@datagrok-libraries/bio 5.52.1 → 5.52.2
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/package.json +1 -1
- package/src/utils/cell-renderer-monomer-placer.d.ts.map +1 -1
- package/src/utils/cell-renderer-monomer-placer.js +5 -2
- package/src/utils/cell-renderer-monomer-placer.js.map +1 -1
- package/src/utils/cell-renderer.d.ts +1 -0
- package/src/utils/cell-renderer.d.ts.map +1 -1
- package/src/utils/cell-renderer.js +5 -0
- package/src/utils/cell-renderer.js.map +1 -1
- package/src/utils/macromolecule/consts.d.ts +2 -1
- package/src/utils/macromolecule/consts.d.ts.map +1 -1
- package/src/utils/macromolecule/consts.js +1 -0
- package/src/utils/macromolecule/consts.js.map +1 -1
- package/src/utils/sequence-position-scroller.d.ts +14 -1
- package/src/utils/sequence-position-scroller.d.ts.map +1 -1
- package/src/utils/sequence-position-scroller.js +145 -61
- package/src/utils/sequence-position-scroller.js.map +1 -1
package/package.json
CHANGED
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@@ -8,7 +8,7 @@
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"access": "public"
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},
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"friendlyName": "Datagrok bio library",
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-
"version": "5.52.
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11
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+
"version": "5.52.2",
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"description": "Bio utilities, types supporting Macromolecule, Molecule3D data",
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"dependencies": {
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"@datagrok-libraries/chem-meta": "^1.2.7",
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@@ -1 +1 @@
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1
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-
{"version":3,"file":"cell-renderer-monomer-placer.d.ts","sourceRoot":"","sources":["cell-renderer-monomer-placer.ts"],"names":[],"mappings":"
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1
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+
{"version":3,"file":"cell-renderer-monomer-placer.d.ts","sourceRoot":"","sources":["cell-renderer-monomer-placer.ts"],"names":[],"mappings":"AAIA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAKtC,OAAO,EAAW,kBAAkB,EAA0C,MAAM,iBAAiB,CAAC;AAEtG,OAAO,EAAC,oBAAoB,EAAqB,MAAM,2BAA2B,CAAC;AACnF,OAAO,EAAC,OAAO,EAAC,MAAM,UAAU,CAAC;AAKjC,OAAO,EAAC,eAAe,EAAC,MAAM,gBAAgB,CAAC;AAM/C,KAAK,kBAAkB,GAAG;IACxB,cAAc,EAAE,MAAM,CAAC;IACvB,cAAc,EAAE,kBAAkB,CAAC;IACnC,IAAI,EAAE,MAAM,CAAC;IAAC,aAAa,EAAE,MAAM,CAAC;CACrC,CAAC;AAEF,eAAO,MAAM,cAAc,qBAAqB,CAAC;AAEjD,eAAO,MAAM,sBAAsB,QAAQ,CAAC;AAE5C;mCACmC;AACnC,wBAAgB,SAAS,CAAC,MAAM,EAAE,MAAM,EAAE,EAAE,CAAC,EAAE,MAAM,EAAE,mBAAmB,CAAC,EAAE,MAAM,GAAG,MAAM,GAAG,IAAI,CAwBlG;AAED,qBAAa,aAAc,SAAQ,oBAAoB,CAAC,MAAM,CAAC;IAsBpD,kBAAkB,EAAE,MAAM;IACjC,OAAO,CAAC,QAAQ,CAAC,aAAa;IAtBhC,OAAO,CAAC,QAAQ,CAAa;IAC7B,OAAO,CAAC,kBAAkB,CAA2B;IAGrD,OAAO,KAAK,cAAc,GAAwE;IAC3F,KAAK,EAAE,kBAAkB,CAAC;IACjC,OAAO,CAAC,cAAc,CAAY;IAClC,OAAO,CAAC,6BAA6B,CAAa;IAE3C,iBAAiB,EAAE;QAAE,CAAC,GAAG,EAAE,MAAM,GAAG,WAAW,CAAA;KAAE,CAAM;IACvD,oBAAoB,EAAE;QAAE,CAAC,GAAG,EAAE,MAAM,GAAG,WAAW,CAAA;KAAE,CAAM;IAEjE,OAAO,CAAC,SAAS,CAAc;IAE/B,OAAO,CAAC,aAAa,CAAgC;IAErD,sEAAsE;gBAEpE,OAAO,EAAE,EAAE,CAAC,UAAU,GAAG,IAAI,EAC7B,QAAQ,EAAE,EAAE,CAAC,MAAM,CAAC,MAAM,CAAC,EAC3B,MAAM,EAAE,OAAO,EACR,kBAAkB,EAAE,MAAM,EAChB,aAAa,EAAE,MAAM,kBAAkB;IA+B7C,IAAI,IAAI,OAAO,CAAC,IAAI,CAAC;WAmBpB,eAAe,CAAC,QAAQ,CAAC,EAAE,EAAE,CAAC,MAAM;;;;IAWzC,KAAK,IAAI,MAAM;IAIxB,SAAS,CAAC,aAAa,IAAI,eAAe,GAAG,IAAI;cAI9B,KAAK,IAAI,IAAI;IAWhC,SAAS,CAAC,cAAc,IAAI,IAAI;IAIhC,qGAAqG;IAC9F,qBAAqB,CAAC,MAAM,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,CAAC,MAAM,EAAE,EAAE,MAAM,EAAE,CAAC;IAmBpF,OAAO,CAAC,uBAAuB;IAgB/B,OAAO,CAAC,2BAA2B;IAgCnC,OAAO,CAAC,gCAAgC;IAqBxC,OAAO,CAAC,8BAA8B;IAoDtC,yCAAyC;IAClC,WAAW,CAAC,MAAM,EAAE,MAAM,EAAE,CAAC,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM,EAAE,oBAAoB,CAAC,EAAE,MAAM,GAAG,MAAM,GAAG,IAAI;IASnG,qBAAqB,CAAC,KAAK,EAAE,MAAM,GAAG,IAAI;IAO1C,iBAAiB,CAAC,KAAK,EAAE,MAAM,GAAG,IAAI;IAO7C,OAAO,CAAC,OAAO,CAAa;IAE5B,IAAI,aAAa,IAAI,MAAM,CAG1B;IAED,OAAO,CAAC,qBAAqB,CAAa;IAE1C,MAAM,CAAC,CAAC,EAAE,wBAAwB,EAAE,CAAC,EAAE,MAAM,EAAE,CAAC,EAAE,MAAM,EAAE,CAAC,EAAE,MAAM,EAAE,CAAC,EAAE,MAAM,EAC5E,QAAQ,EAAE,EAAE,CAAC,QAAQ,EAAE,UAAU,EAAE,EAAE,CAAC,aAAa;IA0I5C,WAAW,CAAC,QAAQ,EAAE,EAAE,CAAC,QAAQ,EAAE,CAAC,EAAE,UAAU,GAAG,IAAI;CAkDjE;AAED,wBAAgB,eAAe,CAC7B,IAAI,EAAE,EAAE,CAAC,IAAI,GAAG,IAAI,GAAG,SAAS,EAAE,CAAC,EAAE,wBAAwB,EAAE,CAAC,EAAE,MAAM,EAAE,CAAC,EAAE,MAAM,EAAE,GAAG,EAAE,MAAM,GAC/F,MAAM,CAER"}
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@@ -357,6 +357,8 @@ export class MonomerPlacer extends CellRendererBackBase {
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drawStyle = DrawStyle.MSA;
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// if the sequence is rendered in shifted mode, we will also render three dots at start, indicating the shift
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this._leftThreeDotsPadding = positionShift > 0 ? g.measureText(shiftedLeftPaddingText).width : 0;
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// currently selected position to highlight
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const selectedPosition = Number.parseInt(tableCol.getTag(bioTAGS.selectedPosition) ?? '-200');
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const visibleSeqLength = Math.min(subParts.length, splitLimit);
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for (let posIdx = positionShift; posIdx < visibleSeqLength; ++posIdx) {
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const om = posIdx < subParts.length ? subParts.getOriginal(posIdx) : sh.defaultGapOriginal;
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@@ -375,7 +377,8 @@ export class MonomerPlacer extends CellRendererBackBase {
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color: color, pivot: 0, left: true, transparencyRate: 1.0, separator: separator, last: last,
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drawStyle: drawStyle, maxWord: maxLengthWordsSum, wordIdx: posIdx - positionShift, gridCell: gridCell,
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referenceSequence: referenceSequence, maxLengthOfMonomer: maxLengthOfMonomer,
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monomerTextSizeMap: this._monomerLengthMap, logger: this.logger
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monomerTextSizeMap: this._monomerLengthMap, logger: this.logger,
