@datagrok-libraries/bio 5.45.2 → 5.45.4

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Files changed (31) hide show
  1. package/CHANGELOG.md +14 -0
  2. package/package.json +1 -1
  3. package/src/helm/utils.d.ts +2 -0
  4. package/src/helm/utils.d.ts.map +1 -0
  5. package/src/helm/utils.js +6 -0
  6. package/src/helm/utils.js.map +1 -0
  7. package/src/types/index.d.ts +1 -1
  8. package/src/types/index.d.ts.map +1 -1
  9. package/src/utils/cell-renderer-async-base.d.ts +2 -1
  10. package/src/utils/cell-renderer-async-base.d.ts.map +1 -1
  11. package/src/utils/cell-renderer-async-base.js +5 -3
  12. package/src/utils/cell-renderer-async-base.js.map +1 -1
  13. package/src/utils/cell-renderer-back-base.d.ts +1 -1
  14. package/src/utils/cell-renderer-back-base.d.ts.map +1 -1
  15. package/src/utils/cell-renderer-back-base.js.map +1 -1
  16. package/src/utils/cell-renderer-monomer-placer.d.ts +1 -0
  17. package/src/utils/cell-renderer-monomer-placer.d.ts.map +1 -1
  18. package/src/utils/cell-renderer-monomer-placer.js +14 -11
  19. package/src/utils/cell-renderer-monomer-placer.js.map +1 -1
  20. package/src/utils/macromolecule/seq-handler.d.ts +8 -1
  21. package/src/utils/macromolecule/seq-handler.d.ts.map +1 -1
  22. package/src/utils/macromolecule/seq-handler.js +20 -0
  23. package/src/utils/macromolecule/seq-handler.js.map +1 -1
  24. package/src/utils/macromolecule/types.d.ts +1 -1
  25. package/src/utils/macromolecule/types.d.ts.map +1 -1
  26. package/src/utils/macromolecule/utils.d.ts.map +1 -1
  27. package/src/utils/macromolecule/utils.js +2 -7
  28. package/src/utils/macromolecule/utils.js.map +1 -1
  29. package/src/viewers/helm-service.d.ts +1 -0
  30. package/src/viewers/helm-service.d.ts.map +1 -1
  31. package/src/viewers/helm-service.js.map +1 -1
package/CHANGELOG.md CHANGED
@@ -1,5 +1,19 @@
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  # bio changelog
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+ ## 5.45.4 (2024-10-22)
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+
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+ ### Bug fixes
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+
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+ * Fix ISeqHandler getValue of type MacromoleculeValueBase
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+ * Fix CellRendererAsyncBase for LRU imageCache, cacheEnabled
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+
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+ ## 5.45.3 (2024-10-16)
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+
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+ ### Bug fixes
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+
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+ * Fix splitterWithSeparator
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+ * Fix MonomerPlacer onMouseMove handling
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+
