAAK,CAAC,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC,CAAC,EAAE,CAAC;QAC9D,GAAG,CAAC,QAAQ,GAAG,GAAG,CAAC,QAAQ,YAAY,KAAK,CAAC,CAAC,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC,CAAC,EAAE,CAAC;QACjE,GAAG,CAAC,2BAA2B,GAAG,GAAG,CAAC,2BAA2B,YAAY,MAAM,CAAC,CAAC;YACnF,GAAG,CAAC,2BAA2B,CAAC,CAAC,CAAC,EAAE,CAAC;QAEvC,oCAAoC;QACpC,KAAK,MAAM,WAAW,IAAI,cAAc,EAAE,CAAC;YACzC,GAAG,CAAC,2BAA2B,CAAC,WAAW,CAAC,GAAG,GAAG,CAAC,2BAA2B,CAAC,WAAW,CAAC,IAAI,EAAE,CAAC;YAClG,KAAK,MAAM,WAAW,IAAI,cAAc,CAAC,WAAW,CAAC,EAAE,CAAC;gBACtD,KAAK,MAAM,aAAa,IAAI,cAAc,CAAC,WAAW,CAAC,CAAC,WAAW,CAAC;oBAClE,GAAG,CAAC,2BAA2B,CAAC,WAAW,CAAC,CAAC,aAAa,CAAC,GAAG,WAAW,CAAC;YAC9E,CAAC;QACH,CAAC;QACD,oFAAoF;IACtF,CAAC,CAAC,CAAC;IACH,MAAM,sBAAsB,CAAC;IAC7B,OAAO,GAAI,CAAC;AACd,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,kBAAkB,CAAC,KAAsB;IAC7D,sBAAsB,GAAG,sBAAsB,CAAC,IAAI,CAAC,KAAK,IAAI,EAAE;QAC9D,KAAK,CAAC,2BAA2B,GAAG,KAAK,CAAC,2BAA2B,IAAI,EAAE,CAAC;QAC5E,sFAAsF;QACtF,qDAAqD;QACrD,MAAM,uBAAuB,GAAyC,EAAE,CAAC;QACzE,KAAK,MAAM,WAAW,IAAI,KAAK,CAAC,2BAA2B,EAAE,CAAC;YAC5D,uBAAuB,CAAC,WAAW,CAAC,GAAG,EAAE,CAAC;YAC1C,KAAK,MAAM,aAAa,IAAI,KAAK,CAAC,2BAA2B,CAAC,WAAW,CAAC,EAAE,CAAC;gBAC3E,MAAM,WAAW,GAAG,KAAK,CAAC,2BAA2B,CAAC,WAAW,CAAC,CAAC,aAAa,CAAC,CAAC;gBAClF,uBAAuB,CAAC,WAAW,CAAC,CAAC,WAAW,CAAC,GAAG,uBAAuB,CAAC,WAAW,CAAC,CAAC,WAAW,CAAC,IAAI,EAAE,CAAC;gBAC5G,uBAAuB,CAAC,WAAW,CAAC,CAAC,WAAW,CAAC,CAAC,IAAI,CAAC,aAAa,CAAC,CAAC;YACxE,CAAC;QACH,CAAC;QACD,MAAM,qBAAqB,CAAC,uBAAuB,CAAC,CAAC;QACrD,kIAAkI;QAClI,KAAK,CAAC,2BAA2B,GAAG,EAAE,CAAC,CAAC,uBAAuB;QAC/D,MAAM,IAAI,CAAC,YAAY,CAAC,GAAG,CAAC,gBAAgB,EAAE,gBAAgB,EAAE,IAAI,CAAC,SAAS,CAAC,KAAK,CAAC,EAAE,IAAI,CAAC,CAAC;IAC/F,CAAC,CAAC,CAAC;IACH,MAAM,sBAAsB,CAAC;AAC/B,CAAC"}
1
+ {"version":3,"file":"lib-settings.js","sourceRoot":"","sources":["lib-settings.ts"],"names":[],"mappings":"AAAA,4BAA4B;AAC5B,OAAO,KAAK,IAAI,MAAM,mBAAmB,CAAC;AAG1C,0BAA0B;AAC1B,MAAM,gBAAgB,GAAG,WAAW,CAAC;AACrC,MAAM,gBAAgB,GAAG,UAAU,CAAC;AACpC,MAAM,iCAAiC,GAAG,6BAA6B,CAAC;AAUxE,2GAA2G;AAC3G,mDAAmD;AACnD,MAAM,+BAA+B,GAAG,IAAI,CAAC;AAC7C,MAAM,gBAAgB,GAAG,WAAW,CAAC;AACrC,KAAK,UAAU,qBAAqB;IACpC,6EAA6E;IAC3E,IAAI,MAAM,GAAW,MAAM,IAAI,CAAC,YAAY,CAAC,QAAQ,CAAC,gBAAgB,EAAE,iCAAiC,EAAE,IAAI,CAAC,IAAI,EAAE,CAAC;IACvH,IAAI,CAAC,MAAM;QACT,OAAO,EAAE,CAAC;IACZ,mGAAmG;IACnG,IAAI,IAAI,GAAG,CAAC,CAAC;IACb,OAAO,MAAM,CAAC,QAAQ,CAAC,gBAAgB,CAAC,EAAE,CAAC;QACzC,MAAM,kBAAkB,GAAG,IAAI,CAAC,QAAQ,EAAE,CAAC,MAAM,CAAC;QAClD,MAAM,cAAc,GAAG,IAAI,KAAK,CAAC,kBAAkB,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC;aACzD,MAAM,CAAC,CAAC,GAAW,EAAE,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,GAAG,GAAG,MAAM,CAAC,MAAM,CAAC,MAAM,CAAC,MAAM,GAAG,kBAAkB,GAAG,CAAC,GAAG,gBAAgB,CAAC,MAAM,CAAC,EAAE,EAAE,CAAC,CAAC;QAC5H,MAAM,YAAY,GAAG,GAAG,iCAAiC,GAAG,cAAc,EAAE,CAAC;QAC7E,MAAM,YAAY,GAAuB,CAAC,MAAM,IAAI,CAAC,YAAY,CAAC,QAAQ,CAAC,gBAAgB,EAAE,YAAY,EAAE,IAAI,CAAC,CAAC,IAAI,EAAE,CAAC;QACxH,MAAM,GAAG,MAAM,CAAC,KAAK,CAAC,CAAC,EAAE,MAAM,CAAC,MAAM,GAAG,gBAAgB,CAAC,MAAM,GAAG,cAAc,CAAC,MAAM,CAAC,GAAG,YAAY,CAAC;QACzG,IAAI,EAAE,CAAC;IACT,CAAC;IACD,IAAI,CAAC;QACH,OAAO,IAAI,CAAC,KAAK,CAAC,MAAM,CAAC,CAAC;IAC5B,CAAC;IAAC,OAAO,GAAG,EAAE,CAAC;QACb,OAAO,CAAC,KAAK,CAAC,mEAAmE,GAAG,EAAE,CAAC,CAAC;QACxF,OAAO,EAAE,CAAC;IACZ,CAAC;AAEH,CAAC;AAED,KAAK,UAAU,qBAAqB,CAAC,KAA2C;IAC9E,MAAM,QAAQ,GAAW,IAAI,CAAC,SAAS,CAAC,KAAK,CAAC,CAAC;IAC/C,MAAM,WAAW,GAAG,IAAI,CAAC,IAAI,CAAC,QAAQ,CAAC,MAAM,GAAG,+BAA+B,CAAC,CAAC;IACjF,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,WAAW,EAAE,CAAC,EAAE,EAAE,CAAC;QACrC,MAAM,GAAG,GAAG,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,iCAAiC,CAAC,CAAC,CAAC,GAAG,iCAAiC,GAAG,CAAC,EAAE,CAAC;QACrG,MAAM,OAAO,GAAG,CAAC,GAAG,WAAW,GAAG,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC,CAAC,EAAE,CAAC;QACtD,MAAM,QAAQ,GAAG,QAAQ,CAAC,KAAK,CAAC,CAAC,GAAG,+BAA+B,EAAE,CAAC,CAAC,GAAG,CAAC,CAAC,GAAG,+BAA+B,CAAC,CAAC;QAChH,MAAM,eAAe,GAAG,OAAO,CAAC,CAAC,CAAC,QAAQ,GAAG,OAAO,GAAG,gBAAgB,CAAC,CAAC,CAAC,QAAQ,CAAC;QACnF,MAAM,IAAI,CAAC,YAAY,CAAC,GAAG,CAAC,gBAAgB,EAAE,GAAG,EAAE,eAAe,EAAE,IAAI,CAAC,CAAC;IAC5E,CAAC;AACH,CAAC;AAED,IAAI,sBAAsB,GAAkB,OAAO,CAAC,OAAO,EAAE,CAAC;AAE9D,MAAM,CAAC,KAAK,UAAU,kBAAkB;IACtC,IAAI,GAAoB,CAAC;IACzB,sBAAsB,GAAG