@datagrok-libraries/bio 5.6.0 → 5.7.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/index.d.ts +3 -3
- package/index.d.ts.map +1 -1
- package/index.js +4 -3
- package/index.ts +5 -2
- package/package.json +1 -1
- package/src/consts/index.d.ts +0 -5
- package/src/consts/index.d.ts.map +1 -1
- package/src/consts/index.js +11 -7
- package/src/types/index.d.ts +13 -5
- package/src/types/index.d.ts.map +1 -1
- package/src/types/index.js +15 -2
package/index.d.ts
CHANGED
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@@ -1,9 +1,9 @@
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1
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-
import { PhylocanvasTreeNode, Newick, Utils, PhylocanvasGL } from '@phylocanvas/phylocanvas.gl';
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+
import { PhylocanvasTreeNode, Newick, Utils, PhylocanvasGL, Shapes, TreeTypes } from '@phylocanvas/phylocanvas.gl';
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import { Aminoacids, AminoacidsPalettes } from './src/aminoacids';
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import { MonomerWorks } from './src/monomer-works';
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import { Nucleotides, NucleotidesPalettes } from './src/nucleotides';
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import { SeqPalette, SeqPaletteBase } from './src/seq-palettes';
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import { IMonomerLib, Monomer } from './src/types';
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import { IMonomerLib, INode, Node, Monomer, isLeaf } from './src/types';
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import { UnknownSeqPalette, UnknownSeqPalettes } from './src/unknown';
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import { DrawStyle, printLeftOrCentered } from './src/utils/cell-renderer';
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import { FastaFileHandler } from './src/utils/fasta-handler';
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@@ -17,5 +17,5 @@ import { VdRegion, VdRegionType } from './src/vd-regions';
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import { IPhylocanvasGlViewer, NodeStyleType, StylesType } from './src/viewers/phylocanvas-gl-viewer';
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import { IVdRegionsViewer } from './src/viewers/vd-regions-viewer';
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import { PositionHeight, PositionInfo, PositionMonomerInfo, WebLogoViewer } from './src/viewers/web-logo-viewer';
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-
export { ALIGNMENT, ALPHABET, NOTATION, TAGS, NotationConverter, SplitterFunc, getStats, getAlphabetSimilarity, getSplitter, splitterAsFasta, splitterAsHelm, getSplitterForColumn, monomerToShort, splitAlignedSequences, SeqPalette, SeqPaletteBase, Aminoacids, AminoacidsPalettes, Nucleotides, NucleotidesPalettes, UnknownSeqPalettes, UnknownSeqPalette, pickUpPalette, getPaletteByType, PositionHeight, PositionInfo, PositionMonomerInfo, WebLogoViewer, UnitsHandler, DrawStyle, printLeftOrCentered, FastaFileHandler, VdRegionType, VdRegion, IVdRegionsViewer, PhylocanvasTreeNode, NodeStyleType, StylesType, IPhylocanvasGlViewer, PhylocanvasGL, Utils, Newick, INewickHelper, Monomer, IMonomerLib, getMonomerLib, MonomerWorks, };
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export { ALIGNMENT, ALPHABET, NOTATION, TAGS, NotationConverter, SplitterFunc, getStats, getAlphabetSimilarity, getSplitter, splitterAsFasta, splitterAsHelm, getSplitterForColumn, monomerToShort, splitAlignedSequences, SeqPalette, SeqPaletteBase, Aminoacids, AminoacidsPalettes, Nucleotides, NucleotidesPalettes, UnknownSeqPalettes, UnknownSeqPalette, pickUpPalette, getPaletteByType, PositionHeight, PositionInfo, PositionMonomerInfo, WebLogoViewer, UnitsHandler, DrawStyle, printLeftOrCentered, FastaFileHandler, VdRegionType, VdRegion, IVdRegionsViewer, INode, Node, isLeaf, PhylocanvasTreeNode, NodeStyleType, StylesType, IPhylocanvasGlViewer, PhylocanvasGL, Shapes, TreeTypes, Utils, Newick, INewickHelper, Monomer, IMonomerLib, getMonomerLib, MonomerWorks, };
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//# sourceMappingURL=index.d.ts.map
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package/index.d.ts.map
CHANGED