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  ## 5.45.2 (2024-10-11)
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  ### Bug fixes
package/package.json CHANGED
@@ -8,7 +8,7 @@
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  "access": "public"
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  },
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  "friendlyName": "Datagrok bio library",
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- "version": "5.45.2",
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+ "version": "5.45.4",
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  "description": "Bio utilities, types supporting Macromolecule, Molecule3D data",
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  "dependencies": {
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  "@datagrok-libraries/chem-meta": "^1.2.7",
package/src/helm/utils.d.ts ADDED
@@ -0,0 +1,2 @@
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+ export declare function cleanupHelmSymbol(symbol: string): string;
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+ //# sourceMappingURL=utils.d.ts.map
package/src/helm/utils.d.ts.map ADDED
@@ -0,0 +1 @@
1
+ {"version":3,"file":"utils.d.ts","sourceRoot":"","sources":["utils.ts"],"names":[],"mappings":"AAIA,wBAAgB,iBAAiB,CAAC,MAAM,EAAE,MAAM,GAAG,MAAM,CAIxD"}
package/src/helm/utils.js ADDED
@@ -0,0 +1,6 @@
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+ export function cleanupHelmSymbol(symbol) {
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+ if (symbol.startsWith('[') && symbol.endsWith(']'))
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+ return symbol.slice(1, -1);
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+ return symbol;
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+ }
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+ //# sourceMappingURL=utils.js.map
package/src/helm/utils.js.map ADDED
@@ -0,0 +1 @@
1
+ {"version":3,"file":"utils.js","sourceRoot":"","sources":["utils.ts"],"names":[],"mappings":"AAIA,MAAM,UAAU,iBAAiB,CAAC,MAAc;IAC9C,IAAI,MAAM,CAAC,UAAU,CAAC,GAAG,CAAC,IAAI,MAAM,CAAC,QAAQ,CAAC,GAAG,CAAC;QAChD,OAAO,MAAM,CAAC,KAAK,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC;IAC7B,OAAO,MAAM,CAAC;AAChB,CAAC"}
package/src/types/index.d.ts CHANGED
@@ -25,7 +25,7 @@ export type Monomer = {
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  [OPT.META]?: {
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  [property: string]: any;
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  };
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- lib?: IMonomerLib;
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+ lib?: IMonomerLibBase;
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  wem?: IWebEditorMonomer;
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  };
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  export interface IMonomerLinkData {
package/src/types/index.d.ts.map CHANGED
