@datagrok-libraries/bio 5.51.0 → 5.51.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
package/CHANGELOG.md CHANGED
@@ -1,5 +1,9 @@
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  # bio changelog
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+ ## 5.51.1 (2025-04-22)
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+
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+ Update weblogo defaults
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+
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  ## 5.51.0 (2025-04-08)
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  To Atomic level fixes for terminal monomers with 1 R group, wrongly configured r-groups and incorrect notations
package/package.json CHANGED
@@ -8,7 +8,7 @@
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  "access": "public"
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  },
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  "friendlyName": "Datagrok bio library",
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- "version": "5.51.0",
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+ "version": "5.51.1",
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  "description": "Bio utilities, types supporting Macromolecule, Molecule3D data",
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  "dependencies": {
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  "@datagrok-libraries/chem-meta": "^1.2.7",
@@ -54,7 +54,8 @@ export declare const WebLogoPropsDefault: {
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  fixWidth: boolean;
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  fitArea: boolean;
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  minHeight: number;
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- maxHeight: number;
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+ maxHeight: number | null;
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+ maxMonomerLetters: number;
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  showPositionLabels: boolean;
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  positionMarginState: PositionMarginStates;
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  positionMargin: number;
@@ -1 +1 @@
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- {"version":3,"file":"web-logo.d.ts","sourceRoot":"","sources":["web-logo.