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selectedPosition: isNaN(selectedPosition) || selectedPosition < 1 ? undefined : selectedPosition - positionShift,
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};
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printLeftOrCentered(g, om, x + this.padding + this._leftThreeDotsPadding, y, w, h, opts);
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if (minDistanceRenderer > w)
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@@ -386,7 +389,7 @@ export class MonomerPlacer extends CellRendererBackBase {
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color: undefinedColor, pivot: 0, left: true, transparencyRate: 1.0, separator: separator, last: false,
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drawStyle: drawStyle, maxWord: maxLengthWordsSum, wordIdx: 0, gridCell: gridCell,
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maxLengthOfMonomer: maxLengthOfMonomer,
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monomerTextSizeMap: this._monomerLengthMap, logger: this.logger
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monomerTextSizeMap: this._monomerLengthMap, logger: this.logger,
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};
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printLeftOrCentered(g, shiftedLeftPaddingText, x + this.padding, y, w, h, opts);
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}
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@@ -1 +1 @@
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1
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-
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|
|
1
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+
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ChH,MAAM,IAAI,GAAkB,IAAI,CAAC,WAAW,CAAC,QAAQ,CAAC,aAAc,EAAE,KAAK,EAAE,cAAc,CAAC,KAAK,EAAE,WAAW,CAAC,CAAC;QAChH,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,GAAG,SAAS,mBAAmB,KAAK,WAAW,IAAI,EAAE,CAAC,CAAC;QAEzE,MAAM,EAAE,GAAG,IAAI,CAAC,SAAS,CAAC,aAAa,CAAC,IAAI,CAAC,QAAQ,CAAC,CAAC;QACvD,MAAM,KAAK,GAAG,EAAE,CAAC,WAAW,CAAC,QAAQ,CAAC,aAAc,CAAC,CAAC;QACtD,IAAI,IAAI,KAAK,IAAI,IAAI,IAAI,IAAI,CAAC,IAAI,IAAI,GAAG,aAAa,GAAG,KAAK,CAAC,MAAM,EAAE,CAAC;YACtE,MAAM,QAAQ,GAAG,EAAE,CAAC,QAAQ,IAAI,QAAQ,CAAC,EAAE,CAAC;YAC5C,MAAM,UAAU,GAAG;gBACjB,QAAQ,EAAE,IAAI;gBACd,OAAO,EAAE,QAAQ,KAAK,QAAQ,CAAC,GAAG,IAAI,QAAQ,KAAK,QAAQ,CAAC,GAAG,CAAC,CAAC,CAAC,SAAS,CAAC,UAAU,CAAC,CAAC,CAAC,SAAS,CAAC,EAAE;gBACrG,MAAM,EAAE,KAAK,CAAC,YAAY,CAAC,IAAI,GAAG,aAAa,CAAC;aAClC,CAAC;YACjB,MAAM,eAAe,GAAkB,EAAE,CAAC;YAC1C,IAAI,UAAU,GAAG,IAAI,CAAC,oBAAoB,CAAC,UAAU,CAAC,MAAM,CAAC,CAAC;YAC9D,IAAI,CAAC,UAAU,IAAI,IAAI,EAAE,CAAC;gBACxB,MAAM,UAAU,GAAG,IAAI,CAAC,aAAa,EAAE,CAAC;gBACxC,UAAU,GAAG,IAAI,CAAC,oBAAoB,CAAC,UAAU,CAAC,MAAM,CAAC,GAAG,CAAC,GAAG,EAAE;oBAChE,OAAO,UAAU,CAAC,CAAC,CAAC,UAAU,CAAC,UAAU,CAAC,UAAU,CAAC,OAAO,EAAE,UAAU,CAAC,MAAM,CAAC,CAAC,CAAC;wBAChF,EAAE,CAAC,OAAO,CAAC,kCAAkC,CAAC,CAAC;gBACnD,CAAC,CAAC,EAAE,CAAC;YACP,CAAC;YACD,eAAe,CAAC,IAAI,CAAC,UAAU,CAAC,CAAC;YACjC,EAAE,CAAC,OAAO,CAAC,IAAI,CAAC,EAAE,CAAC,IAAI,CAAC,eAAe,CAAC,EAAE,CAAC,CAAC,CAAC,GAAG,EAAE,EAAE,CAAC,CAAC,CAAC,GAAG,EAAE,CAAC,CAAC;YAE9D,qBAAqB,CAAC,QAAQ,EAAE,UAAU,CAAC,CAAC;QAC9C,CAAC;aAAM,CAAC;YACN,IAAI,IAAI,KAAK,CAAC,CAAC;gBACb,EAAE,CAAC,OAAO,CAAC,IAAI,CAAC,EAAE,CAAC,OAAO,CAAC,GAAG,IAAI,CAAC,GAAG,CAAC,aAAa,EAAE,KAAK,CAAC,MAAM,CAAC,kBAAkB,CAAC,EAAE,CAAC,CAAC,CAAC,GAAG,EAAE,EAAE,CAAC,CAAC,CAAC,GAAG,EAAE,CAAC,CAAC;;gBAE5G,EAAE,CAAC,OAAO,CAAC,IAAI,EAAE,CAAC;YACpB,qBAAqB,CAAC,QAAQ,EAAE,IAAI,CAAC,CAAC;QACxC,CAAC;IACH,CAAC;CACF;AAED,MAAM,UAAU,eAAe,CAC7B,IAAgC,EAAE,CAA2B,EAAE,CAAS,EAAE,CAAS,EAAE,GAAW;IAEhG,OAAO,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,MAAM,CAAC,KAAK,GAAG,GAAG,GAAG,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,MAAM,CAAC,KAAK,GAAG,GAAG,GAAG,CAAC,EAAE,CAAC,CAAC,CAAC;AAC7G,CAAC"}
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@@ -27,6 +27,7 @@ export declare const PrintOptionsDefaults: {
|
|
|
27
27
|
[key: string]: TextMetrics;
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28
28
|
};
|
|
29
29
|
/** */ logger?: ILogger;
|
|
30
|
+
selectedPosition?: number;
|
|
30
31
|
};
|
|
31
32
|
export type PrintOptions = typeof PrintOptionsDefaults;
|
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32
33
|
/** A function that prints a string aligned to left or centered.
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|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"cell-renderer.d.ts","sourceRoot":"","sources":["cell-renderer.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAGtC,OAAO,EAAC,OAAO,EAAC,MAAM,UAAU,CAAC;AAOjC,oBAAY,IAAI;IACd,gBAAgB,sCAAsC;CACvD;AAED,oBAAY,qBAAqB;IAC/B,iBAAiB,sCAAsC;CACxD;AAED,oBAAY,SAAS;IACnB,GAAG,QAAQ;IACX,OAAO,YAAY;CACpB;AAED,eAAO,MAAM,oBAAoB;IAC/B,6BAA6B,QAAQ,MAAM;IAC3C,MAAM,QAAQ,MAAM;IACpB,sBAAsB,OAAO,OAAO;IACpC,uDAAuD,mBAAmB,MAAM;IAChF,wCAAwC,YAAY,MAAM;IAC1D,wCAAwC,OAAO,OAAO;IACtD,iDAAiD,YAAY,SAAS;IACtE,oDAAoD,UAAU,MAAM,EAAE;IACtE,mCAAmC,UAAU,MAAM;IACnD,OAAO,WAAW,EAAE,CAAC,QAAQ,GAAG,IAAI;IACpC,uCAAuC,oBAAoB,MAAM,EAAE,GAAG,IAAI;IAC1E,8BAA8B,qBAAqB,MAAM,GAAG,IAAI;IAChE,kCAAkC,qBAAqB;QAAE,CAAC,GAAG,EAAE,MAAM,GAAG,WAAW,CAAA;KAAE;IACrF,MAAM,UAAU,OAAO;
|
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1
|
+
{"version":3,"file":"cell-renderer.d.ts","sourceRoot":"","sources":["cell-renderer.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAGtC,OAAO,EAAC,OAAO,EAAC,MAAM,UAAU,CAAC;AAOjC,oBAAY,IAAI;IACd,gBAAgB,sCAAsC;CACvD;AAED,oBAAY,qBAAqB;IAC/B,iBAAiB,sCAAsC;CACxD;AAED,oBAAY,SAAS;IACnB,GAAG,QAAQ;IACX,OAAO,YAAY;CACpB;AAED,eAAO,MAAM,oBAAoB;IAC/B,6BAA6B,QAAQ,MAAM;IAC3C,MAAM,QAAQ,MAAM;IACpB,sBAAsB,OAAO,OAAO;IACpC,uDAAuD,mBAAmB,MAAM;IAChF,wCAAwC,YAAY,MAAM;IAC1D,wCAAwC,OAAO,OAAO;IACtD,iDAAiD,YAAY,SAAS;IACtE,oDAAoD,UAAU,MAAM,EAAE;IACtE,mCAAmC,UAAU,MAAM;IACnD,OAAO,WAAW,EAAE,CAAC,QAAQ,GAAG,IAAI;IACpC,uCAAuC,oBAAoB,MAAM,EAAE,GAAG,IAAI;IAC1E,8BAA8B,qBAAqB,MAAM,GAAG,IAAI;IAChE,kCAAkC,qBAAqB;QAAE,CAAC,GAAG,EAAE,MAAM,GAAG,WAAW,CAAA;KAAE;IACrF,MAAM,UAAU,OAAO;uBACJ,MAAM;CACxB,CAAC;AAEJ,MAAM,MAAM,YAAY,GAAG,OAAO,oBAAoB,CAAC;AAEvD;;;;;;;;wDAQwD;AACxD,wBAAgB,mBAAmB,CAAC,CAAC,EAAE,wBAAwB,EAC7D,CAAC,EAAE,MAAM,EAAE,CAAC,EAAE,MAAM,EAAE,CAAC,EAAE,MAAM,EAAE,CAAC,EAAE,MAAM,EAAE,CAAC,EAAE,MAAM,EAAE,OAAO,EAAE,OAAO,CAAC,YAAY,CAAC,GACpF,MAAM,CAsER"}
|
|
@@ -32,6 +32,7 @@ export const PrintOptionsDefaults = new class {
|
|
|
32
32
|
/** Max length of a monomer */ this.maxLengthOfMonomer = null;
|
|
33
33
|
/** Map of monomers' text sizes */ this.monomerTextSizeMap = {};
|
|
34
34
|
/** */ this.logger = undefined;
|
|
35
|
+
this.selectedPosition = undefined;
|
|
35
36
|
}
|
|
36
37
|
}();
|
|
37
38
|
/** A function that prints a string aligned to left or centered.
