@datagrok-libraries/bio 5.63.6 → 5.64.0

package/src/utils/macromolecule-highlight.js

@@ -0,0 +1,87 @@
+import * as grok from 'datagrok-api/grok';
+import * as DG from 'datagrok-api/dg';
+/** Custom event id for toggling monomer highlights in macromolecule grid cells (HELM renderer
+ *  and generic sequence renderer). Payload: {@link MacromoleculeHighlightEventArgs}. Fire via
+ *  {@link grok.events.fireCustomEvent} or the convenience helpers in this module. */
+export const MACROMOLECULE_HIGHLIGHT_EVENT_ID = 'bio-macromolecule-monomer-highlight';
+/** Slot name on `column.temp` where per-row monomer highlights are stored by the macromolecule
+ *  cell renderers. Shape: `Map<rowIdx, MacromoleculeHighlightEntry>`. */
+export const MACROMOLECULE_HIGHLIGHT_TEMP = 'bio.macromolecule.highlightMonomers';
+/** Forced alpha (0..1) applied to every highlight color — solid colors are not allowed. */
+export const MACROMOLECULE_HIGHLIGHT_ALPHA = 0.4;
+/** Default fill color (translucent yellow) as a DG.Color ARGB int. The alpha component of the
+ *  input is ignored by the renderer and replaced with {@link MACROMOLECULE_HIGHLIGHT_ALPHA}. */
+export const DEFAULT_MACROMOLECULE_HIGHLIGHT_FILL = DG.Color.argb(255, 255, 220, 0);
+/** Default stroke color (amber) as a DG.Color ARGB int. */
+export const DEFAULT_MACROMOLECULE_HIGHLIGHT_STROKE = DG.Color.argb(255, 230, 140, 0);
+/** Converts a DG.Color ARGB int to an `rgba(r,g,b,alpha)` CSS string. The input's alpha is
+ *  discarded — the fixed {@link MACROMOLECULE_HIGHLIGHT_ALPHA} is used unless an explicit
+ *  override is passed (renderers may use a smaller alpha for backgrounds). */
+export function macromoleculeHighlightColorToCss(color, alpha) {
+    return `rgba(${DG.Color.r(color)},${DG.Color.g(color)},${DG.Color.b(color)},${alpha ?? MACROMOLECULE_HIGHLIGHT_ALPHA})`;
+}
+function resolveTarget(t) {
+    const columnName = t.columnName ?? t.column?.name;
+    if (!columnName)
+        throw new Error('MacromoleculeHighlight: columnName (or column) must be provided.');
+    const tableName = t.tableName ?? t.table?.name;
+    const tableId = t.tableId ?? t.table?.id;
+    return { tableName, tableId, columnName };
+}
+/** Fires the macromolecule highlight event. Updates on the renderer side are applied
+ *  asynchronously via the platform's custom-event bus; visible cells in the target column will
+ *  be repainted. */
+export function fireMacromoleculeHighlight(args) {
+    grok.events.fireCustomEvent(MACROMOLECULE_HIGHLIGHT_EVENT_ID, args);
+}
+/** Highlight the given monomers in a single row. Replaces any previous highlight for that row.
+ *  Optional `colors` override the defaults. */
+export function setMacromoleculeMonomerHighlight(target, rowIdx, monomers, colors) {
+    const { tableName, tableId, columnName } = resolveTarget(target);
+    fireMacromoleculeHighlight({
+        tableName, tableId, columnName, rowIdx, monomers,
+        fillColor: colors?.fillColor, strokeColor: colors?.strokeColor,
+    });
+}
+/** Clear the highlight for a single row. */
+export function clearMacromoleculeMonomerHighlight(target, rowIdx) {
+    const { tableName, tableId, columnName } = resolveTarget(target);
+    fireMacromoleculeHighlight({ tableName, tableId, columnName, rowIdx, monomers: null });
+}
+/** Set highlights for many rows at once. Each value is either `null` (clear that row), an
+ *  array of monomer indices (use default colors), or `{monomers, fillColor?, strokeColor?}`. */
+export function setMacromoleculeMonomerHighlights(target, rowHighlights) {
+    const { tableName, tableId, columnName } = resolveTarget(target);
+    const entries = rowHighlights instanceof Map ?
+        Array.from(rowHighlights.entries()) :
+        Object.entries(rowHighlights).map(([k, v]) => [Number(k), v]);
+    for (const [rowIdx, spec] of entries) {
+        if (spec == null) {
+            fireMacromoleculeHighlight({ tableName, tableId, columnName, rowIdx, monomers: null });
+        }
+        else if (Array.isArray(spec)) {
+            fireMacromoleculeHighlight({ tableName, tableId, columnName, rowIdx, monomers: spec });
+        }
+        else {
+            fireMacromoleculeHighlight({
+                tableName, tableId, columnName, rowIdx,
+                monomers: spec.monomers, fillColor: spec.fillColor, strokeColor: spec.strokeColor,
+            });
+        }
+    }
+}
+/** Clears all highlights stored on the column by re-firing a clear event for every currently-
+ *  highlighted row. */
+export function clearAllMacromoleculeMonomerHighlights(target) {
+    const { tableName, tableId, columnName } = resolveTarget(target);
+    const col = target.column ?? target.table?.columns.byName(columnName);
+    if (!col)
+        return;
+    const map = col.temp[MACROMOLECULE_HIGHLIGHT_TEMP];
+    if (!map || map.size === 0)
+        return;
+    const rows = Array.from(map.keys());
+    for (const rowIdx of rows)
+        fireMacromoleculeHighlight({ tableName, tableId, columnName, rowIdx, monomers: null });
+}
+//# sourceMappingURL=macromolecule-highlight.js.map

package/src/utils/macromolecule-highlight.js.map

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package/src/utils/monomer-selection-dialog.js

@@ -91,7 +91,7 @@ export class MonomerSelectionWidget {
                     this.renderTags();
                     this.updateCountLabel();
                 }
-            });
+            }, 'Remove');
             removeBtn.style.marginLeft = '4px';
             removeBtn.style.cursor = 'pointer';
             const tag = ui.div([ui.span([symbol]), removeBtn], {

package/src/utils/monomer-selection-dialog.js.map

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