@datagrok-libraries/bio 5.47.0 → 5.47.1

package/CHANGELOG.md

@@ -1,5 +1,9 @@
 # bio changelog
 
+## 5.47.1 (2024-12-30)
+
+Moved bio substructure filter types from Bio package to bio library
+
 ## 5.46.2 (2024-12-23)
 
 Add healthCheck method to the IAutoDockService interface

package/package.json

@@ -8,7 +8,7 @@
     "access": "public"
   },
   "friendlyName": "Datagrok bio library",
-  "version": "5.47.0",
+  "version": "5.47.1",
   "description": "Bio utilities, types supporting Macromolecule, Molecule3D data",
   "dependencies": {
     "@datagrok-libraries/chem-meta": "^1.2.7",

package/src/substructure-filter/bio-substructure-filter-types.d.ts

@@ -0,0 +1,47 @@
+import * as DG from 'datagrok-api/dg';
+import { Observable, Subject } from 'rxjs';
+export interface IFilterProps {
+}
+/** Fasta and Helm */
+export declare class BioFilterProps implements IFilterProps {
+    readonly substructure: string;
+    /** Pass false from an inheritors constructor, at the end set true. */ protected readOnly: boolean;
+    protected logger?: DG.PackageLogger | undefined;
+    constructor(substructure: string, 
+    /** Pass false from an inheritors constructor, at the end set true. */ readOnly?: boolean, logger?: DG.PackageLogger | undefined);
+}
+export interface IBioFilter {
+    get type(): string;
+    get props(): IFilterProps;
+    set props(value: IFilterProps);
+    applyProps(props: IFilterProps): void;
+    saveProps(): IFilterProps;
+    get onChanged(): Observable<void>;
+    get filterPanel(): HTMLElement;
+    get filterSummary(): string;
+    get isFiltering(): boolean;
+    attach(): Promise<void>;
+    detach(): Promise<void>;
+    resetFilter(): void;
+    substructureSearch(col: DG.Column): Promise<DG.BitSet | null>;
+}
+/** Encapsulates input controls handling */
+export declare abstract class BioFilterBase<TProps extends BioFilterProps> implements IBioFilter {
+    abstract get filterPanel(): HTMLElement;
+    abstract get emptyProps(): TProps;
+    onChanged: Subject<void>;
+    private _props;
+    protected _propsChanging: boolean;
+    abstract get type(): string;
+    get props(): TProps;
+    set props(value: TProps);
+    saveProps(): IFilterProps;
+    abstract applyProps(): void;
+    abstract attach(): Promise<void>;
+    detach(): Promise<void>;
+    get filterSummary(): string;
+    get isFiltering(): boolean;
+    abstract substructureSearch(_column: DG.Column): Promise<DG.BitSet | null>;
+    resetFilter(): void;
+}
+//# sourceMappingURL=bio-substructure-filter-types.d.ts.map

package/src/substructure-filter/bio-substructure-filter-types.d.ts.map

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package/src/substructure-filter/bio-substructure-filter-types.js

@@ -0,0 +1,64 @@
+import { Subject } from 'rxjs';
+/** Fasta and Helm */
+export class BioFilterProps {
+    constructor(substructure, 
+    /** Pass false from an inheritors constructor, at the end set true. */ readOnly = true, logger) {
+        this.substructure = substructure;
+        this.readOnly = readOnly;
+        this.logger = logger;
+        return new Proxy(this, {
+            set: (target, key, value) => {
+                this.logger?.debug(`BioFilterProps.set ${key.toString()}( '${value}' )`);
+                if (this.readOnly)
+                    throw new Error('Properties are immutable.');
+                target[key] = value;
+                return true;
+            }
+        });
+    }
+}
+/** Encapsulates input controls handling */
+export class BioFilterBase {
+    constructor() {
+        this.onChanged = new Subject();
+        this._props = null;
+        this._propsChanging = false;
+    }
+    get props() {
+        if (!this._props)
+            this._props = this.emptyProps;
+        return this._props;
+    }
+    ;
+    set props(value) {
+        this._propsChanging = true;
+        try {
+            this._props = value;
+            this.applyProps();
+            this.onChanged.next();
+        }
+        finally {
+            this._propsChanging = false;
+        }
+    }
+    ;
+    saveProps() {
+        const propsObj = {};
+        for (const [key, value] of Object.entries(this.props)) {
+            if (key !== '_onChanged' && key !== 'logger') {
+                // @ts-ignore
+                propsObj[key] = this.props[key];
+            }
+        }
+        return propsObj;
+    }
+    async detach() { }
+    get filterSummary() { return this.props.substructure; }
+    ;
+    get isFiltering() { return this.props.substructure !== ''; }
+    resetFilter() {
+        this.props = this.emptyProps;
+        this.onChanged.next();
+    }
+}
+//# sourceMappingURL=bio-substructure-filter-types.js.map

package/src/substructure-filter/bio-substructure-filter-types.js.map

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