|
|
@@ -85,6 +86,10 @@ export function printLeftOrCentered(g, s, x, y, w, h, options) {
|
|
|
85
86
|
}
|
|
86
87
|
/** Draw color part at {@link dx1}, and gray part at {@link dx2}. */
|
|
87
88
|
function draw(dx1, dx2) {
|
|
89
|
+
if (opts.selectedPosition === opts.wordIdx + 1) {
|
|
90
|
+
g.fillStyle = 'rgba(60, 177, 115, 0.2)'; // green for selected position
|
|
91
|
+
g.fillRect(x + dx1, y, maxColorTextSize, h);
|
|
92
|
+
}
|
|
88
93
|
const drawColor = colorCode ? opts.color : blackColor;
|
|
89
94
|
g.fillStyle = drawColor;
|
|
90
95
|
g.globalAlpha = opts.transparencyRate;
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"cell-renderer.js","sourceRoot":"","sources":["cell-renderer.ts"],"names":[],"mappings":"AAIA,OAAO,EAAC,cAAc,EAAC,MAAM,uBAAuB,CAAC;AAGrD,MAAM,cAAc,GAAG,kBAAkB,CAAC;AAC1C,MAAM,SAAS,GAAG,SAAS,CAAC;AAC5B,MAAM,UAAU,GAAG,YAAY,CAAC;AAChC,MAAM,sBAAsB,GAA0D,cAAc,CAAC;AAErG,MAAM,CAAN,IAAY,IAEX;AAFD,WAAY,IAAI;IACd,8DAAsD,CAAA;AACxD,CAAC,EAFW,IAAI,KAAJ,IAAI,QAEf;AAED,MAAM,CAAN,IAAY,qBAEX;AAFD,WAAY,qBAAqB;IAC/B,gFAAuD,CAAA;AACzD,CAAC,EAFW,qBAAqB,KAArB,qBAAqB,QAEhC;AAED,MAAM,CAAN,IAAY,SAGX;AAHD,WAAY,SAAS;IACnB,wBAAW,CAAA;IACX,gCAAmB,CAAA;AACrB,CAAC,EAHW,SAAS,KAAT,SAAS,QAGpB;AAED,MAAM,CAAC,MAAM,oBAAoB,GAAG,IAAI;IAAA;QACtC,6BAA6B,CAAC,UAAK,GAAW,cAAc,CAAC;QAC7D,MAAM,CAAC,UAAK,GAAW,CAAC,CAAC;QACzB,sBAAsB,CAAC,SAAI,GAAY,KAAK,CAAC;QAC7C,uDAAuD,CAAC,qBAAgB,GAAW,GAAG,CAAC;QACvF,wCAAwC,CAAC,cAAS,GAAW,EAAE,CAAC;QAChE,wCAAwC,CAAC,SAAI,GAAY,KAAK,CAAC;QAC/D,iDAAiD,CAAC,cAAS,GAAc,SAAS,CAAC,OAAO,CAAC;QAC3F,oDAAoD,CAAC,YAAO,GAAa,EAAE,CAAC;QAC5E,mCAAmC,CAAC,YAAO,GAAW,CAAC,CAAC;QACxD,OAAO,CAAC,aAAQ,GAAuB,IAAI,CAAC;QAC5C,uCAAuC,CAAC,sBAAiB,GAAoB,IAAI,CAAC;QAClF,8BAA8B,CAAC,uBAAkB,GAAkB,IAAI,CAAC;QACxE,kCAAkC,CAAC,uBAAkB,GAAmC,EAAE,CAAC;QAC3F,MAAM,CAAC,WAAM,GAAa,SAAS,CAAC;
|
|
1
|
+
{"version":3,"file":"cell-renderer.js","sourceRoot":"","sources":["cell-renderer.ts"],"names":[],"mappings":"AAIA,OAAO,EAAC,cAAc,EAAC,MAAM,uBAAuB,CAAC;AAGrD,MAAM,cAAc,GAAG,kBAAkB,CAAC;AAC1C,MAAM,SAAS,GAAG,SAAS,CAAC;AAC5B,MAAM,UAAU,GAAG,YAAY,CAAC;AAChC,MAAM,sBAAsB,GAA0D,cAAc,CAAC;AAErG,MAAM,CAAN,IAAY,IAEX;AAFD,WAAY,IAAI;IACd,8DAAsD,CAAA;AACxD,CAAC,EAFW,IAAI,KAAJ,IAAI,QAEf;AAED,MAAM,CAAN,IAAY,qBAEX;AAFD,WAAY,qBAAqB;IAC/B,gFAAuD,CAAA;AACzD,CAAC,EAFW,qBAAqB,KAArB,qBAAqB,QAEhC;AAED,MAAM,CAAN,IAAY,SAGX;AAHD,WAAY,SAAS;IACnB,wBAAW,CAAA;IACX,gCAAmB,CAAA;AACrB,CAAC,EAHW,SAAS,KAAT,SAAS,QAGpB;AAED,MAAM,CAAC,MAAM,oBAAoB,GAAG,IAAI;IAAA;QACtC,6BAA6B,CAAC,UAAK,GAAW,cAAc,CAAC;QAC7D,MAAM,CAAC,UAAK,GAAW,CAAC,CAAC;QACzB,sBAAsB,CAAC,SAAI,GAAY,KAAK,CAAC;QAC7C,uDAAuD,CAAC,qBAAgB,GAAW,GAAG,CAAC;QACvF,wCAAwC,CAAC,cAAS,GAAW,EAAE,CAAC;QAChE,wCAAwC,CAAC,SAAI,GAAY,KAAK,CAAC;QAC/D,iDAAiD,CAAC,cAAS,GAAc,SAAS,CAAC,OAAO,CAAC;QAC3F,oDAAoD,CAAC,YAAO,GAAa,EAAE,CAAC;QAC5E,mCAAmC,CAAC,YAAO,GAAW,CAAC,CAAC;QACxD,OAAO,CAAC,aAAQ,GAAuB,IAAI,CAAC;QAC5C,uCAAuC,CAAC,sBAAiB,GAAoB,IAAI,CAAC;QAClF,8BAA8B,CAAC,uBAAkB,GAAkB,IAAI,CAAC;QACxE,kCAAkC,CAAC,uBAAkB,GAAmC,EAAE,CAAC;QAC3F,MAAM,CAAC,WAAM,GAAa,SAAS,CAAC;QACpC,qBAAgB,GAAY,SAAS,CAAC;IACxC,CAAC;CAAA,EAAE,CAAC;AAIJ;;;;;;;;wDAQwD;AACxD,MAAM,UAAU,mBAAmB,CAAC,CAA2B,EAC7D,CAAS,EAAE,CAAS,EAAE,CAAS,EAAE,CAAS,EAAE,CAAS,EAAE,OAA8B;;IAErF,MAAM,IAAI,GAAG,MAAM,CAAC,MAAM,CAAC,MAAM,CAAC,MAAM,CAAC,EAAE,EAAE,oBAAoB,CAAC,EAAE,OAAO,CAAC,CAAC;IAE7E,MAAM,SAAS,GAAW,4BAA4B,CAAC;IACvD,OAAO,CAAC,MAAM,EAAE,KAAK,CAAC,GAAG,SAAS,SAAS,CAAC,CAAC;IAC7C,CAAC,CAAC,SAAS,GAAG,OAAO,CAAC;IACtB,IAAI,SAAS,GAAG,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,CAAC;IAC/B,IAAI,QAAQ,GAAG,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,SAAS,CAAC;IAC/C,IAAI,IAAI,CAAC,SAAS,KAAK,SAAS,CAAC,GAAG;QAAE,QAAQ,GAAG,EAAE,CAAC;IACpD,IAAI,SAAS,GAAG,IAAI,CAAC;IACrB,IAAI,kBAAkB,GAAG,IAAI,CAAC;IAC9B,IAAI,mBAAmB,GAAG,YAAY,CAAC;IACvC,IAAI,CAAC,IAAI,CAAC,QAAQ,IAAI,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,QAAQ,CAAC,IAAI,CAAC,MAAM,IAAI,IAAI,CAAC,EAAE,CAAC;QACnE,SAAS,GAAG,IAAI,CAAC,QAAQ,CAAC,IAAI,CAAC,MAAM,CAAC,IAAI,CAAC,YAAY,CAAC,IAAI,IAAI,CAAC;QACjE,kBAAkB,GAAG,IAAI,CAAC,QAAQ,CAAC,IAAI,CAAC,MAAM,CAAC,IAAI,CAAC,sBAAsB,CAAC,IAAI,IAAI,CAAC;QACpF,mBAAmB,GAAG,IAAI,CAAC,QAAQ,CAAC,IAAI,CAAC,MAAM,CAAC,IAAI,CAAC,sBAAsB,CAAC,IAAI,YAAY,CAAC;IAC/F,CAAC;IAED,IAAI,IAAI,CAAC,iBAAiB,EAAE,CAAC;QAC3B,MAAM,uBAAuB,GAAG,IAAI,CAAC,iBAAiB,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC;QACrE,IAAI,kBAAkB,IAAI,CAAC,IAAI,CAAC,iBAAiB,CAAC,MAAM,GAAG,CAAC,CAAC,IAAI,CAAC,mBAAmB,KAAK,YAAY,CAAC;YACrG,IAAI,CAAC,gBAAgB,GAAG,CAAC,SAAS,IAAI,uBAAuB,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,IAAI,CAAC,gBAAgB,CAAC;QAC/F,IAAI,kBAAkB,IAAI,CAAC,IAAI,CAAC,iBAAiB,CAAC,MAAM,GAAG,CAAC,CAAC,IAAI,CAAC,mBAAmB,KAAK,OAAO,CAAC;YAChG,IAAI,CAAC,gBAAgB,GAAG,CAAC,SAAS,IAAI,uBAAuB,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,IAAI,CAAC,gBAAgB,CAAC;IACjG,CAAC;IACD,IAAI,IAAI,CAAC,kBAAkB,IAAI,IAAI;QACjC,SAAS,GAAG,sBAAsB,