@datagrok-libraries/bio 5.5.0 → 5.6.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/index.d.ts +2 -1
- package/index.d.ts.map +1 -1
- package/index.js +3 -2
- package/index.ts +2 -0
- package/package.json +1 -1
- package/src/monomer-works.d.ts +4 -6
- package/src/monomer-works.d.ts.map +1 -1
- package/src/monomer-works.js +6 -32
package/index.d.ts
CHANGED
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@@ -1,5 +1,6 @@
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import { PhylocanvasTreeNode, Newick, Utils, PhylocanvasGL } from '@phylocanvas/phylocanvas.gl';
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import { Aminoacids, AminoacidsPalettes } from './src/aminoacids';
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import { MonomerWorks } from './src/monomer-works';
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import { Nucleotides, NucleotidesPalettes } from './src/nucleotides';
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import { SeqPalette, SeqPaletteBase } from './src/seq-palettes';
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import { IMonomerLib, Monomer } from './src/types';
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@@ -16,5 +17,5 @@ import { VdRegion, VdRegionType } from './src/vd-regions';
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import { IPhylocanvasGlViewer, NodeStyleType, StylesType } from './src/viewers/phylocanvas-gl-viewer';
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import { IVdRegionsViewer } from './src/viewers/vd-regions-viewer';
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import { PositionHeight, PositionInfo, PositionMonomerInfo, WebLogoViewer } from './src/viewers/web-logo-viewer';
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-
export { ALIGNMENT, ALPHABET, NOTATION, TAGS, NotationConverter, SplitterFunc, getStats, getAlphabetSimilarity, getSplitter, splitterAsFasta, splitterAsHelm, getSplitterForColumn, monomerToShort, splitAlignedSequences, SeqPalette, SeqPaletteBase, Aminoacids, AminoacidsPalettes, Nucleotides, NucleotidesPalettes, UnknownSeqPalettes, UnknownSeqPalette, pickUpPalette, getPaletteByType, PositionHeight, PositionInfo, PositionMonomerInfo, WebLogoViewer, UnitsHandler, DrawStyle, printLeftOrCentered, FastaFileHandler, VdRegionType, VdRegion, IVdRegionsViewer, PhylocanvasTreeNode, NodeStyleType, StylesType, IPhylocanvasGlViewer, PhylocanvasGL, Utils, Newick, INewickHelper, Monomer, IMonomerLib, getMonomerLib, };
