@datagrok-libraries/bio 5.61.5 → 5.62.0

package/package.json

@@ -8,7 +8,7 @@
     "access": "public"
   },
   "friendlyName": "Datagrok bio library",
-  "version": "5.61.5",
+  "version": "5.62.0",
   "description": "Bio utilities, types supporting Macromolecule, Molecule3D data",
   "dependencies": {
     "@datagrok-libraries/chem-meta": "^1.2.7",

package/src/types/monomer-library.d.ts

@@ -162,7 +162,20 @@ export interface IMonomerLibHelper {
     notifyLibrarySelectionChanged(): void;
     /** Use default file provider to read monomer library. just a shorthand */
     readLibraryFromFilePath(filePath: string): Promise<IMonomerLib>;
+    /** List simple monomer collections and returns their file names. collections should be json files */
+    listMonomerCollections(): Promise<string[]>;
+    /** reads single collection and returns monomer symbols in it . name should be extention qualified*/
+    readMonomerCollection(collectionName: string): Promise<MonomerCollection>;
+    /** add or update monomer collecion */
+    addOrUpdateMonomerCollection(collectionName: string, monomerSymbols: string[], description?: string): Promise<void>;
+    deleteMonomerCollection(collectionName: string): Promise<void>;
 }
+export type MonomerCollection = {
+    description?: string;
+    monomerSymbols: string[];
+    updatedBy: string;
+    updatedOn: string;
+};
 export declare function getMonomerLibHelper(): Promise<IMonomerLibHelper>;
 export declare class MonomerSetPlaceholder implements IMonomerSetPlaceholder {
     private readonly monomerLib;

package/src/types/monomer-library.d.ts.map

@@ -1 +1 @@
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package/src/types/monomer-library.js.map

@@ -1 +1 @@
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package/src/utils/macromolecule/types.d.ts.map

@@ -1 +1 @@
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package/src/utils/macromolecule/types.js

@@ -1,4 +1,3 @@
-import * as DG from 'datagrok-api/dg';
 import { NOTATION_PROVIDER_CONSTRUCTOR_ROLE } from './consts';
 export class NotationProviderBase {
     /** Name of the custom notation */
@@ -17,8 +16,14 @@ export class NotationProviderBase {
     }
     ;
     static async getProviderConstructors() {
-        const constFuncs = DG.Func.find({ meta: { role: NOTATION_PROVIDER_CONSTRUCTOR_ROLE } });
-        return Promise.all(constFuncs.map((f) => f.apply({})));
+        // this is terrible, I know, but otherwise this gets put in webworkers and fails due to DG resolution)))
+        // @ts-ignore
+        if (window?.DG) {
+            // @ts-ignore
+            const constFuncs = window.DG.Func.find({ meta: { role: NOTATION_PROVIDER_CONSTRUCTOR_ROLE } });
+            return Promise.all(constFuncs.map((f) => f.apply({})));
+        }
+        return [];
     }
 }
 /** Alphabet candidate type */

package/src/utils/macromolecule/types.js.map

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