CAAC,SAAS,EAAE,IAAI,CAAC,kBAAkB,CAAC,CAAC;IAEzE,MAAM,QAAQ,GAAG,SAAS,GAAG,QAAQ,CAAC;IACtC,MAAA,IAAI,CAAC,kBAAkB,EAAC,QAAQ,SAAR,QAAQ,IAAM,CAAC,CAAC,WAAW,CAAC,QAAQ,CAAC,EAAC;IAC9D,IAAI,QAAQ,GAAQ,IAAI,CAAC,kBAAkB,CAAC,QAAQ,CAAC,CAAC;IACtD,MAAA,IAAI,CAAC,kBAAkB,EAAC,SAAS,SAAT,SAAS,IAAM,CAAC,CAAC,WAAW,CAAC,SAAS,CAAC,EAAC;IAChE,IAAI,gBAAgB,GAAG,IAAI,CAAC,kBAAkB,CAAC,SAAS,CAAC,CAAC,KAAK,CAAC;IAChE,MAAM,EAAE,GAAG,CAAC,GAAG,CAAC,GAAG,CAAC,QAAQ,CAAC,qBAAqB,GAAG,QAAQ,CAAC,sBAAsB,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC;IAE9F,MAAA,IAAI,CAAC,kBAAkB,EAAC,QAAQ,SAAR,QAAQ,IAAM,CAAC,CAAC,WAAW,CAAC,QAAQ,CAAC,EAAC;IAC9D,MAAM,YAAY,GAAG,IAAI,CAAC,kBAAkB,CAAC,QAAQ,CAAC,CAAC,KAAK,CAAC;IAC7D,QAAQ,GAAG,QAAQ,CAAC,KAAK,CAAC;IAC1B,IAAI,IAAI,CAAC,SAAS,KAAK,SAAS,CAAC,GAAG,EAAE,CAAC;QACrC,gBAAgB,GAAG,IAAI,CAAC,OAAO,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC;QAC9C,QAAQ,GAAG,IAAI,CAAC,OAAO,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC;IACxC,CAAC;IAED,oEAAoE;IACpE,SAAS,IAAI,CAAC,GAAW,EAAE,GAAW;QACpC,IAAI,IAAI,CAAC,gBAAgB,KAAK,IAAI,CAAC,OAAO,GAAG,CAAC,EAAE,CAAC;YAC/C,CAAC,CAAC,SAAS,GAAG,yBAAyB,CAAC,CAAC,8BAA8B;YACvE,CAAC,CAAC,QAAQ,CAAC,CAAC,GAAG,GAAG,EAAE,CAAC,EAAE,gBAAgB,EAAE,CAAC,CAAC,CAAC;QAC9C,CAAC;QACD,MAAM,SAAS,GAAG,SAAS,CAAC,CAAC,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,UAAU,CAAC;QACtD,CAAC,CAAC,SAAS,GAAG,SAAS,CAAC;QACxB,CAAC,CAAC,WAAW,GAAG,IAAI,CAAC,gBAAgB,CAAC;QACtC,IAAI,IAAI,CAAC,SAAS,KAAK,SAAS,CAAC,OAAO,EAAE,CAAC;YACzC,CAAC,CAAC,QAAQ,CAAC,SAAS,EAAE,CAAC,GAAG,GAAG,EAAE,CAAC,GAAG,EAAE,CAAC,CAAC;YACvC,CAAC,CAAC,SAAS,GAAG,SAAS,CAAC;YACxB,CAAC,CAAC,QAAQ,CAAC,QAAQ,EAAE,CAAC,GAAG,GAAG,EAAE,CAAC,GAAG,EAAE,CAAC,CAAC;QACxC,CAAC;QACD,IAAI,IAAI,CAAC,SAAS,KAAK,SAAS,CAAC,GAAG;YAClC,CAAC,CAAC,QAAQ,CAAC,SAAS,EAAE,CAAC,GAAG,GAAG,EAAE,CAAC,GAAG,EAAE,CAAC,CAAC;IAC3C,CAAC;IAED,MAAM,MAAM,GAAW,CAAC,IAAI,CAAC,OAAO,CAAC,IAAI,CAAC,OAAO,CAAC,IAAI,CAAC,CAAC,GAAG,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC;IAClF,IAAI,IAAI,CAAC,IAAI,IAAI,QAAQ,GAAG,CAAC,EAAE,CAAC;QAC9B,IAAI,CAAC,MAAM,EAAE,MAAM,GAAG,gBAAgB,CAAC,CAAC;QACxC,OAAO,CAAC,GAAG,MAAM,GAAG,gBAAgB,GAAG,YAAY,CAAC;IACtD,CAAC;SAAM,CAAC;QACN,MAAM,EAAE,GAAG,CAAC,CAAC,GAAG,QAAQ,CAAC,GAAG,CAAC,CAAC;QAC9B,IAAI,CAAC,EAAE,EAAE,EAAE,GAAG,gBAAgB,CAAC,CAAC;QAChC,OAAO,CAAC,GAAG,MAAM,GAAG,EAAE,GAAG,gBAAgB,CAAC;IAC5C,CAAC;AACH,CAAC"}
|
|
@@ -27,7 +27,8 @@ export declare enum TAGS {
|
|
|
27
27
|
positionNames = ".positionNames",
|
|
28
28
|
positionLabels = ".positionLabels",
|
|
29
29
|
regions = ".regions",
|
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30
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-
positionShift = ".positionShift"
|
|
30
|
+
positionShift = ".positionShift",
|
|
31
|
+
selectedPosition = ".selectedPosition"
|
|
31
32
|
}
|
|
32
33
|
export { TAGS as BioTags };
|
|
33
34
|
export declare const positionSeparator: string;
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"consts.d.ts","sourceRoot":"","sources":["consts.ts"],"names":[],"mappings":"AAAA,OAAO,EAAC,aAAa,EAAC,MAAM,SAAS,CAAC;AAEtC,0EAA0E;AAC1E,oBAAY,QAAQ;IAClB,KAAK,UAAU;IACf,SAAS,cAAc;IACvB,IAAI,SAAS;IACmB,MAAM,WAAW;CAClD;AAED,0BAAkB,SAAS;IACzB,OAAO,YAAY;IACnB,GAAG,QAAQ;CACZ;AAED,oBAAY,QAAQ;IAClB,GAAG,QAAQ;IACX,GAAG,QAAQ;IACX,EAAE,OAAO;IACT,cAAc;IACd,EAAE,OAAO;CACV;AAED,oBAAY,IAAI;IACd,OAAO,YAAY;IACnB,QAAQ,aAAa;IACrB,YAAY,kBAAkB;IAC9B,mBAAmB,yBAAyB;IAC5C,SAAS,cAAc;IACvB,gBAAgB,sBAAsB;IACtC,aAAa,mBAAmB;IAChC,cAAc,oBAAoB;IAClC,OAAO,aAAa;IACpB,aAAa,mBAAmB;
|
|
1
|
+
{"version":3,"file":"consts.d.ts","sourceRoot":"","sources":["consts.ts"],"names":[],"mappings":"AAAA,OAAO,EAAC,aAAa,EAAC,MAAM,SAAS,CAAC;AAEtC,0EAA0E;AAC1E,oBAAY,QAAQ;IAClB,KAAK,UAAU;IACf,SAAS,cAAc;IACvB,IAAI,SAAS;IACmB,MAAM,WAAW;CAClD;AAED,0BAAkB,SAAS;IACzB,OAAO,YAAY;IACnB,GAAG,QAAQ;CACZ;AAED,oBAAY,QAAQ;IAClB,GAAG,QAAQ;IACX,GAAG,QAAQ;IACX,EAAE,OAAO;IACT,cAAc;IACd,EAAE,OAAO;CACV;AAED,oBAAY,IAAI;IACd,OAAO,YAAY;IACnB,QAAQ,aAAa;IACrB,YAAY,kBAAkB;IAC9B,mBAAmB,yBAAyB;IAC5C,SAAS,cAAc;IACvB,gBAAgB,sBAAsB;IACtC,aAAa,mBAAmB;IAChC,cAAc,oBAAoB;IAClC,OAAO,aAAa;IACpB,aAAa,mBAAmB;IAChC,gBAAgB,sBAAsB;CACvC;AAED,OAAO,EAAC,IAAI,IAAI,OAAO,EAAC,CAAC;AAEzB,eAAO,MAAM,iBAAiB,EAAE,MAAa,CAAC;AAE9C,eAAO,MAAM,SAAS,EAAE,MAAqD,CAAC;AAE9E,eAAO,MAAM,MAAM,EAAE,MAA0C,CAAC;AAChE,eAAO,MAAM,SAAS,EAAE,MAAyB,CAAC;AAElD,eAAO,MAAM,SAAS;;;;;;CASnB,CAAC;AAEJ,eAAO,MAAM,kBAAkB,EAAE,aAAa,EAI7C,CAAC;AAEF,2BAA2B;AAC3B,eAAO,MAAM,UAAU,EAAE,MAAW,CAAC;AAErC,eAAO,MAAM,YAAY,EAAE;IACzB,CAAC,KAAK,EAAE,MAAM,GAAG,MAAM,CAAA;CAKxB,CAAC"}
|
|
@@ -27,6 +27,7 @@ export var TAGS;
|
|
|
27
27
|
TAGS["positionLabels"] = ".positionLabels";
|
|
28
28
|
TAGS["regions"] = ".regions";
|
|
29
29
|
TAGS["positionShift"] = ".positionShift";
|
|
30
|
+
TAGS["selectedPosition"] = ".selectedPosition";
|
|
30
31
|
})(TAGS || (TAGS = {}));
|
|
31
32
|
export { TAGS as BioTags };
|
|
32
33
|