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1
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package/src/utils/cell-renderer-async-base.d.ts CHANGED
@@ -1,5 +1,6 @@
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  import * as DG from 'datagrok-api/dg';
2
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  import { Unsubscribable } from 'rxjs';
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+ import { LRUCache } from 'lru-cache';
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  import { ILogger } from './logger';
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  import { CellRendererBackBase } from './cell-renderer-back-base';
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  export declare class PropsBase {
@@ -62,7 +63,7 @@ export declare abstract class RenderServiceBase<TProps extends PropsBase, TAux>
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  export declare abstract class CellRendererBackAsyncBase<TProps extends PropsBase, TAux> extends CellRendererBackBase<string> {
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  readonly cacheEnabled: boolean;
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  protected readonly taskQueueMap: Map<number, RenderTask<TProps, TAux>>;
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- protected imageCache: Map<number, ImageData>;
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+ protected imageCache: LRUCache<number, ImageData, unknown>;
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  /** Consumer identifier of the render service */
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  protected consumerId: number | null;
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  protected constructor(gridCol: DG.GridColumn | null, tableCol: DG.Column, logger: ILogger, cacheEnabled?: boolean);
package/src/utils/cell-renderer-async-base.d.ts.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"cell-renderer-async-base.d.ts","sourceRoot":"","sources":["cell-renderer-async-base.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAItC,OAAO,EAAsB,cAAc,EAAC,MAAM,MAAM,CAAC;AAIzD,OAAO,EAAC,OAAO,EAAC,MAAM,UAAU,CAAC;AAEjC,OAAO,EAAC,oBAAoB,EAAC,MAAM,2BAA2B,CAAC;AAE/D,qBAAa,SAAS;aAEF,SAAS,EAAE,MAAM;aACjB,KAAK,EAAE,MAAM;aACb,MAAM,EAAE,MAAM;gBAFd,SAAS,EAAE,MAAM,EACjB,KAAK,EAAE,MAAM,EACb,MAAM,EAAE,MAAM;CAEjC;AAED,qBAAa,UAAU,CAAC,MAAM,SAAS,SAAS,EAAE,IAAI;aAElC,IAAI,EAAE,MAAM;aACZ,KAAK,EAAE,MAAM;aACb,aAAa,EAAE,CAAC,MAAM,EAAE,iBAAiB,EAAE,GAAG,EAAE,IAAI,KAAK,IAAI;aAC7D,UAAU,CAAC,GAAE,MAAM,OAAO;gBAH1B,IAAI,EAAE,MAAM,EACZ,KAAK,EAAE,MAAM,EACb,aAAa,EAAE,CAAC,MAAM,EAAE,iBAAiB,EAAE,GAAG,EAAE,IAAI,KAAK,IAAI,EAC7D,UAAU,CAAC,GAAE,MAAM,OAAO,aAAA;CAE7C;AAED,KAAK,eAAe,CAAC,MAAM,SAAS,SAAS,EAAE,IAAI,IAAI;IACrD,UAAU,EAAE,MAAM,CAAC;IACnB,GAAG,CAAC,EAAE,MAAM,GAAG,CAAC;IAChB,IAAI,EAAE,UAAU,CAAC,MAAM,EAAE,IAAI,CAAC,CAAC;IAC/B,QAAQ,EAAE,MAAM,CAAC;IACjB,EAAE,EAAE,MAAM,CAAA;CACX,CAAA;AAED,8BAAsB,iBAAiB,CAAC,MAAM,SAAS,SAAS