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@@ -1 +1 @@
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-
{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["index.ts"],"names":[],"mappings":"AACA,OAAO,EAAC,mBAAmB,EAAE,MAAM,EAAE,KAAK,EAAE,aAAa,EAAC,MAAM,6BAA6B,CAAC;
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{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["index.ts"],"names":[],"mappings":"AACA,OAAO,EAAC,mBAAmB,EAAE,MAAM,EAAE,KAAK,EAAE,aAAa,EAAE,MAAM,EAAE,SAAS,EAAC,MAAM,6BAA6B,CAAC;AAEjH,OAAO,EAAC,UAAU,EAAE,kBAAkB,EAAC,MAAM,kBAAkB,CAAC;AAChE,OAAO,EAAC,YAAY,EAAC,MAAM,qBAAqB,CAAC;AACjD,OAAO,EAAC,WAAW,EAAE,mBAAmB,EAAC,MAAM,mBAAmB,CAAC;AACnE,OAAO,EAAC,UAAU,EAAE,cAAc,EAAC,MAAM,oBAAoB,CAAC;AAC9D,OAAO,EAAC,WAAW,EAAE,KAAK,EAAE,IAAI,EAAE,OAAO,EAAE,MAAM,EAAC,MAAM,aAAa,CAAC;AACtE,OAAO,EAAC,iBAAiB,EAAE,kBAAkB,EAAC,MAAM,eAAe,CAAC;AACpE,OAAO,EAAC,SAAS,EAAE,mBAAmB,EAAC,MAAM,2BAA2B,CAAC;AACzE,OAAO,EAAC,gBAAgB,EAAC,MAAM,2BAA2B,CAAC;AAC3D,OAAO,EACL,WAAW,EACX,eAAe,EACf,oBAAoB,EACpB,YAAY,EACZ,cAAc,EACd,cAAc,EACd,QAAQ,EACR,aAAa,EACb,gBAAgB,EAChB,qBAAqB,EACrB,QAAQ,EACR,QAAQ,EACR,IAAI,EACJ,SAAS,EACV,MAAM,2BAA2B,CAAC;AACnC,OAAO,EAAC,aAAa,EAAC,MAAM,yBAAyB,CAAC;AACtD,OAAO,EAAC,aAAa,EAAC,MAAM,2BAA2B,CAAC;AACxD,OAAO,EAAC,iBAAiB,EAAC,MAAM,gCAAgC,CAAC;AACjE,OAAO,EAAC,qBAAqB,EAAC,MAAM,sBAAsB,CAAC;AAC3D,OAAO,EAAC,YAAY,EAAC,MAAM,2BAA2B,CAAC;AACvD,OAAO,EAAC,QAAQ,EAAE,YAAY,EAAC,MAAM,kBAAkB,CAAC;AACxD,OAAO,EAAC,oBAAoB,EAAE,aAAa,EAAE,UAAU,EAAC,MAAM,qCAAqC,CAAC;AACpG,OAAO,EAAC,gBAAgB,EAAC,MAAM,iCAAiC,CAAC;AACjE,OAAO,EAAC,cAAc,EAAE,YAAY,EAAE,mBAAmB,EAAE,aAAa,EAAC,MAAM,+BAA+B,CAAC;AAG/G,OAAO,EACL,SAAS,EACT,QAAQ,EACR,QAAQ,EACR,IAAI,EACJ,iBAAiB,EACjB,YAAY,EACZ,QAAQ,EACR,qBAAqB,EACrB,WAAW,EACX,eAAe,EACf,cAAc,EACd,oBAAoB,EACpB,cAAc,EACd,qBAAqB,EACrB,UAAU,EACV,cAAc,EACd,UAAU,EACV,kBAAkB,EAClB,WAAW,EACX,mBAAmB,EACnB,kBAAkB,EAClB,iBAAiB,EACjB,aAAa,EACb,gBAAgB,EAChB,cAAc,EACd,YAAY,EACZ,mBAAmB,EACnB,aAAa,EACb,YAAY,EACZ,SAAS,EACT,mBAAmB,EACnB,gBAAgB,EAChB,YAAY,EACZ,QAAQ,EACR,gBAAgB,EAEhB,KAAK,EAAE,IAAI,EAAE,MAAM,EACnB,mBAAmB,EACnB,aAAa,EAAE,UAAU,EACzB,oBAAoB,EACpB,aAAa,EACb,MAAM,EAAE,SAAS,EACjB,KAAK,EACL,MAAM,EACN,aAAa,EAEb,OAAO,EACP,WAAW,EACX,aAAa,EACb,YAAY,GACb,CAAC"}
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package/index.js
CHANGED
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@@ -1,9 +1,10 @@
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//@ts-ignore
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-
import { Newick, Utils, PhylocanvasGL } from '@phylocanvas/phylocanvas.gl';
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import { Newick, Utils, PhylocanvasGL, Shapes, TreeTypes } from '@phylocanvas/phylocanvas.gl';
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import { Aminoacids, AminoacidsPalettes } from './src/aminoacids';
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import { MonomerWorks } from './src/monomer-works';
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import { Nucleotides, NucleotidesPalettes } from './src/nucleotides';
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import { SeqPaletteBase } from './src/seq-palettes';
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import { Node, isLeaf } from './src/types';
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import { UnknownSeqPalette, UnknownSeqPalettes } from './src/unknown';
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import { DrawStyle, printLeftOrCentered } from './src/utils/cell-renderer';
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import { FastaFileHandler } from './src/utils/fasta-handler';
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@@ -14,5 +15,5 @@ import { splitAlignedSequences } from './src/utils/splitter';
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import { UnitsHandler } from './src/utils/units-handler';
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import { VdRegion, VdRegionType } from './src/vd-regions';
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import { PositionHeight, PositionInfo, PositionMonomerInfo, WebLogoViewer } from './src/viewers/web-logo-viewer';