export const positionSeparator = ', ';
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"consts.js","sourceRoot":"","sources":["consts.ts"],"names":[],"mappings":"AAAA,OAAO,EAAC,aAAa,EAAC,MAAM,SAAS,CAAC;AAEtC,0EAA0E;AAC1E,MAAM,CAAN,IAAY,QAKX;AALD,WAAY,QAAQ;IAClB,2BAAe,CAAA;IACf,mCAAuB,CAAA;IACvB,yBAAa,CAAA;IACb,+BAA+B,CAAC,6BAAiB,CAAA;AACnD,CAAC,EALW,QAAQ,KAAR,QAAQ,QAKnB;AAOD,MAAM,CAAN,IAAY,QAMX;AAND,WAAY,QAAQ;IAClB,uBAAW,CAAA;IACX,uBAAW,CAAA;IACX,qBAAS,CAAA;IACT,cAAc;IACd,qBAAS,CAAA;AACX,CAAC,EANW,QAAQ,KAAR,QAAQ,QAMnB;AAED,MAAM,CAAN,IAAY,
|
|
1
|
+
{"version":3,"file":"consts.js","sourceRoot":"","sources":["consts.ts"],"names":[],"mappings":"AAAA,OAAO,EAAC,aAAa,EAAC,MAAM,SAAS,CAAC;AAEtC,0EAA0E;AAC1E,MAAM,CAAN,IAAY,QAKX;AALD,WAAY,QAAQ;IAClB,2BAAe,CAAA;IACf,mCAAuB,CAAA;IACvB,yBAAa,CAAA;IACb,+BAA+B,CAAC,6BAAiB,CAAA;AACnD,CAAC,EALW,QAAQ,KAAR,QAAQ,QAKnB;AAOD,MAAM,CAAN,IAAY,QAMX;AAND,WAAY,QAAQ;IAClB,uBAAW,CAAA;IACX,uBAAW,CAAA;IACX,qBAAS,CAAA;IACT,cAAc;IACd,qBAAS,CAAA;AACX,CAAC,EANW,QAAQ,KAAR,QAAQ,QAMnB;AAED,MAAM,CAAN,IAAY,IAYX;AAZD,WAAY,IAAI;IACd,2BAAmB,CAAA;IACnB,6BAAqB,CAAA;IACrB,sCAA8B,CAAA;IAC9B,oDAA4C,CAAA;IAC5C,+BAAuB,CAAA;IACvB,8CAAsC,CAAA;IACtC,wCAAgC,CAAA;IAChC,0CAAkC,CAAA;IAClC,4BAAoB,CAAA;IACpB,wCAAgC,CAAA;IAChC,8CAAsC,CAAA;AACxC,CAAC,EAZW,IAAI,KAAJ,IAAI,QAYf;AAED,OAAO,EAAC,IAAI,IAAI,OAAO,EAAC,CAAC;AAEzB,MAAM,CAAC,MAAM,iBAAiB,GAAW,IAAI,CAAC;AAE9C,MAAM,CAAC,MAAM,SAAS,GAAW,4CAA4C,CAAC;AAE9E,MAAM,CAAC,MAAM,MAAM,GAAW,iCAAiC,CAAC;AAChE,MAAM,CAAC,MAAM,SAAS,GAAW,gBAAgB,CAAC;AAElD,MAAM,CAAC,MAAM,SAAS,GAAG,IAAI;IAAA;QAC3B,UAAK,GAAG;YACN,OAAO,EAAE,IAAI,GAAG,CAAS;gBACvB,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG;gBAChD,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG;aACjD,CAAC;YACF,GAAG,EAAE,IAAI,GAAG,CAAS,CAAC,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,CAAC,CAAC;YAC1C,GAAG,EAAE,IAAI,GAAG,CAAS,CAAC,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,CAAC,CAAC;SAC3C,CAAC;IACJ,CAAC;CAAA,EAAE,CAAC;AAEJ,MAAM,CAAC,MAAM,kBAAkB,GAAoB;IACjD,IAAI,aAAa,CAAC,QAAQ,CAAC,EAAE,EAAE,SAAS,CAAC,KAAK,CAAC,OAAO,EAAE,IAAI,CAAC;IAC7D,IAAI,aAAa,CAAC,QAAQ,CAAC,GAAG,EAAE,SAAS,CAAC,KAAK,CAAC,GAAG,EAAE,IAAI,CAAC;IAC1D,IAAI,aAAa,CAAC,QAAQ,CAAC,GAAG,EAAE,SAAS,CAAC,KAAK,CAAC,GAAG,EAAE,IAAI,CAAC;CAC3D,CAAC;AAEF,2BAA2B;AAC3B,MAAM,CAAC,MAAM,UAAU,GAAW,EAAE,CAAC;AAErC,MAAM,CAAC,MAAM,YAAY,GAErB;IACF,CAAC,QAAQ,CAAC,KAAK,CAAC,EAAE,GAAG;IACrB,CAAC,QAAQ,CAAC,SAAS,CAAC,EAAE,EAAE;IACxB,CAAC,QAAQ,CAAC,IAAI,CAAC,EAAE,GAAG;CACrB,CAAC"}
|
|
@@ -23,11 +23,15 @@ interface MSAHeaderOptions {
|
|
|
23
23
|
height?: number;
|
|
24
24
|
onPositionChange?: (position: number, range: WindowRange) => void;
|
|
25
25
|
}
|
|
26
|
+
interface Preventable {
|
|
27
|
+
preventDefault: () => void;
|
|
28
|
+
}
|
|
26
29
|
export declare class MSAScrollingHeader {
|
|
27
30
|
private config;
|
|
28
31
|
private state;
|
|
29
32
|
private canvas;
|
|
30
33
|
private ctx;
|
|
34
|
+
private eventElement;
|
|
31
35
|
/**
|
|
32
36
|
* Constructor for the MSA Header
|
|
33
37
|
* @param {MSAHeaderOptions} options - Configuration options
|
|
@@ -37,12 +41,15 @@ export declare class MSAScrollingHeader {
|
|
|
37
41
|
* Initialize the component
|
|
38
42
|
*/
|
|
39
43
|
private init;
|
|
40
|
-
|
|
44
|
+
get isValid(): boolean;
|
|
45
|
+
draw(x: number, y: number, w: number, h: number, currentPos: number, scrollerStart: number, preventable: Preventable): void;
|
|
41
46
|
getCoords(e: MouseEvent): {
|
|
42
47
|
x: number;
|
|
43
48
|
y: number;
|
|
44
49
|
};
|
|
45
50
|
isInHeaderArea(e: MouseEvent): boolean;
|
|
51
|
+
get positionWidth(): number;
|
|
52
|
+
set positionWidth(value: number);
|
|
46
53
|
isInSliderArea(e: MouseEvent): boolean;
|
|
47
54
|
get sliderWidth(): number;
|
|
48
55
|
isInSliderDraggableArea(e: MouseEvent): boolean;
|
|
@@ -57,6 +64,7 @@ export declare class MSAScrollingHeader {
|
|
|
57
64
|
* @param {MouseEvent} e - Mouse event
|
|
58
65
|
*/
|
|
59
66
|
private handleMouseMove;
|
|
67
|
+
private handleKeyDown;
|
|
60
68
|
/**
|
|
61
69
|
* Handle mouse up (end dragging)
|
|
62
70
|
*/
|
|
@@ -66,6 +74,11 @@ export declare class MSAScrollingHeader {
|
|
|
66
74
|
* @param {number} x - X position of mouse
|
|
67
75
|
*/
|
|
68
76
|
private handleSliderDrag;
|
|
77
|
+
get headerHeight(): number;
|
|
78
|
+
/** Soft setting of header hight, without redrawing or update event
|
|
79
|
+
* @param {number} value - New header height
|
|
80
|
+
*/
|
|
81
|
+
set headerHeight(value: number);
|
|
69
82
|
/**
|
|
70
83
|
* Handle click on positions
|
|
71
84
|
* @param {MouseEvent} e - Mouse event
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"sequence-position-scroller.d.ts","sourceRoot":"","sources":["sequence-position-scroller.ts"],"names":[],"mappings":"AACA;;;;GAIG;
|
|
1
|
+