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export { ALIGNMENT, ALPHABET, NOTATION, TAGS, NotationConverter, SplitterFunc, getStats, getAlphabetSimilarity, getSplitter, splitterAsFasta, splitterAsHelm, getSplitterForColumn, monomerToShort, splitAlignedSequences, SeqPalette, SeqPaletteBase, Aminoacids, AminoacidsPalettes, Nucleotides, NucleotidesPalettes, UnknownSeqPalettes, UnknownSeqPalette, pickUpPalette, getPaletteByType, PositionHeight, PositionInfo, PositionMonomerInfo, WebLogoViewer, UnitsHandler, DrawStyle, printLeftOrCentered, FastaFileHandler, VdRegionType, VdRegion, IVdRegionsViewer, PhylocanvasTreeNode, NodeStyleType, StylesType, IPhylocanvasGlViewer, PhylocanvasGL, Utils, Newick, INewickHelper, Monomer, IMonomerLib, getMonomerLib, MonomerWorks, };
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//# sourceMappingURL=index.d.ts.map
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package/index.d.ts.map
CHANGED
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@@ -1 +1 @@
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-
{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["index.ts"],"names":[],"mappings":"AACA,OAAO,EAAC,mBAAmB,EAAE,MAAM,EAAE,KAAK,EAAE,aAAa,EAAC,MAAM,6BAA6B,CAAC;AAE9F,OAAO,EAAC,UAAU,EAAE,kBAAkB,EAAC,MAAM,kBAAkB,CAAC;AAChE,OAAO,EAAC,WAAW,EAAE,mBAAmB,EAAC,MAAM,mBAAmB,CAAC;AACnE,OAAO,EAAC,UAAU,EAAE,cAAc,EAAC,MAAM,oBAAoB,CAAC;AAC9D,OAAO,EAAC,WAAW,EAAE,OAAO,EAAC,MAAM,aAAa,CAAC;AACjD,OAAO,EAAC,iBAAiB,EAAE,kBAAkB,EAAC,MAAM,eAAe,CAAC;AACpE,OAAO,EAAC,SAAS,EAAE,mBAAmB,EAAC,MAAM,2BAA2B,CAAC;AACzE,OAAO,EAAC,gBAAgB,EAAC,MAAM,2BAA2B,CAAC;AAC3D,OAAO,EACL,WAAW,EACX,eAAe,EACf,oBAAoB,EACpB,YAAY,EACZ,cAAc,EACd,cAAc,EACd,QAAQ,EACR,aAAa,EACb,gBAAgB,EAChB,qBAAqB,EACrB,QAAQ,EACR,QAAQ,EACR,IAAI,EACJ,SAAS,EACV,MAAM,2BAA2B,CAAC;AACnC,OAAO,EAAC,aAAa,EAAC,MAAM,yBAAyB,CAAC;AACtD,OAAO,EAAC,aAAa,EAAC,MAAM,2BAA2B,CAAC;AACxD,OAAO,EAAC,iBAAiB,EAAC,MAAM,gCAAgC,CAAC;AACjE,OAAO,EAAC,qBAAqB,EAAC,MAAM,sBAAsB,CAAC;AAC3D,OAAO,EAAC,YAAY,EAAC,MAAM,2BAA2B,CAAC;AACvD,OAAO,EAAC,QAAQ,EAAE,YAAY,EAAC,MAAM,kBAAkB,CAAC;AACxD,OAAO,EAAC,oBAAoB,EAAE,aAAa,EAAE,UAAU,EAAC,MAAM,qCAAqC,CAAC;AACpG,OAAO,EAAC,gBAAgB,EAAC,MAAM,iCAAiC,CAAC;AACjE,OAAO,EAAC,cAAc,EAAE,YAAY,EAAE,mBAAmB,EAAE,aAAa,EAAC,MAAM,+BAA+B,CAAC;AAG/G,OAAO,EACL,SAAS,EACT,QAAQ,EACR,QAAQ,EACR,IAAI,EACJ,iBAAiB,EACjB,YAAY,EACZ,QAAQ,EACR,qBAAqB,EACrB,WAAW,EACX,eAAe,EACf,cAAc,EACd,oBAAoB,EACpB,cAAc,EACd,qBAAqB,EACrB,UAAU,EACV,cAAc,EACd,UAAU,EACV,kBAAkB,EAClB,WAAW,EACX,mBAAmB,EACnB,kBAAkB,EAClB,iBAAiB,EACjB,aAAa,EACb,gBAAgB,EAChB,cAAc,EACd,YAAY,EACZ,mBAAmB,EACnB,aAAa,EACb,YAAY,EACZ,SAAS,EACT,mBAAmB,EACnB,gBAAgB,EAChB,YAAY,EACZ,QAAQ,EACR,gBAAgB,EAChB,mBAAmB,EACnB,aAAa,EAAE,UAAU,EACzB,oBAAoB,EACpB,aAAa,EACb,KAAK,EACL,MAAM,EACN,aAAa,EAEb,OAAO,EACP,WAAW,EACX,aAAa,