,EAAE,IAAI;IAWlE,SAAS,CAAC,QAAQ,CAAC,MAAM,EAAE,OAAO;IAClC,SAAS,CAAC,QAAQ,CAAC,UAAU,EAAE,MAAM;IACrC,SAAS,CAAC,WAAW,EAAE,MAAM;IAC7B,SAAS,CAAC,QAAQ,CAAC,UAAU,EAAE,MAAM;IACrC,SAAS,CAAC,QAAQ,CAAC,UAAU,EAAE,MAAM;IAdvC,OAAO,CAAC,eAAe,CAAa;IACpC,SAAS,CAAC,QAAQ,CAAC,MAAM,EAAE,eAAe,CAAC,MAAM,EAAE,IAAI,CAAC,EAAE,CAAC;IAC3D,SAAS,CAAC,QAAQ,CAAC,UAAU,EAAE;QAC7B,CAAC,GAAG,EAAE,MAAM,GAAG,GAAG,UAAU,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;KAC3C,CAAC;IACF,6FAA6F;IAC7F,OAAO,CAAC,KAAK,CAAkB;IAC/B,OAAO,CAAC,cAAc,CAAuB;gBAGxB,MAAM,EAAE,OAAO,EACf,UAAU,GAAE,MAAU,EAC/B,WAAW,GAAE,MAAU,EACd,UAAU,GAAE,MAAU,EACtB,UAAU,GAAE,MAAa;IAQ9C,OAAO,CAAC,MAAM,CAAC,aAAa,CAAc;IAC1C,OAAO,CAAC,QAAQ,CAAC,QAAQ,CAA6C;IAEtE,SAAS,CAAC,KAAK,IAAI,MAAM;IAIzB,IAAW,UAAU,IAAI,MAAM,CAA6B;IAE5D,mDAAmD;IAC7C,KAAK,IAAI,OAAO,CAAC,IAAI,CAAC;IAI5B;;;;;OAKG;IACH,MAAM,CAAC,UAAU,EAAE,MAAM,GAAG,IAAI,EAAE,IAAI,EAAE,UAAU,CAAC,MAAM,EAAE,IAAI,CAAC,EAAE,GAAG,CAAC,EAAE,MAAM,GAAG,EAAE,QAAQ,GAAE,MAAU,GAAG,MAAM;IA8BhH,MAAM,CAAC,UAAU,EAAE,MAAM,GAAG,OAAO;IAInC,SAAS,CAAC,OAAO,IAAI,eAAe,CAAC,MAAM,EAAE,IAAI,CAAC,GAAG,SAAS;IA0B9D,OAAO,CAAC,aAAa;IAoFrB,oCAAoC;IACpC,OAAO,CAAC,WAAW;IAqBnB,OAAO,CAAC,YAAY;IAgBpB,SAAS,CAAC,QAAQ,CAAC,aAAa,CAC9B,GAAG,EAAE,MAAM,GAAG,GAAG,SAAS,EAAE,IAAI,EAAE,UAAU,CAAC,MAAM,EAAE,IAAI,CAAC,EAAE,aAAa,EAAE,CAAC,GAAG,EAAE,IAAI,KAAK,IAAI,GAC7F,OAAO,CAAC,CAAC,cAAc,EAAE,MAAM,EAAE,MAAM,IAAI,CAAC,CAAC;IAEhD,SAAS,CAAC,QAAQ,CAAC,UAAU,CAC3B,GAAG,EAAE,MAAM,GAAG,GAAG,SAAS,EAAE,IAAI,EAAE,UAAU,CAAC,MAAM,EAAE,IAAI,CAAC,EAAE,eAAe,EAAE,MAAM,EAAE,GAAG,EAAE,IAAI,GAC7F,OAAO;CACX;AAED,8BAAsB,yBAAyB,CAAC,MAAM,SAAS,SAAS,EAAE,IAAI,CAC5E,SAAQ,oBAAoB,CAAC,MAAM,CAAC;aAWlB,YAAY,EAAE,OAAO;IAVvC,SAAS,CAAC,QAAQ,CAAC,YAAY,wCAA6C;IAC5E,SAAS,CAAC,UAAU,yBAAgC;IAEpD,gDAAgD;IAChD,SAAS,CAAC,UAAU,EAAE,MAAM,GAAG,IAAI,CAAQ;IAE3C,SAAS,aACP,OAAO,EAAE,EAAE,CAAC,UAAU,GAAG,IAAI,EAC7B,QAAQ,EAAE,EAAE,CAAC,MAAM,EACnB,MAAM,EAAE,OAAO,EACC,YAAY,GAAE,OAAc;cAK3B,KAAK,IAAI,IAAI;IAShC,SAAS,CAAC,QAAQ,CAAC,gBAAgB,IAAI,iBAAiB,CAAC,MAAM,EAAE,IAAI,CAAC,GAAG,IAAI;IAE7E,SAAS,CAAC,QAAQ,CAAC,kBAAkB,CACnC,QAAQ,EAAE,EAAE,CAAC,QAAQ,EAAE,SAAS,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,GACtE,MAAM;IAEF,MAAM,CAAC,CAAC,EAAE,wBAAwB,EAAE,CAAC,EAAE,MAAM,EAAE,CAAC,EAAE,MAAM,EAAE,CAAC,EAAE,MAAM,EAAE,CAAC,EAAE,MAAM,EACnF,QAAQ,EAAE,EAAE,CAAC,QAAQ,EAAE,SAAS,EAAE,EAAE,CAAC,aAAa,GACjD,IAAI;IAqGP;;;;;;OAMG;IACH,SAAS,CAAC,mBAAmB,CAC3B,IAAI,EAAE,wBAAwB,EAAE,EAAE,EAAE,EAAE,CAAC,IAAI,EAAE,KAAK,EAAE,EAAE,CAAC,QAAQ,EAAE,aAAa,EAAE,SAAS,GACxF,OAAO;IA4BV,SAAS,CAAC,QAAQ,CAAC,QAAQ,CAAC,QAAQ,EAAE,EAAE,CAAC,QAAQ,EAAE,GAAG,EAAE,IAAI,GAAG,IAAI;IAEnE;;;;;OAKG;IACH,SAAS,CAAC,YAAY,CACpB,IAAI,EAAE,wBAAwB,EAAE,EAAE,EAAE,EAAE,CAAC,IAAI,EAAE,KAAK,EAAE,EAAE,CAAC,QAAQ,EAAE,aAAa,EAAE,SAAS,GACxF,IAAI;CAyCR"}
1