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export { NotationConverter, getStats, getAlphabetSimilarity, getSplitter, splitterAsFasta, splitterAsHelm, getSplitterForColumn, monomerToShort, splitAlignedSequences, SeqPaletteBase, Aminoacids, AminoacidsPalettes, Nucleotides, NucleotidesPalettes, UnknownSeqPalettes, UnknownSeqPalette, pickUpPalette, getPaletteByType, PositionHeight, PositionInfo, PositionMonomerInfo, WebLogoViewer, UnitsHandler, DrawStyle, printLeftOrCentered, FastaFileHandler, VdRegionType, VdRegion, PhylocanvasGL, Utils, Newick, getMonomerLib, MonomerWorks, };
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//# sourceMappingURL=data:application/json;base64,
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export { NotationConverter, getStats, getAlphabetSimilarity, getSplitter, splitterAsFasta, splitterAsHelm, getSplitterForColumn, monomerToShort, splitAlignedSequences, SeqPaletteBase, Aminoacids, AminoacidsPalettes, Nucleotides, NucleotidesPalettes, UnknownSeqPalettes, UnknownSeqPalette, pickUpPalette, getPaletteByType, PositionHeight, PositionInfo, PositionMonomerInfo, WebLogoViewer, UnitsHandler, DrawStyle, printLeftOrCentered, FastaFileHandler, VdRegionType, VdRegion, Node, isLeaf, PhylocanvasGL, Shapes, TreeTypes, Utils, Newick, getMonomerLib, MonomerWorks, };
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//# sourceMappingURL=data:application/json;base64,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package/index.ts
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//@ts-ignore
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import {PhylocanvasTreeNode, Newick, Utils, PhylocanvasGL} from '@phylocanvas/phylocanvas.gl';
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import {PhylocanvasTreeNode, Newick, Utils, PhylocanvasGL, Shapes, TreeTypes} from '@phylocanvas/phylocanvas.gl';
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import {Aminoacids, AminoacidsPalettes} from './src/aminoacids';
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import {MonomerWorks} from './src/monomer-works';
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import {Nucleotides, NucleotidesPalettes} from './src/nucleotides';
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import {SeqPalette, SeqPaletteBase} from './src/seq-palettes';
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import {IMonomerLib, Monomer} from './src/types';
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import {IMonomerLib, INode, Node, Monomer, isLeaf} from './src/types';
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import {UnknownSeqPalette, UnknownSeqPalettes} from './src/unknown';
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import {DrawStyle, printLeftOrCentered} from './src/utils/cell-renderer';
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import {FastaFileHandler} from './src/utils/fasta-handler';
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@@ -72,10 +72,13 @@ export {
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72
72
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VdRegionType,
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73
73
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VdRegion,
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74
74
|
IVdRegionsViewer,
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75
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+
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76
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+
INode, Node, isLeaf,
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75
77
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PhylocanvasTreeNode,
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76
78
|
NodeStyleType, StylesType,
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77
79
|
IPhylocanvasGlViewer,
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78
80
|
PhylocanvasGL,
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81
|
+
Shapes, TreeTypes,
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79
82
|
Utils,
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80
83
|
Newick,
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81
84
|
INewickHelper,
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package/package.json
CHANGED
package/src/consts/index.d.ts
CHANGED
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@@ -1 +1 @@
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1
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-
{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["index.ts"],"names":[],"mappings":"