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{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["index.ts"],"names":[],"mappings":"AACA,OAAO,EAAC,mBAAmB,EAAE,MAAM,EAAE,KAAK,EAAE,aAAa,EAAC,MAAM,6BAA6B,CAAC;AAE9F,OAAO,EAAC,UAAU,EAAE,kBAAkB,EAAC,MAAM,kBAAkB,CAAC;AAChE,OAAO,EAAC,YAAY,EAAC,MAAM,qBAAqB,CAAC;AACjD,OAAO,EAAC,WAAW,EAAE,mBAAmB,EAAC,MAAM,mBAAmB,CAAC;AACnE,OAAO,EAAC,UAAU,EAAE,cAAc,EAAC,MAAM,oBAAoB,CAAC;AAC9D,OAAO,EAAC,WAAW,EAAE,OAAO,EAAC,MAAM,aAAa,CAAC;AACjD,OAAO,EAAC,iBAAiB,EAAE,kBAAkB,EAAC,MAAM,eAAe,CAAC;AACpE,OAAO,EAAC,SAAS,EAAE,mBAAmB,EAAC,MAAM,2BAA2B,CAAC;AACzE,OAAO,EAAC,gBAAgB,EAAC,MAAM,2BAA2B,CAAC;AAC3D,OAAO,EACL,WAAW,EACX,eAAe,EACf,oBAAoB,EACpB,YAAY,EACZ,cAAc,EACd,cAAc,EACd,QAAQ,EACR,aAAa,EACb,gBAAgB,EAChB,qBAAqB,EACrB,QAAQ,EACR,QAAQ,EACR,IAAI,EACJ,SAAS,EACV,MAAM,2BAA2B,CAAC;AACnC,OAAO,EAAC,aAAa,EAAC,MAAM,yBAAyB,CAAC;AACtD,OAAO,EAAC,aAAa,EAAC,MAAM,2BAA2B,CAAC;AACxD,OAAO,EAAC,iBAAiB,EAAC,MAAM,gCAAgC,CAAC;AACjE,OAAO,EAAC,qBAAqB,EAAC,MAAM,sBAAsB,CAAC;AAC3D,OAAO,EAAC,YAAY,EAAC,MAAM,2BAA2B,CAAC;AACvD,OAAO,EAAC,QAAQ,EAAE,YAAY,EAAC,MAAM,kBAAkB,CAAC;AACxD,OAAO,EAAC,oBAAoB,EAAE,aAAa,EAAE,UAAU,EAAC,MAAM,qCAAqC,CAAC;AACpG,OAAO,EAAC,gBAAgB,EAAC,MAAM,iCAAiC,CAAC;AACjE,OAAO,EAAC,cAAc,EAAE,YAAY,EAAE,mBAAmB,EAAE,aAAa,EAAC,MAAM,+BAA+B,CAAC;AAG/G,OAAO,EACL,SAAS,EACT,QAAQ,EACR,QAAQ,EACR,IAAI,EACJ,iBAAiB,EACjB,YAAY,EACZ,QAAQ,EACR,qBAAqB,EACrB,WAAW,EACX,eAAe,EACf,cAAc,EACd,oBAAoB,EACpB,cAAc,EACd,qBAAqB,EACrB,UAAU,EACV,cAAc,EACd,UAAU,EACV,kBAAkB,EAClB,WAAW,EACX,mBAAmB,EACnB,kBAAkB,EAClB,iBAAiB,EACjB,aAAa,EACb,gBAAgB,EAChB,cAAc,EACd,YAAY,EACZ,mBAAmB,EACnB,aAAa,EACb,YAAY,EACZ,SAAS,EACT,mBAAmB,EACnB,gBAAgB,EAChB,YAAY,EACZ,QAAQ,EACR,gBAAgB,EAChB,mBAAmB,EACnB,aAAa,EAAE,UAAU,EACzB,oBAAoB,EACpB,aAAa,EACb,KAAK,EACL,MAAM,EACN,aAAa,EAEb,OAAO,EACP,WAAW,EACX,aAAa,EACb,YAAY,GACb,CAAC"}
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package/index.js
CHANGED
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@@ -1,6 +1,7 @@
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//@ts-ignore
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import { Newick, Utils, PhylocanvasGL } from '@phylocanvas/phylocanvas.gl';
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import { Aminoacids, AminoacidsPalettes } from './src/aminoacids';
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import { MonomerWorks } from './src/monomer-works';
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import { Nucleotides, NucleotidesPalettes } from './src/nucleotides';
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import { SeqPaletteBase } from './src/seq-palettes';
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import { UnknownSeqPalette, UnknownSeqPalettes } from './src/unknown';
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@@ -13,5 +14,5 @@ import { splitAlignedSequences } from './src/utils/splitter';
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import { UnitsHandler } from './src/utils/units-handler';
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import { VdRegion, VdRegionType } from './src/vd-regions';
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import { PositionHeight, PositionInfo, PositionMonomerInfo, WebLogoViewer } from './src/viewers/web-logo-viewer';