,sBAAsB,CAAC,IAAI,CAAC,KAAK,IAAI,EAAE;QAC9D,MAAM,MAAM,GAAuB,MAAM,IAAI,CAAC,YAAY,CAAC,QAAQ,CAAC,gBAAgB,EAAE,gBAAgB,EAAE,IAAI,CAAC,CAAC;QAC9G,GAAG,GAAG,MAAM,CAAC,CAAC,CAAC,IAAI,CAAC,KAAK,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,EAAC,OAAO,EAAE,EAAE,EAAE,QAAQ,EAAE,EAAE,EAAE,2BAA2B,EAAE,EAAE,EAAC,CAAC;QACjG,MAAM,cAAc,GAAyC,MAAM,qBAAqB,EAAE,CAAC;QAC3F,yEAAyE;QACzE,GAAG,CAAC,OAAO,GAAG,GAAG,CAAC,OAAO,YAAY,KAAK,CAAC,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC,CAAC,EAAE,CAAC;QAC9D,GAAG,CAAC,QAAQ,GAAG,GAAG,CAAC,QAAQ,YAAY,KAAK,CAAC,CAAC,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC,CAAC,EAAE,CAAC;QACjE,GAAG,CAAC,2BAA2B,GAAG,GAAG,CAAC,2BAA2B,YAAY,MAAM,CAAC,CAAC;YACnF,GAAG,CAAC,2BAA2B,CAAC,CAAC,CAAC,EAAE,CAAC;QAEvC,oCAAoC;QACpC,KAAK,MAAM,WAAW,IAAI,cAAc,EAAE,CAAC;YACzC,GAAG,CAAC,2BAA2B,CAAC,WAAW,CAAC,GAAG,GAAG,CAAC,2BAA2B,CAAC,WAAW,CAAC,IAAI,EAAE,CAAC;YAClG,KAAK,MAAM,WAAW,IAAI,cAAc,CAAC,WAAW,CAAC,EAAE,CAAC;gBACtD,KAAK,MAAM,aAAa,IAAI,cAAc,CAAC,WAAW,CAAC,CAAC,WAAW,CAAC;oBAClE,GAAG,CAAC,2BAA2B,CAAC,WAAW,CAAC,CAAC,aAAa,CAAC,GAAG,WAAW,CAAC;YAC9E,CAAC;QACH,CAAC;QACD,oFAAoF;IACtF,CAAC,CAAC,CAAC;IACH,MAAM,sBAAsB,CAAC;IAC7B,OAAO,GAAI,CAAC;AACd,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,kBAAkB,CAAC,KAAsB;IAC7D,sBAAsB,GAAG,sBAAsB,CAAC,IAAI,CAAC,KAAK,IAAI,EAAE;QAC9D,KAAK,CAAC,2BAA2B,GAAG,KAAK,CAAC,2BAA2B,IAAI,EAAE,CAAC;QAC5E,sFAAsF;QACtF,qDAAqD;QACrD,MAAM,uBAAuB,GAAyC,EAAE,CAAC;QACzE,KAAK,MAAM,WAAW,IAAI,KAAK,CAAC,2BAA2B,EAAE,CAAC;YAC5D,uBAAuB,CAAC,WAAW,CAAC,GAAG,EAAE,CAAC;YAC1C,KAAK,MAAM,aAAa,IAAI,KAAK,CAAC,2BAA2B,CAAC,WAAW,CAAC,EAAE,CAAC;gBAC3E,MAAM,WAAW,GAAG,KAAK,CAAC,2BAA2B,CAAC,WAAW,CAAC,CAAC,aAAa,CAAC,CAAC;gBAClF,uBAAuB,CAAC,WAAW,CAAC,CAAC,WAAW,CAAC,GAAG,uBAAuB,CAAC,WAAW,CAAC,CAAC,WAAW,CAAC,IAAI,EAAE,CAAC;gBAC5G,uBAAuB,CAAC,WAAW,CAAC,CAAC,WAAW,CAAC,CAAC,IAAI,CAAC,aAAa,CAAC,CAAC;YACxE,CAAC;QACH,CAAC;QACD,MAAM,qBAAqB,CAAC,uBAAuB,CAAC,CAAC;QACrD,kIAAkI;QAClI,MAAM,IAAI,CAAC,YAAY,CAAC,GAAG,CAAC,gBAAgB,EAAE,gBAAgB,EAAE,IAAI,CAAC,SAAS,CAAC,KAAK,CAAC,EAAE,IAAI,CAAC,CAAC;IAC/F,CAAC,CAAC,CAAC;IACH,MAAM,sBAAsB,CAAC;AAC/B,CAAC"}