@datagrok-libraries/bio 5.9.1 → 5.9.4

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
package/package.json CHANGED
@@ -4,7 +4,7 @@
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  "access": "public"
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  },
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  "friendlyName": "Datagrok bio library",
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- "version": "5.9.1",
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+ "version": "5.9.4",
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  "description": "",
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  "dependencies": {
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  "@datagrok-libraries/utils": "^1.10.1",
@@ -1 +1 @@
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- {"version":3,"file":"monomer-works.d.ts","sourceRoot":"","sources":["monomer-works.ts"],"names":[],"mappings":"AAIA,OAAO,EAAC,WAAW,EAAE,OAAO,EAAC,MAAM,SAAS,CAAC;AAI7C,qBAAa,YAAY;IACvB,UAAU,EAAE,WAAW,CAAC;gBAEZ,UAAU,EAAE,WAAW;IAK5B,gBAAgB,CAAC,WAAW,EAAE,MAAM,EAAE,WAAW,EAAE,MAAM,GAAG,OAAO,GAAG,IAAI;CAQlF"}
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+ {"version":3,"file":"monomer-works.d.ts","sourceRoot":"","sources":["monomer-works.ts"],"names":[],"mappings":"AAIA,OAAO,EAAC,WAAW,EAAE,OAAO,EAAC,MAAM,SAAS,CAAC;AAI7C,qBAAa,YAAY;IACvB,UAAU,EAAE,WAAW,CAAC;gBAEZ,UAAU,EAAE,WAAW;IAK5B,gBAAgB,CAAC,WAAW,EAAE,MAAM,EAAE,WAAW,EAAE,MAAM,GAAG,OAAO,GAAG,IAAI;CAIlF"}
@@ -4,11 +4,8 @@ export class MonomerWorks {
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  }
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  //types according to Monomer possible
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  getCappedMonomer(monomerType, monomerName) {
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- const types = Object.keys(this.monomerLib);
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- if (!types.includes(monomerType))
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- throw '';
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- //return capTheMonomer(this.monomerLib!.get(type, name));
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- return this.monomerLib.get(monomerType, monomerName);
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+ //TODO
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+ return null;
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  }
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  }
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- //# sourceMappingURL=data:application/json;base64,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+ //# sourceMappingURL=data:application/json;base64,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
@@ -10,17 +10,33 @@ export interface NodeCuttedType extends NodeType {
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  cuttedChildren?: NodeType[];
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  }
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  export declare type Monomer = {
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- at: {
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- [R: string]: string;
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+ symbol: string;
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+ name: string;
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+ naturalAnalog: string;
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+ molfile: string;
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+ polymerType: string;
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+ monomerType: string;
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+ rgroups: {
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+ capGroupSmiles: string;
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+ alternateId: string;
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+ capGroupName: string;
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+ label: string;
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+ }[];
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+ data: {
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+ [property: string]: any;
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  };