{"version":3,"file":"sequence-position-scroller.d.ts","sourceRoot":"","sources":["sequence-position-scroller.ts"],"names":[],"mappings":"AACA;;;;GAIG;AAOH,UAAU,WAAW;IACnB,KAAK,EAAE,MAAM,CAAC;IACd,GAAG,EAAE,MAAM,CAAC;CACb;AAGD,UAAU,gBAAgB;IACxB,MAAM,EAAE,iBAAiB,CAAC;IAC1B,cAAc,CAAC,EAAE,MAAM,CAAC;IACxB,aAAa,CAAC,EAAE,MAAM,CAAC;IACvB,YAAY,CAAC,EAAE,MAAM,CAAC;IACtB,YAAY,CAAC,EAAE,MAAM,CAAC;IACtB,eAAe,CAAC,EAAE,MAAM,CAAC;IACzB,mBAAmB,CAAC,EAAE,MAAM,CAAC;IAC7B,cAAc,CAAC,EAAE,OAAO,CAAC;IACzB,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,CAAC,CAAC,EAAE,MAAM,CAAC;IACX,CAAC,CAAC,EAAE,MAAM,CAAC;IACX,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,gBAAgB,CAAC,EAAE,CAAC,QAAQ,EAAE,MAAM,EAAE,KAAK,EAAE,WAAW,KAAK,IAAI,CAAC;CACnE;AAED,UAAU,WAAW;IACnB,cAAc,EAAE,MAAM,IAAI,CAAC;CAC5B;AAQD,qBAAa,kBAAkB;IAC7B,OAAO,CAAC,MAAM,CAA6B;IAC3C,OAAO,CAAC,KAAK,CAAiB;IAC9B,OAAO,CAAC,MAAM,CAAkC;IAChD,OAAO,CAAC,GAAG,CAAyC;IACpD,OAAO,CAAC,YAAY,CAAiB;IAErC;;;OAGG;gBACS,OAAO,EAAE,gBAAgB;IA+BrC;;OAEG;IACH,OAAO,CAAC,IAAI;IAyBZ,IAAW,OAAO,YAEjB;IAEM,IAAI,CAAC,CAAC,EAAE,MAAM,EAAE,CAAC,EAAE,MAAM,EAAE,CAAC,EAAE,MAAM,EAAE,CAAC,EAAE,MAAM,EAAE,UAAU,EAAE,MAAM,EAAE,aAAa,EAAE,MAAM,EAAE,WAAW,EAAE,WAAW,GAAG,IAAI;IA0HlI,SAAS,CAAC,CAAC,EAAE,UAAU;;;;IAOvB,cAAc,CAAC,CAAC,EAAE,UAAU,GAAG,OAAO;IAKtC,IAAI,aAAa,IAAI,MAAM,CAE1B;IAED,IAAW,aAAa,CAAC,KAAK,EAAE,MAAM,EAErC;IAED,cAAc,CAAC,CAAC,EAAE,UAAU,GAAG,OAAO;IAMtC,IAAI,WAAW,IAAI,MAAM,CAIxB;IAED,uBAAuB,CAAC,CAAC,EAAE,UAAU,GAAG,OAAO;IAU/C;;;OAGG;IACH,OAAO,CAAC,eAAe;IAavB,OAAO,CAAC,gBAAgB;IA0BxB;;;OAGG;IACH,OAAO,CAAC,eAAe;IAavB,OAAO,CAAC,aAAa;IAoCrB;;OAEG;IACH,OAAO,CAAC,aAAa;IAIrB;;;OAGG;IACH,OAAO,CAAC,gBAAgB;IAmBxB,IAAI,YAAY,IAAI,MAAM,CAEzB;IAED;;OAEG;IACH,IAAI,YAAY,CAAC,KAAK,EAAE,MAAM,EAE7B;IAED;;;OAGG;IACH,OAAO,CAAC,WAAW;IA4BnB;;;OAGG;IACI,cAAc,IAAI,WAAW;IAOpC;;;OAGG;IACI,YAAY,CAAC,SAAS,EAAE,OAAO,CAAC,gBAAgB,CAAC,GAAG,IAAI;IAY/D;;;OAGG;IACI,kBAAkB,IAAI,MAAM;IAInC;;;OAGG;IACI,kBAAkB,CAAC,QAAQ,EAAE,MAAM,GAAG,IAAI;CAQlD"}
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@@ -4,6 +4,7 @@
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* This module provides functionality for an interactive MSA (Multiple Sequence Alignment) header
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* with position markers, slider navigation, and position selection.
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*/
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import * as ui from 'datagrok-api/ui';
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export class MSAScrollingHeader {
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/**
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* Constructor for the MSA Header
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@@ -16,8 +17,8 @@ export class MSAScrollingHeader {
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this.config = {
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x: options.x || 0,
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y: options.y || 0,
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width: options.width ||
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height: options.height ||
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width: options.width || 0,
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height: options.height || 0,
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windowStartPosition: options.windowStartPosition || 1,
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positionWidth: options.positionWidth || 15,
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totalPositions: options.totalPositions || 5000,
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@@ -29,6 +30,9 @@ export class MSAScrollingHeader {
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onPositionChange: options.onPositionChange || ((_, __) => { }),
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...options // Override defaults with any provided options
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};
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this.eventElement = ui.div();
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this.eventElement.style.position = 'absolute';
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this.config.canvas.parentElement?.appendChild(this.eventElement);
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// Internal state
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this.state = {
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isDragging: false,
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@@ -53,17 +57,23 @@ export class MSAScrollingHeader {
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}
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this.ctx = context;
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// Add event listeners
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this.