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAEtC,OAAO,EAAC,UAAU,EAAC,MAAM,MAAM,CAAC;AAEhC,OAAO,EAAC,OAAO,EAAC,MAAM,UAAU,CAAC;AAEjC,oBAAY,IAAI;IACd,6EAA6E;IAC7E,cAAc,oBAAoB;CACnC;AAED,oBAAY,cAAc;IACxB,OAAO,YAAY;IACnB,IAAI,SAAS;CACd;AAED,0BAA0B;AAC1B,oBAAY,kBAAkB;IAC5B,GAAG,QAAQ;IACX,MAAM,WAAW;IACjB,MAAM,WAAW;CAClB;AAED,0BAA0B;AAC1B,oBAAY,oBAAoB;IAC9B,IAAI,SAAS;IACb,MAAM,WAAW;IACjB,KAAK,UAAU;CAChB;AAED,oBAAY,oBAAoB;IAC9B,IAAI,SAAS;IACb,EAAE,OAAO;IACT,GAAG,QAAQ;CACZ;AAED,qEAAqE;AACrE,oBAAY,aAAa;IACvB,0DAA0D;IAC1D,QAAQ,aAAa;IACrB;;OAEG;IACH,QAAQ,aAAa;CACtB;AAED,eAAO,MAAM,mBAAmB;wBAEV,MAAM,GAAG,IAAI;IACjC,iEAAiE;mBAClD,EAAE,CAAC,eAAe;IACjC,6BAA6B;qBACZ,MAAM;uBACJ,MAAM,GAAG,IAAI;qBACf,MAAM,GAAG,IAAI;wBACV,OAAO;wBACP,OAAO;qBACV,OAAO;qBAGP,MAAM;oBACP,MAAM;mBACP,MAAM;uBAGF,kBAAkB;yBAChB,oBAAoB;cAC/B,OAAO;aACR,OAAO;eACL,MAAM;eACN,MAAM;wBACG,OAAO;yBACN,oBAAoB;oBACzB,MAAM;kBAGR,aAAa;CAC1B,CAAC;AAEJ,MAAM,MAAM,YAAY,GAAG,OAAO,mBAAmB,CAAC;AAEtD,MAAM,WAAW,cAAe,SAAQ,YAAY,EAAE,OAAO;IAC3D,IAAI,aAAa,IAAI,UAAU,CAAC,IAAI,CAAC,CAAC;IAEtC,IAAI,mBAAmB,IAAI,MAAM,CAAC;IAElC,UAAU,CAAC,OAAO,EAAE,OAAO,CAAC,YAAY,CAAC,GAAG,IAAI,CAAC;CAClD;AAED,eAAO,MAAM,UAAU,EAAE,MAAwB,CAAC;AAElD,OAAO,QAAQ,iBAAiB,CAAC;IAC/B,UAAiB,mBAAmB;QAClC,QAAQ,CAAC,UAAU,EAAE,SAAS,EAAE,OAAO,EAAE,OAAO,CAAC,YAAY,CAAC,GAAG,OAAO,CAAC,EAAE,CAAC,MAAM,CAAC,YAAY,CAAC,GAAG,cAAc,CAAC,CAAC;KACpH;CACF"}
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+ {"version":3,"file":"web-logo.d.ts","sourceRoot":"","sources":["web-logo.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAEtC,OAAO,EAAC,UAAU,EAAC,MAAM,MAAM,CAAC;AAEhC,OAAO,EAAC,OAAO,EAAC,MAAM,UAAU,CAAC;AAEjC,oBAAY,IAAI;IACd,6EAA6E;IAC7E,cAAc,oBAAoB;CACnC;AAED,oBAAY,cAAc;IACxB,OAAO,YAAY;IACnB,IAAI,SAAS;CACd;AAED,0BAA0B;AAC1B,oBAAY,kBAAkB;IAC5B,GAAG,QAAQ;IACX,MAAM,WAAW;IACjB,MAAM,WAAW;CAClB;AAED,0BAA0B;AAC1B,oBAAY,oBAAoB;IAC9B,IAAI,SAAS;IACb,MAAM,WAAW;IACjB,KAAK,UAAU;CAChB;AAED,oBAAY,oBAAoB;IAC9B,IAAI,SAAS;IACb,EAAE,OAAO;IACT,GAAG,QAAQ;CACZ;AAED,qEAAqE;AACrE,oBAAY,aAAa;IACvB,0DAA0D;IAC1D,QAAQ,aAAa;IACrB;;OAEG;IACH,QAAQ,aAAa;CACtB;AAED,eAAO,MAAM,mBAAmB;wBAEV,MAAM,GAAG,IAAI;IACjC,iEAAiE;mBAClD,EAAE,CAAC,eAAe;IACjC,6BAA6B;qBACZ,MAAM;uBACJ,MAAM,GAAG,IAAI;qBACf,MAAM,GAAG,IAAI;wBACV,OAAO;wBACP,OAAO;qBACV,OAAO;qBAGP,MAAM;oBACP,MAAM;mBACP,MAAM;uBAGF,kBAAkB;yBAChB,oBAAoB;cAC/B,OAAO;aACR,OAAO;eACL,MAAM;eACN,MAAM,GAAG,IAAI;uBACL,MAAM;wBACL,OAAO;yBACN,oBAAoB;oBACzB,MAAM;kBAGR,aAAa;CAC1B,CAAC;AAEJ,MAAM,MAAM,YAAY,GAAG,OAAO,mBAAmB,CAAC;AAEtD,MAAM,WAAW,cAAe,SAAQ,YAAY,EAAE,OAAO;IAC3D,IAAI,aAAa,IAAI,UAAU,CAAC,IAAI,CAAC,CAAC;IAEtC,IAAI,mBAAmB,IAAI,MAAM,CAAC;IAElC,UAAU,CAAC,OAAO,EAAE,OAAO,CAAC,YAAY,CAAC,GAAG,IAAI,CAAC;CAClD;AAED,eAAO,MAAM,UAAU,EAAE,MAAwB,CAAC;AAElD,OAAO,QAAQ,iBAAiB,CAAC;IAC/B,UAAiB,mBAAmB;QAClC,QAAQ,CAAC,UAAU,EAAE,SAAS,EAAE,OAAO,EAAE,OAAO,CAAC,YAAY,CAAC,GAAG,OAAO,CAAC,EAAE,CAAC,MAAM,CAAC,YAAY,CAAC,GAAG,cAAc,CAAC,CAAC;KACpH;CACF"}
@@ -55,14 +55,15 @@ export const WebLogoPropsDefault = new class {