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export { NotationConverter, getStats, getAlphabetSimilarity, getSplitter, splitterAsFasta, splitterAsHelm, getSplitterForColumn, monomerToShort, splitAlignedSequences, SeqPaletteBase, Aminoacids, AminoacidsPalettes, Nucleotides, NucleotidesPalettes, UnknownSeqPalettes, UnknownSeqPalette, pickUpPalette, getPaletteByType, PositionHeight, PositionInfo, PositionMonomerInfo, WebLogoViewer, UnitsHandler, DrawStyle, printLeftOrCentered, FastaFileHandler, VdRegionType, VdRegion, PhylocanvasGL, Utils, Newick, getMonomerLib, };
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//# sourceMappingURL=data:application/json;base64,
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export { NotationConverter, getStats, getAlphabetSimilarity, getSplitter, splitterAsFasta, splitterAsHelm, getSplitterForColumn, monomerToShort, splitAlignedSequences, SeqPaletteBase, Aminoacids, AminoacidsPalettes, Nucleotides, NucleotidesPalettes, UnknownSeqPalettes, UnknownSeqPalette, pickUpPalette, getPaletteByType, PositionHeight, PositionInfo, PositionMonomerInfo, WebLogoViewer, UnitsHandler, DrawStyle, printLeftOrCentered, FastaFileHandler, VdRegionType, VdRegion, PhylocanvasGL, Utils, Newick, getMonomerLib, MonomerWorks, };
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//# sourceMappingURL=data:application/json;base64,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package/index.ts
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import {PhylocanvasTreeNode, Newick, Utils, PhylocanvasGL} from '@phylocanvas/phylocanvas.gl';
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4
4
|
import {Aminoacids, AminoacidsPalettes} from './src/aminoacids';
|
|
5
|
+
import {MonomerWorks} from './src/monomer-works';
|
|
5
6
|
import {Nucleotides, NucleotidesPalettes} from './src/nucleotides';
|
|
6
7
|
import {SeqPalette, SeqPaletteBase} from './src/seq-palettes';
|
|
7
8
|
import {IMonomerLib, Monomer} from './src/types';
|
|
@@ -82,4 +83,5 @@ export {
|
|
|
82
83
|
Monomer,
|
|
83
84
|
IMonomerLib,
|
|
84
85
|
getMonomerLib,
|
|
86
|
+
MonomerWorks,
|
|
85
87
|
};
|
package/package.json
CHANGED
package/src/monomer-works.d.ts
CHANGED
|
@@ -1,9 +1,7 @@
|
|
|
1
|
-
import
|
|
2
|
-
import { IMonomerLib } from './types/index';
|
|
1
|
+
import { IMonomerLib, Monomer } from './types/index';
|
|
3
2
|
export declare class MonomerWorks {
|
|
4
|
-
monomerLib: IMonomerLib
|
|
5
|
-
|
|
6
|
-
|
|
7
|
-
getCappedMonomer(name: string, type: string): string;
|
|
3
|
+
monomerLib: IMonomerLib;
|
|
4
|
+
constructor(monomerLib: IMonomerLib);
|
|
5
|
+
getCappedMonomer(monomerType: string, monomerName: string): Monomer | null;
|
|
8
6
|
}
|
|
9
7
|
//# sourceMappingURL=monomer-works.d.ts.map