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this.
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this.
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this.
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this.
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this.eventElement.addEventListener('mousedown', this.handleMouseDown.bind(this));
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this.eventElement.addEventListener('mousemove', this.handleMouseMove.bind(this));
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this.eventElement.addEventListener('mouseup', this.handleMouseUp.bind(this));
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this.eventElement.addEventListener('mouseleave', this.handleMouseUp.bind(this));
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this.eventElement.addEventListener('click', this.handleClick.bind(this));
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this.eventElement.addEventListener('wheel', this.handleMouseWheel.bind(this));
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window.addEventListener('keydown', this.handleKeyDown.bind(this));
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}
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-
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-
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-
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-
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-
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get isValid() {
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return !!this.canvas && !!this.ctx && this.config.height >= this.config.headerHeight;
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}
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draw(x, y, w, h, currentPos, scrollerStart, preventable) {
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// soft internal update
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if (this.config.x != x || this.config.y != y || this.config.width != w || this.config.height != h || this.config.currentPosition != currentPos || this.config.windowStartPosition != scrollerStart)
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Object.assign(this.config, { x, y, width: w, height: h, currentPosition: currentPos, windowStartPosition: scrollerStart });
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if (!this.isValid) {
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this.eventElement.style.display = 'none';
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return;
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}
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this.ctx.save();
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@@ -86,12 +96,24 @@ export class MSAScrollingHeader {
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// Calculate slider position on the bar
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const totalSliderRange = this.config.totalPositions - visiblePositionsN;
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const sliderStartPX = totalSliderRange <= 0 ? 0 :
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windowStart / (this.config.totalPositions) * canvasWidth;
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windowStart / (this.config.totalPositions) * (canvasWidth - this.sliderWidth);
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const sliderLengthPX = totalSliderRange <= 0 ? canvasWidth :
|
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this.sliderWidth;
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// Draw slider window (darker rectangle)
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this.ctx.fillStyle = 'rgba(150, 150, 150, 0.5)';
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this.ctx.fillRect(sliderStartPX, sliderTop, sliderLengthPX, this.config.sliderHeight);
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if (this.config.currentPosition >= 1 && this.config.currentPosition <= this.config.totalPositions) {
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// Calculate the position of the current selection as a proportion of total sequence
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const currentPositionRatio = (this.config.currentPosition - 1) / (this.config.totalPositions - 1);
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const notchX = Math.round(currentPositionRatio * canvasWidth);
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// Draw a 3px thick vertical green marker at this position
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this.ctx.fillStyle = '#3CB173'; // Same green as the cell highlight
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this.ctx.fillRect(notchX - 1, // Center the 3px marker on the calculated position
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sliderTop - 2, // Extend the marker 2px above the scrollbar
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3, // 3px width as requested
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this.config.sliderHeight + 4 // Make the marker taller than the scrollbar
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+
);
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}
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// Draw position marks and indices
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for (let i = 0; i < visiblePositionsN; i++) {
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const position = windowStart + i;
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@@ -117,10 +139,10 @@ export class MSAScrollingHeader {
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this.ctx.beginPath();
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this.ctx.arc(cellCenterX, posIndexTop * 2, 1, 0, Math.PI * 2);
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this.ctx.fill();
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-
// Draw position number for every 10th position
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-
if (position % 10 === 0) {
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+
// Draw position number for every 10th position, on the current position and also make sure that the number is not obstructed by some other numbers
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|
+
if (position === this.config.currentPosition || ((position === 1 || position % 10 === 0) && Math.abs(position - this.config.currentPosition) > 1)) {
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this.ctx.fillStyle = '#333333';
|
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123
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-
this.ctx.font = '
|
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+
this.ctx.font = '12px monospace';
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this.ctx.textAlign = 'center';
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this.ctx.textBaseline = 'middle';
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this.ctx.fillText(position.toString(), cellCenterX, posIndexTop * 4);
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@@ -128,12 +150,19 @@ export class MSAScrollingHeader {
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128
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// Highlight current selected position with square marker
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151
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// if current is outside the range, draw it at the end
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if (position === this.config.currentPosition) {
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-
// Draw
|
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|
-
this.ctx.fillStyle = '
|
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153
|
+
// Draw filled background with 50% opacity
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|
+
this.ctx.fillStyle = 'rgba(60, 177, 115, 0.2)';
|
|
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this.ctx.fillRect(x, 0, cellWidth, sliderTop);
|
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}
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}
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this.ctx.restore();
|
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159
|
+
// Prevent default behavior if in header area
|
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|
+
preventable.preventDefault();
|
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161
|
+
this.eventElement.style.display = 'block';
|
|
162
|
+
this.eventElement.style.left = `${this.config.x}px`;
|
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163
|
+
this.eventElement.style.top = `${this.config.y}px`;
|
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164
|
+
this.eventElement.style.width = `${this.config.width}px`;
|
|
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|
+
this.eventElement.style.height = `${this.config.height}px`;
|
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137
166
|
}
|
|
138
167
|
getCoords(e) {
|
|
139
168
|
const rect = this.canvas.getBoundingClientRect();
|
|
@@ -145,21 +174,27 @@ export class MSAScrollingHeader {
|
|
|
145
174
|
const { x, y } = this.getCoords(e);
|
|
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|
return x >= 0 && x <= this.config.width && y >= 0 && y <= this.config.headerHeight;
|
|
147
176
|
}
|
|
177
|
+
get positionWidth() {
|
|
178
|
+
return this.config.positionWidth;
|
|
179
|
+
}
|
|
180
|
+
set positionWidth(value) {
|
|
181
|
+
this.config.positionWidth = value;
|
|
182
|
+
}
|
|
148
183
|
isInSliderArea(e) {
|
|
149
|
-
const {
|
|
184
|
+
const { y } = this.getCoords(e);
|
|
150
185
|
const sliderTop = this.config.headerHeight - this.config.sliderHeight;
|
|
151
186
|
return y > sliderTop && y < sliderTop + this.config.sliderHeight;
|
|
152
187
|
}
|
|
153
188
|
get sliderWidth() {
|
|
154
189
|
const pseudoPositionWidth = this.config.width / this.config.totalPositions;
|
|
155
190
|
const w = pseudoPositionWidth * (this.config.width / this.config.positionWidth);
|
|
156
|
-
return Math.max(w,
|
|
191
|
+
return Math.max(w, 20);
|
|
157
192
|
}
|
|
158
193
|
isInSliderDraggableArea(e) {
|
|
159
194
|
const { x, y } = this.getCoords(e);
|
|
160
195
|
const sliderTop = this.config.headerHeight - this.config.sliderHeight;
|
|
161
196
|
const startSeqX = this.config.windowStartPosition;
|
|
162
|
-
const pseudoPositionWidth = this.config.width / this.config.totalPositions;
|
|
197
|
+
const pseudoPositionWidth = (this.config.width - this.sliderWidth) / this.config.totalPositions;
|
|
163
198
|
const startSliderXPX = (startSeqX - 1) * pseudoPositionWidth;
|
|
164
199
|
const endSliderXPX = startSliderXPX + this.sliderWidth;
|
|
165
200
|
return y > sliderTop && y < sliderTop + this.config.sliderHeight && x >= startSliderXPX && x < endSliderXPX;
|
|
@@ -169,7 +204,7 @@ export class MSAScrollingHeader {
|
|
|
169
204
|
* @param {MouseEvent} e - Mouse event
|
|
170
205
|
*/
|
|
171
206
|
handleMouseDown(e) {
|
|
172
|
-
if (!this.
|
|
207
|
+
if (!this.isValid)
|
|
173
208
|
return;
|
|
174
209
|
const { x } = this.getCoords(e);
|
|
175
210
|
if (this.isInSliderDraggableArea(e)) {
|
|
@@ -182,16 +217,23 @@ export class MSAScrollingHeader {
|
|
|
182
217
|
}
|
|
183
218
|
}
|
|
184
219
|
handleMouseWheel(e) {
|
|
185
|
-
if (!this.