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  // -- Style --
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  this.backgroundColor = 0xFFFFFFFF;
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  this.positionHeight = PositionHeight.Entropy; // that is the way in the bioinformatics domain
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- this.positionWidth = 16;
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+ this.positionWidth = 20;
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  // -- Layout --
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  this.verticalAlignment = VerticalAlignments.MIDDLE;
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  this.horizontalAlignment = HorizontalAlignments.CENTER;
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  this.fixWidth = false;
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  this.fitArea = true;
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- this.minHeight = 50;
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- this.maxHeight = 100;
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+ this.minHeight = 25;
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+ this.maxHeight = 300;
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+ this.maxMonomerLetters = 5;
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  this.showPositionLabels = true;
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  this.positionMarginState = PositionMarginStates.AUTO;
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  this.positionMargin = 0;
@@ -1 +1 @@
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- {"version":3,"file":"web-logo.js","sourceRoot":"","sources":["web-logo.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAMtC,MAAM,CAAN,IAAY,IAGX;AAHD,WAAY,IAAI;IACd,6EAA6E;IAC7E,0CAAkC,CAAA;AACpC,CAAC,EAHW,IAAI,KAAJ,IAAI,QAGf;AAED,MAAM,CAAN,IAAY,cAGX;AAHD,WAAY,cAAc;IACxB,qCAAmB,CAAA;IACnB,+BAAa,CAAA;AACf,CAAC,EAHW,cAAc,KAAd,cAAc,QAGzB;AAED,0BAA0B;AAC1B,MAAM,CAAN,IAAY,kBAIX;AAJD,WAAY,kBAAkB;IAC5B,iCAAW,CAAA;IACX,uCAAiB,CAAA;IACjB,uCAAiB,CAAA;AACnB,CAAC,EAJW,kBAAkB,KAAlB,kBAAkB,QAI7B;AAED,0BAA0B;AAC1B,MAAM,CAAN,IAAY,oBAIX;AAJD,WAAY,oBAAoB;IAC9B,qCAAa,CAAA;IACb,yCAAiB,CAAA;IACjB,uCAAe,CAAA;AACjB,CAAC,EAJW,oBAAoB,KAApB,oBAAoB,QAI/B;AAED,MAAM,CAAN,IAAY,oBAIX;AAJD,WAAY,oBAAoB;IAC9B,qCAAa,CAAA;IACb,iCAAS,CAAA;IACT,mCAAW,CAAA;AACb,CAAC,EAJW,oBAAoB,KAApB,oBAAoB,QAI/B;AAED,qEAAqE;AACrE,MAAM,CAAN,IAAY,aAOX;AAPD,WAAY,aAAa;IACvB,0DAA0D;IAC1D,sCAAqB,CAAA;IACrB;;OAEG;IACH,sCAAqB,CAAA;AACvB,CAAC,EAPW,aAAa,KAAb,aAAa,QAOxB;AAED,MAAM,CAAC,MAAM,mBAAmB,GAAG,IAAI;IAAA;QACrC,aAAa;QACb,uBAAkB,GAAkB,IAAI,CAAC;QACzC,iEAAiE;QACjE,kBAAa,GAAuB,EAAE,CAAC,GAAG,CAAC,WAAW,CAAC;QACvD,6BAA6B;QAC7B,oBAAe,GAAW,UAAU,CAAC;QACrC,sBAAiB,GAAkB,IAAI,CAAC;QACxC,oBAAe,GAAkB,IAAI,CAAC;QACtC,uBAAkB,GAAY,IAAI,CAAC;QACnC,uBAAkB,GAAY,KAAK,CAAC;QACpC,oBAAe,GAAY,IAAI,CAAC;QAEhC,cAAc;QACd,oBAAe,GAAW,UAAU,CAAC;QACrC,mBAAc,GAAW,cAAc,CAAC,OAAO,CAAC,CAAC,+CAA+C;QAChG,kBAAa,GAAW,EAAE,CAAC;QAE3B,eAAe;QACf,sBAAiB,GAAuB,kBAAkB,CAAC,MAAM,CAAC;QAClE,wBAAmB,GAAyB,oBAAoB,CAAC,MAAM,CAAC;QACxE,aAAQ,GAAY,KAAK,CAAC;QAC1B,YAAO,GAAY,IAAI,CAAC;QACxB,cAAS,GAAW,EAAE,CAAC;QACvB,cAAS,GAAW,GAAG,CAAC;QACxB,uBAAkB,GAAY,IAAI,CAAC;QACnC,wBAAmB,GAAyB,oBAAoB,CAAC,IAAI,CAAC;QACtE,mBAAc,GAAW,CAAC,CAAC;QAE3B,iBAAiB;QACjB,iBAAY,GAAkB,aAAa,CAAC,QAAQ,CAAC;IACvD,CAAC;CAAA,EAAE,CAAC;AAYJ,MAAM,CAAC,MAAM,UAAU,GAAW,eAAe,CAAC"}
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+ {"version":3,"file":"web-logo.js","sourceRoot":"","sources":["web-logo.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAMtC,MAAM,CAAN,IAAY,IAGX;AAHD,WAAY,IAAI;IACd,6EAA6E;IAC7E,0CAAkC,CAAA;AACpC,CAAC,EAHW,IAAI,KAAJ,IAAI,QAGf;AAED,MAAM,CAAN,IAAY,cAGX;AAHD,WAAY,cAAc;IACxB,qCAAmB,CAAA;IACnB,+BAAa,CAAA;AACf,CAAC,EAHW,cAAc,KAAd,cAAc,QAGzB;AAED,0BAA0B;AAC1B,MAAM,CAAN,IAAY,kBAIX;AAJD,WAAY,kBAAkB;IAC5B,iCAAW,CAAA;IACX,uCAAiB,CAAA;IACjB,uCAAiB,CAAA;AACnB,CAAC,EAJW,kBAAkB,KAAlB,kBAAkB,QAI7B;AAED,0BAA0B;AAC1B,MAAM,CAAN,IAAY,oBAIX;AAJD,WAAY,oBAAoB;IAC9B,qCAAa,CAAA;IACb,yCAAiB,CAAA;IACjB,uCAAe,CAAA;AACjB,CAAC,EAJW,oBAAoB,KAApB,oBAAoB,QAI/B;AAED,MAAM,CAAN,IAAY,oBAIX;AAJD,WAAY,oBAAoB;IAC9B,qCAAa,CAAA;IACb,iCAAS,CAAA;IACT,mCAAW,CAAA;AACb,CAAC,EAJW,oBAAoB,KAApB,oBAAoB,QAI/B;AAED,qEAAqE;AACrE,MAAM,CAAN,IAAY,aAOX;AAPD,WAAY,aAAa;IACvB,0DAA0D;IAC1D,sCAAqB,CAAA;IACrB;;OAEG;IACH,sCAAqB,CAAA;AACvB,CAAC,EAPW,aAAa,KAAb,aAAa,QAOxB;AAED,MAAM,CAAC,MAAM,mBAAmB,GAAG,IAAI;IAAA;QACrC,aAAa;QACb,uBAAkB,GAAkB,IAAI,CAAC;QACzC,iEAAiE;QACjE,kBAAa,GAAuB,EAAE,CAAC,GAAG,CAAC,WAAW,CAAC;QACvD,6BAA6B;QAC7B,oBAAe,GAAW,UAAU,CAAC;QACrC,sBAAiB,GAAkB,IAAI,CAAC;QACxC,oBAAe,GAAkB,IAAI,CAAC;QACtC,uBAAkB,GAAY,IAAI,CAAC;QACnC,uBAAkB,GAAY,KAAK,CAAC;QACpC,oBAAe,GAAY,IAAI,CAAC;QAEhC,cAAc;QACd,oBAAe,GAAW,UAAU,CAAC;QACrC,mBAAc,GAAW,cAAc,CAAC,OAAO,CAAC,CAAC,+CAA+C;QAChG,kBAAa,GAAW,EAAE,CAAC;QAE3B,eAAe;QACf,sBAAiB,GAAuB,kBAAkB,CAAC,MAAM,CAAC;QAClE,wBAAmB,GAAyB,oBAAoB,CAAC,MAAM,CAAC;QACxE,aAAQ,GAAY,KAAK,CAAC;QAC1B,YAAO,GAAY,IAAI,CAAC;QACxB,cAAS,GAAW,EAAE,CAAC;QACvB,cAAS,GAAkB,GAAG,CAAC;QAC/B,sBAAiB,GAAW,CAAC,CAAC;QAC9B,uBAAkB,GAAY,IAAI,CAAC;QACnC,wBAAmB,GAAyB,oBAAoB,CAAC,IAAI,CAAC;QACtE,mBAAc,GAAW,CAAC,CAAC;QAE3B,iBAAiB;QACjB,iBAAY,GAAkB,aAAa,CAAC,QAAQ,CAAC;IACvD,CAAC;CAAA,EAAE,CAAC;AAYJ,MAAM,CAAC,MAAM,UAAU,GAAW,eAAe,CAAC"}