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1
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+
{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["index.ts"],"names":[],"mappings":""}
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package/src/consts/index.js
CHANGED
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@@ -1,7 +1,11 @@
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1
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-
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2
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-
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3
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-
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4
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-
//@ts-ignore
|
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5
|
-
const
|
|
6
|
-
|
|
7
|
-
|
|
1
|
+
"use strict";
|
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2
|
+
// import * as pcgl from '@phylocanvas/phylocanvas.gl';
|
|
3
|
+
//
|
|
4
|
+
// //@ts-ignore
|
|
5
|
+
// const Shapes = pcgl.Shapes;
|
|
6
|
+
//
|
|
7
|
+
// //@ts-ignore
|
|
8
|
+
// const TreeTypes = pcgl.TreeTypes;
|
|
9
|
+
//
|
|
10
|
+
// export {Shapes, TreeTypes};
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11
|
+
//# sourceMappingURL=data:application/json;base64,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
|
package/src/types/index.d.ts
CHANGED
|
@@ -1,11 +1,19 @@
|
|
|
1
1
|
import { Observable } from 'rxjs';
|
|
2
|
-
interface
|
|
2
|
+
export interface INode<TNode extends INode<TNode>> {
|
|
3
3
|
name: string;
|
|
4
|
-
|
|
5
|
-
|
|
6
|
-
|
|
4
|
+
branch_length?: number;
|
|
5
|
+
children: TNode[];
|
|
6
|
+
clone(): TNode;
|
|
7
|
+
}
|
|
8
|
+
export declare function isLeaf<TNode extends INode<TNode>>(node: TNode): boolean;
|
|
9
|
+
export declare class Node implements INode<Node> {
|
|
10
|
+
name: string;
|
|
11
|
+
children: Node[];
|
|
12
|
+
branch_length?: number;
|
|
13
|
+
constructor(name: string, branch_length?: number, children?: Node[]);
|
|
14
|
+
/** Shallow copy, copies children list but children itself remains reference to the same */
|
|
15
|
+
clone(): Node;
|
|
7
16
|
}
|
|
8
|
-
export { NodeType as NodeType };
|
|
9
17
|
export declare type Monomer = {
|
|
10
18
|
at: {
|
|
11
19
|
[R: string]: string;
|
package/src/types/index.d.ts.map
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["index.ts"],"names":[],"mappings":"AAEA,OAAO,EAAC,UAAU,EAAC,MAAM,MAAM,CAAC;AAEhC,
|
|
1
|
+
{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["index.ts"],"names":[],"mappings":"AAEA,OAAO,EAAC,UAAU,EAAC,MAAM,MAAM,CAAC;AAEhC,MAAM,WAAW,KAAK,CAAC,KAAK,SAAS,KAAK,CAAC,KAAK,CAAC;IAC/C,IAAI,EAAE,MAAM,CAAC;IACb,aAAa,CAAC,EAAE,MAAM,CAAC;IACvB,QAAQ,EAAE,KAAK,EAAE,CAAC;IAElB,KAAK,IAAI,KAAK,CAAC;CAChB;AAED,wBAAgB,MAAM,CAAC,KAAK,SAAS,KAAK,CAAC,KAAK,CAAC,EAAE,IAAI,EAAE,KAAK,WAE7D;AAGD,qBAAa,IAAK,YAAW,KAAK,CAAC,IAAI,CAAC;IACtC,IAAI,EAAE,MAAM,CAAC;IACb,QAAQ,EAAE,IAAI,EAAE,CAAC;IACjB,aAAa,CAAC,EAAE,MAAM,CAAC;gBAEX,IAAI,EAAE,MAAM,EAAE,aAAa,CAAC,EAAE,MAAM,EAAE,QAAQ,GAAE,IAAI,EAAO;IAMvE,2FAA2F;IAC3F,KAAK;CAGN;AAED,oBAAY,OAAO,GAAG;IACpB,EAAE,EAAE;QAAE,CAAC,CAAC,EAAE,MAAM,GAAG,MAAM,CAAA;KAAE,CAAC;IAC5B,EAAE,EAAE,MAAM,CAAC;IACX,CAAC,EAAE,MAAM,CAAC;IACV,CAAC,EAAE,MAAM,CAAC;IACV,EAAE,EAAE,MAAM,CAAC;IACX,EAAE,EAAE,MAAM,CAAC;CACZ,CAAA;AAGD,MAAM,WAAW,WAAW;IAC1B,GAAG,CAAC,WAAW,EAAE,MAAM,EAAE,WAAW,EAAE,MAAM,GAAG,OAAO,GAAG,IAAI,CAAC;IAG9D,IAAI,SAAS,IAAI,UAAU,CAAC,GAAG,CAAC,CAAC;CAClC"}
|
package/src/types/index.js
CHANGED
|
@@ -1,3 +1,16 @@
|
|
|
1
1
|
// import {NodeType} from '@phylocanvas/phylocanvas.gl';
|
|
2
|
-
export {
|
|
3
|
-
|
|
2
|
+
export function isLeaf(node) {
|
|
3
|
+
return !node.children || node.children.length == 0;
|
|
4
|
+
}
|
|
5
|
+
export class Node {
|
|
6
|
+
constructor(name, branch_length, children = []) {
|
|
7
|
+
this.name = name;
|
|
8
|
+
this.branch_length = branch_length;
|
|
9
|
+
this.children = children;
|
|
10
|
+
}
|
|
11
|
+
/** Shallow copy, copies children list but children itself remains reference to the same */
|
|
12
|
+
clone() {
|
|
13
|
+
return new Node(this.name, this.branch_length, [...this.children]);
|
|
14
|
+
}
|
|
15
|
+
}
|
|
16
|
+
//# sourceMappingURL=data:application/json;base64,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
|