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"monomer-works.d.ts","sourceRoot":"","sources":["monomer-works.ts"],"names":[],"mappings":"
|
|
1
|
+
{"version":3,"file":"monomer-works.d.ts","sourceRoot":"","sources":["monomer-works.ts"],"names":[],"mappings":"AAIA,OAAO,EAAC,WAAW,EAAE,OAAO,EAAC,MAAM,eAAe,CAAC;AAInD,qBAAa,YAAY;IACvB,UAAU,EAAE,WAAW,CAAC;gBAEZ,UAAU,EAAE,WAAW;IAK5B,gBAAgB,CAAC,WAAW,EAAE,MAAM,EAAE,WAAW,EAAE,MAAM,GAAG,OAAO,GAAG,IAAI;CAQlF"}
|
package/src/monomer-works.js
CHANGED
|
@@ -1,40 +1,14 @@
|
|
|
1
|
-
var __awaiter = (this && this.__awaiter) || function (thisArg, _arguments, P, generator) {
|
|
2
|
-
function adopt(value) { return value instanceof P ? value : new P(function (resolve) { resolve(value); }); }
|
|
3
|
-
return new (P || (P = Promise))(function (resolve, reject) {
|
|
4
|
-
function fulfilled(value) { try { step(generator.next(value)); } catch (e) { reject(e); } }
|
|
5
|
-
function rejected(value) { try { step(generator["throw"](value)); } catch (e) { reject(e); } }
|
|
6
|
-
function step(result) { result.done ? resolve(result.value) : adopt(result.value).then(fulfilled, rejected); }
|
|
7
|
-
step((generator = generator.apply(thisArg, _arguments || [])).next());
|
|
8
|
-
});
|
|
9
|
-
};
|
|
10
|
-
import * as grok from 'datagrok-api/grok';
|
|
11
|
-
import * as DG from 'datagrok-api/dg';
|
|
12
|
-
import { getMonomerLib } from './utils/monomer-lib';
|
|
13
1
|
export class MonomerWorks {
|
|
14
|
-
constructor() {
|
|
15
|
-
this.monomerLib =
|
|
16
|
-
//Forbid non sequences
|
|
17
|
-
this.sequenceCol = null;
|
|
18
|
-
}
|
|
19
|
-
init(sequenceCol) {
|
|
20
|
-
return __awaiter(this, void 0, void 0, function* () {
|
|
21
|
-
const funcList = DG.Func.find({ package: 'Helm', name: 'getAllLibsData' });
|
|
22
|
-
if (funcList.length === 0)
|
|
23
|
-
yield grok.functions.call('Helm:initHelm');
|
|
24
|
-
this.monomerLib = yield getMonomerLib();
|
|
25
|
-
this.monomerLib.onChanged.subscribe(() => {
|
|
26
|
-
// invalidate something
|
|
27
|
-
});
|
|
28
|
-
this.sequenceCol = sequenceCol;
|
|
29
|
-
});
|
|
2
|
+
constructor(monomerLib) {
|
|
3
|
+
this.monomerLib = monomerLib;
|
|
30
4
|
}
|
|
31
5
|
//types according to Monomer possible
|
|
32
|
-
getCappedMonomer(
|
|
6
|
+
getCappedMonomer(monomerType, monomerName) {
|
|
33
7
|
const types = Object.keys(this.monomerLib);
|
|
34
|
-
if (!types.includes(
|
|
8
|
+
if (!types.includes(monomerType))
|
|
35
9
|
throw '';
|
|
36
10
|
//return capTheMonomer(this.monomerLib!.get(type, name));
|
|
37
|
-
return this.monomerLib.get(
|
|
11
|
+
return this.monomerLib.get(monomerType, monomerName);
|
|
38
12
|
}
|
|
39
13
|
}
|
|
40
|
-
//# sourceMappingURL=data:application/json;base64,
|
|
14
|
+
//# sourceMappingURL=data:application/json;base64,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
|