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- id: string;
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- m: string;
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- n: string;
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- na: string;
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- rs: number;
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  };
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  export interface IMonomerLib {
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- get(monomerType: string, monomerName: string): Monomer | null;
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+ getMonomer(monomerType: string, monomerName: string): Monomer | null;
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+ getMonomersByType(type: string): {
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+ [symbol: string]: string;
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+ } | null;
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+ getTypes(): string[];
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+ update(monomers: {
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+ [type: string]: {
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+ [name: string]: Monomer;
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+ };
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+ }): void;
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  get onChanged(): Observable<any>;
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  }
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  //# sourceMappingURL=index.d.ts.map
@@ -1 +1 @@
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- {"version":3,"file":"index.d.ts","sourceRoot":"","sources":["index.ts"],"names":[],"mappings":"AAEA,OAAO,EAAC,UAAU,EAAC,MAAM,MAAM,CAAC;AAIhC,MAAM,WAAW,QAAQ;IACvB,IAAI,EAAE,MAAM,CAAC;IACb,aAAa,CAAC,EAAE,MAAM,CAAC;IACvB,QAAQ,CAAC,EAAE,QAAQ,EAAE,CAAC;CACvB;AAED,wBAAgB,MAAM,CAAC,IAAI,EAAE,QAAQ,WAEpC;AAED,MAAM,WAAW,cAAe,SAAQ,QAAQ;IAC9C,kBAAkB,EAAE,MAAM,EAAE,CAAC;IAC7B,cAAc,CAAC,EAAE,QAAQ,EAAE,CAAC;CAC7B;AAED,oBAAY,OAAO,GAAG;IACpB,EAAE,EAAE;QAAE,CAAC,CAAC,EAAE,MAAM,GAAG,MAAM,CAAA;KAAE,CAAC;IAC5B,EAAE,EAAE,MAAM,CAAC;IACX,CAAC,EAAE,MAAM,CAAC;IACV,CAAC,EAAE,MAAM,CAAC;IACV,EAAE,EAAE,MAAM,CAAC;IACX,EAAE,EAAE,MAAM,CAAC;CACZ,CAAA;AAGD,MAAM,WAAW,WAAW;IAC1B,GAAG,CAAC,WAAW,EAAE,MAAM,EAAE,WAAW,EAAE,MAAM,GAAG,OAAO,GAAG,IAAI,CAAC;IAG9D,IAAI,SAAS,IAAI,UAAU,CAAC,GAAG,CAAC,CAAC;CAClC"}
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+ {"version":3,"file":"index.d.ts","sourceRoot":"","sources":["index.ts"],"names":[],"mappings":"AAEA,OAAO,EAAC,UAAU,EAAC,MAAM,MAAM,CAAC;AAIhC,MAAM,WAAW,QAAQ;IACvB,IAAI,EAAE,MAAM,CAAC;IACb,aAAa,CAAC,EAAE,MAAM,CAAC;IACvB,QAAQ,CAAC,EAAE,QAAQ,EAAE,CAAC;CACvB;AAED,wBAAgB,MAAM,CAAC,IAAI,EAAE,QAAQ,WAEpC;AAED,MAAM,WAAW,cAAe,SAAQ,QAAQ;IAC9C,kBAAkB,EAAE,MAAM,EAAE,CAAC;IAC7B,cAAc,CAAC,EAAE,QAAQ,EAAE,CAAC;CAC7B;AAED,oBAAY,OAAO,GAAG;IACpB,MAAM,EAAE,MAAM,CAAC;IACf,IAAI,EAAE,MAAM,CAAC;IACb,aAAa,EAAE,MAAM,CAAC;IACtB,OAAO,EAAE,MAAM,CAAC;IAChB,WAAW,EAAE,MAAM,CAAC;IACpB,WAAW,EAAE,MAAM,CAAC;IACpB,OAAO,EAAE;QAAC,cAAc,EAAE,MAAM,CAAC;QAAC,WAAW,EAAE,MAAM,CAAC;QAAC,YAAY,EAAE,MAAM,CAAC;QAAC,KAAK,EAAE,MAAM,CAAA;KAAE,EAAE,CAAC;IAC/F,IAAI,EAAE;QAAC,CAAC,QAAQ,EAAE,MAAM,GAAG,GAAG,CAAA;KAAC,CAAA;CAChC,CAAC;AAEF,MAAM,WAAW,WAAW;IAC1B,UAAU,CAAC,WAAW,EAAE,MAAM,EAAE,WAAW,EAAE,MAAM,GAAG,OAAO,GAAG,IAAI,CAAC;IACrE,iBAAiB,CAAC,IAAI,EAAE,MAAM,GAAG;QAAC,CAAC,MAAM,EAAE,MAAM,GAAG,MAAM,CAAA;KAAC,GAAG,IAAI,CAAC;IACnE,QAAQ,IAAI,MAAM,EAAE,CAAC;IACrB,MAAM,CAAC,QAAQ,EAAE;QAAE,CAAC,IAAI,EAAE,MAAM,GAAG;YAAE,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO,CAAA;SAAE,CAAA;KAAE,GAAG,IAAI,CAAC;IACxE,IAAI,SAAS,IAAI,UAAU,CAAC,GAAG,CAAC,CAAC;CAClC"}
@@ -2,4 +2,4 @@
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  export function isLeaf(node) {
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  return !node.children || node.children.length == 0;
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  }
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- //# sourceMappingURL=data:application/json;base64,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
5
+ //# sourceMappingURL=data:application/json;base64,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