|
|
220
|
+
if (!this.isValid)
|
|
186
221
|
return;
|
|
187
222
|
if (this.isInHeaderArea(e)) {
|
|
188
223
|
e.preventDefault();
|
|
189
224
|
e.stopPropagation();
|
|
190
225
|
e.stopImmediatePropagation();
|
|
191
|
-
|
|
192
|
-
|
|
193
|
-
|
|
194
|
-
|
|
226
|
+
// Determine scroll direction and amount
|
|
227
|
+
// Use deltaX if available (for horizontal scrolling devices)
|
|
228
|
+
// otherwise use deltaY with shift key for horizontal scroll
|
|
229
|
+
const delta = e.shiftKey ? Math.sign(e.deltaY) : Math.sign(e.deltaX || e.deltaY);
|
|
230
|
+
// Move by 1 position or more for faster scrolling (optional)
|
|
231
|
+
const scrollSpeed = e.shiftKey ? 3 : 1; // Faster scrolling with shift
|
|
232
|
+
const newStartPosition = this.config.windowStartPosition + (delta * scrollSpeed);
|
|
233
|
+
// Clamp to valid range
|
|
234
|
+
const visiblePositions = Math.floor(this.config.width / this.config.positionWidth);
|
|
235
|
+
const maxStart = this.config.totalPositions - visiblePositions + 1;
|
|
236
|
+
this.config.windowStartPosition = Math.max(1, Math.min(maxStart, newStartPosition));
|
|
195
237
|
if (typeof this.config.onPositionChange === 'function')
|
|
196
238
|
this.config.onPositionChange(this.config.currentPosition, this.getWindowRange());
|
|
197
239
|
}
|
|
@@ -201,7 +243,7 @@ export class MSAScrollingHeader {
|
|
|
201
243
|
* @param {MouseEvent} e - Mouse event
|
|
202
244
|
*/
|
|
203
245
|
handleMouseMove(e) {
|
|
204
|
-
if (!this.state.isDragging || !this.
|
|
246
|
+
if (!this.state.isDragging || !this.isValid)
|
|
205
247
|
return;
|
|
206
248
|
const rect = this.canvas.getBoundingClientRect();
|
|
207
249
|
const x = e.clientX - rect.left - this.config.x;
|
|
@@ -210,6 +252,42 @@ export class MSAScrollingHeader {
|
|
|
210
252
|
e.stopPropagation();
|
|
211
253
|
e.stopImmediatePropagation();
|
|
212
254
|
}
|
|
255
|
+
handleKeyDown(e) {
|
|
256
|
+
if (!this.isValid || this.config.currentPosition < 1)
|
|
257
|
+
return;
|
|
258
|
+
if (e.key === 'ArrowLeft' || e.key === 'ArrowRight') {
|
|
259
|
+
e.preventDefault();
|
|
260
|
+
e.stopPropagation();
|
|
261
|
+
e.stopImmediatePropagation();
|
|
262
|
+
// Determine scroll direction
|
|
263
|
+
const delta = e.key === 'ArrowLeft' ? -1 : 1;
|
|
264
|
+
const newPosition = Math.min(Math.max(this.config.currentPosition + delta, 1), this.config.totalPositions);
|
|
265
|
+
if (newPosition === this.config.currentPosition)
|
|
266
|
+
return;
|
|
267
|
+
this.config.currentPosition = newPosition;
|
|
268
|
+
// make sure that the cureent position is visible
|
|
269
|
+
const visiblePositions = Math.floor(this.config.width / this.config.positionWidth);
|
|
270
|
+
const start = this.config.windowStartPosition;
|
|
271
|
+
const end = start + visiblePositions - 1;
|
|
272
|
+
if (newPosition < start || newPosition > end) {
|
|
273
|
+
if (delta < 0)
|
|
274
|
+
this.config.windowStartPosition = newPosition;
|
|
275
|
+
else
|
|
276
|
+
this.config.windowStartPosition = Math.max(1, newPosition - visiblePositions + 1);
|
|
277
|
+
}
|
|
278
|
+
}
|
|
279
|
+
else if (e.key === 'Escape') {
|
|
280
|
+
// reset the current position
|
|
281
|
+
this.config.currentPosition = -2;
|
|
282
|
+
e.preventDefault();
|
|
283
|
+
e.stopPropagation();
|
|
284
|
+
e.stopImmediatePropagation();
|
|
285
|
+
}
|
|
286
|
+
else
|
|
287
|
+
return;
|
|
288
|
+
if (typeof this.config.onPositionChange === 'function')
|
|
289
|
+
this.config.onPositionChange(this.config.currentPosition, this.getWindowRange());
|
|
290
|
+
}
|
|
213
291
|
/**
|
|
214
292
|
* Handle mouse up (end dragging)
|
|
215
293
|
*/
|
|
@@ -221,49 +299,55 @@ export class MSAScrollingHeader {
|
|
|
221
299
|
* @param {number} x - X position of mouse
|
|
222
300
|
*/
|
|
223
301
|
handleSliderDrag(x) {
|
|
224
|
-
if (!this.
|
|
302
|
+
if (!this.isValid)
|
|
225
303
|
return;
|
|
304
|
+
const sliderWidth = this.sliderWidth;
|
|
226
305
|
// Calculate the position based on the drag position
|
|
227
|
-
const canvasWidth = this.config.width;
|
|
228
|
-
const
|
|
229
|
-
|
|
230
|
-
const
|
|
231
|
-
const
|
|
232
|
-
|
|
306
|
+
const canvasWidth = this.config.width - sliderWidth;
|
|
307
|
+
const normalizedX = Math.max(0, Math.min(this.config.width, x));
|
|
308
|
+
// this shows how many positions are in one pixel
|
|
309
|
+
const pseudoPositionWidth = canvasWidth / this.config.totalPositions;
|
|
310
|
+
const fittedPositions = Math.floor(this.config.width / this.config.positionWidth);
|
|
311
|
+
// we add these positions so that it feels like we are grabbing the slider by its center
|
|
312
|
+
this.config.windowStartPosition = Math.max(1, Math.min(Math.round((normalizedX - sliderWidth / 2) / pseudoPositionWidth), this.config.totalPositions - fittedPositions + 1));
|
|
233
313
|
// Call callback if defined
|
|
234
314
|
if (typeof this.config.onPositionChange === 'function')
|
|
235
315
|
this.config.onPositionChange(this.config.currentPosition, this.getWindowRange());
|
|
236
|
-
|
|
316
|
+
}
|
|
317
|
+
get headerHeight() {
|
|
318
|
+
return this.config.headerHeight;
|
|
319
|
+
}
|
|
320
|
+
/** Soft setting of header hight, without redrawing or update event
|
|
321
|
+
* @param {number} value - New header height
|
|
322
|
+
*/
|
|
323
|
+
set headerHeight(value) {
|
|
324
|
+
this.config.headerHeight = value;
|
|
237
325
|
}
|
|
238
326
|
/**
|
|
239
327
|
* Handle click on positions
|
|
240
328
|
* @param {MouseEvent} e - Mouse event
|
|
241
329
|
*/
|
|
242
|
-
handleClick(
|
|
243
|
-
|
|
244
|
-
|
|
245
|
-
//
|
|
246
|
-
|
|
247
|
-
|
|
248
|
-
|
|
249
|
-
|
|
250
|
-
|
|
251
|
-
|
|
252
|
-
|
|
253
|
-
|
|
254
|
-
|
|
255
|
-
|
|
256
|
-
|
|
257
|
-
|
|
258
|
-
|
|
259
|
-
|
|
260
|
-
|
|
261
|
-
|
|
262
|
-
|
|
263
|
-
// if (typeof this.config.onPositionChange === 'function')
|
|
264
|
-
// this.config.onPositionChange(this.config.currentPosition, this.getWindowRange());
|
|
265
|
-
// }
|
|
266
|
-
// }
|
|
330
|
+
handleClick(e) {
|
|
331
|
+
if (!this.isValid)
|
|
332
|
+
return;
|
|
333
|
+
// Get calculated coordinates
|
|
334
|
+
const { x, y } = this.getCoords(e);
|
|
335
|
+
const sliderTop = this.config.headerHeight - this.config.sliderHeight;
|
|
336
|
+
if (y < sliderTop && y >= 0) {
|
|
337
|
+
// Calculate which position was clicked
|
|
338
|
+
const cellWidth = this.config.positionWidth;
|
|
339
|
+
const clickedCellIndex = Math.round(x / cellWidth - 0.5);
|
|
340
|
+
// Calculate actual position in sequence
|
|
341
|
+
const windowStart = this.config.windowStartPosition;
|
|
342
|
+
const clickedPosition = windowStart + clickedCellIndex;
|
|
343
|
+
// Update current position if valid
|
|
344
|
+
if (clickedPosition >= 1 && clickedPosition <= this.config.totalPositions) {
|
|
345
|
+
this.config.currentPosition = clickedPosition;
|
|
346
|
+
// Call callback if defined
|
|
347
|
+
if (typeof this.config.onPositionChange === 'function')
|
|
348
|
+
this.config.onPositionChange(this.config.currentPosition, this.getWindowRange());
|
|
349
|
+
}
|
|
350
|
+
}
|
|
267
351
|
}
|
|
268
352
|
/**
|
|
269
353
|
* Get the current window range
|
|
@@ -1 +1 @@
|
|
|
1
|
-
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