+ {"version":3,"file":"cell-renderer-async-base.d.ts","sourceRoot":"","sources":["cell-renderer-async-base.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAItC,OAAO,EAAsB,cAAc,EAAC,MAAM,MAAM,CAAC;AACzD,OAAO,EAAC,QAAQ,EAAC,MAAM,WAAW,CAAC;AAInC,OAAO,EAAC,OAAO,EAAC,MAAM,UAAU,CAAC;AAEjC,OAAO,EAAC,oBAAoB,EAAC,MAAM,2BAA2B,CAAC;AAE/D,qBAAa,SAAS;aAEF,SAAS,EAAE,MAAM;aACjB,KAAK,EAAE,MAAM;aACb,MAAM,EAAE,MAAM;gBAFd,SAAS,EAAE,MAAM,EACjB,KAAK,EAAE,MAAM,EACb,MAAM,EAAE,MAAM;CAEjC;AAED,qBAAa,UAAU,CAAC,MAAM,SAAS,SAAS,EAAE,IAAI;aAElC,IAAI,EAAE,MAAM;aACZ,KAAK,EAAE,MAAM;aACb,aAAa,EAAE,CAAC,MAAM,EAAE,iBAAiB,EAAE,GAAG,EAAE,IAAI,KAAK,IAAI;aAC7D,UAAU,CAAC,GAAE,MAAM,OAAO;gBAH1B,IAAI,EAAE,MAAM,EACZ,KAAK,EAAE,MAAM,EACb,aAAa,EAAE,CAAC,MAAM,EAAE,iBAAiB,EAAE,GAAG,EAAE,IAAI,KAAK,IAAI,EAC7D,UAAU,CAAC,GAAE,MAAM,OAAO,aAAA;CAE7C;AAED,KAAK,eAAe,CAAC,MAAM,SAAS,SAAS,EAAE,IAAI,IAAI;IACrD,UAAU,EAAE,MAAM,CAAC;IACnB,GAAG,CAAC,EAAE,MAAM,GAAG,CAAC;IAChB,IAAI,EAAE,UAAU,CAAC,MAAM,EAAE,IAAI,CAAC,CAAC;IAC/B,QAAQ,EAAE,MAAM,CAAC;IACjB,EAAE,EAAE,MAAM,CAAA;CACX,CAAA;AAED,8BAAsB,iBAAiB,CAAC,MAAM,SAAS,SAAS,EAAE,IAAI;IAWlE,SAAS,CAAC,QAAQ,CAAC,MAAM,EAAE,OAAO;IAClC,SAAS,CAAC,QAAQ,CAAC,UAAU,EAAE,MAAM;IACrC,SAAS,CAAC,WAAW,EAAE,MAAM;IAC7B,SAAS,CAAC,QAAQ,CAAC,UAAU,EAAE,MAAM;IACrC,SAAS,CAAC,QAAQ,CAAC,UAAU,EAAE,MAAM;IAdvC,OAAO,CAAC,eAAe,CAAa;IACpC,SAAS,CAAC,QAAQ,CAAC,MAAM,EAAE,eAAe,CAAC,MAAM,EAAE,IAAI,CAAC,EAAE,CAAC;IAC3D,SAAS,CAAC,QAAQ,CAAC,UAAU,EAAE;QAC7B,CAAC,GAAG,EAAE,MAAM,GAAG,GAAG,UAAU,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;KAC3C,CAAC;IACF,6FAA6F;IAC7F,OAAO,CAAC,KAAK,CAAkB;IAC/B,OAAO,CAAC,cAAc,CAAuB;gBAGxB,MAAM,EAAE,OAAO,EACf,UAAU,GAAE,MAAU,EAC/B,WAAW,GAAE,MAAU,EACd,UAAU,GAAE,MAAU,EACtB,UAAU,GAAE,MAAa;IAQ9C,OAAO,CAAC,MAAM,CAAC,aAAa,CAAc;IAC1C,OAAO,CAAC,QAAQ,CAAC,QAAQ,CAA6C;IAEtE,SAAS,CAAC,KAAK,IAAI,MAAM;IAIzB,IAAW,UAAU,IAAI,MAAM,CAA6B;IAE5D,mDAAmD;IAC7C,KAAK,IAAI,OAAO,CAAC,IAAI,CAAC;IAI5B;;;;;OAKG;IACH,MAAM,CAAC,UAAU,EAAE,MAAM,GAAG,IAAI,EAAE,IAAI,EAAE,UAAU,CAAC,MAAM,EAAE,IAAI,CAAC,EAAE,GAAG,CAAC,EAAE,MAAM,GAAG,EAAE,QAAQ,GAAE,MAAU,GAAG,MAAM;IA8BhH,MAAM,CAAC,UAAU,EAAE,MAAM,GAAG,OAAO;IAInC,SAAS,CAAC,OAAO,IAAI,eAAe,CAAC,MAAM,EAAE,IAAI,CAAC,GAAG,SAAS;IA0B9D,OAAO,CAAC,aAAa;IAoFrB,oCAAoC;IACpC,OAAO,CAAC,WAAW;IAqBnB,OAAO,CAAC,YAAY;IAgBpB,SAAS,CAAC,QAAQ,CAAC,aAAa,CAC9B,GAAG,EAAE,MAAM,GAAG,GAAG,SAAS,EAAE,IAAI,EAAE,UAAU,CAAC,MAAM,EAAE,IAAI,CAAC,EAAE,aAAa,EAAE,CAAC,GAAG,EAAE,IAAI,KAAK,IAAI,GAC7F,OAAO,CAAC,CAAC,cAAc,EAAE,MAAM,EAAE,MAAM,IAAI,CAAC,CAAC;IAEhD,SAAS,CAAC,QAAQ,CAAC,UAAU,CAC3B,GAAG,EAAE,MAAM,GAAG,GAAG,SAAS,EAAE,IAAI,EAAE,UAAU,CAAC,MAAM,EAAE,IAAI,CAAC,EAAE,eAAe,EAAE,MAAM,EAAE,GAAG,EAAE,IAAI,GAC7F,OAAO;CACX;AAED,8BAAsB,yBAAyB,CAAC,MAAM,SAAS,SAAS,EAAE,IAAI,CAC5E,SAAQ,oBAAoB,CAAC,MAAM,CAAC;aAWlB,YAAY,EAAE,OAAO;IAVvC,SAAS,CAAC,QAAQ,CAAC,YAAY,wCAA6C;IAC5E,SAAS,CAAC,UAAU,uCAA+C;IAEnE,gDAAgD;IAChD,SAAS,CAAC,UAAU,EAAE,MAAM,GAAG,IAAI,CAAQ;IAE3C,SAAS,aACP,OAAO,EAAE,EAAE,CAAC,UAAU,GAAG,IAAI,EAC7B,QAAQ,EAAE,EAAE,CAAC,MAAM,EACnB,MAAM,EAAE,OAAO,EACC,YAAY,GAAE,OAAc;cAK3B,KAAK,IAAI,IAAI;IAShC,SAAS,CAAC,QAAQ,CAAC,gBAAgB,IAAI,iBAAiB,CAAC,MAAM,EAAE,IAAI,CAAC,GAAG,IAAI;IAE7E,SAAS,CAAC,QAAQ,CAAC,kBAAkB,CACnC,QAAQ,EAAE,EAAE,CAAC,QAAQ,EAAE,SAAS,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,GACtE,MAAM;IAEF,MAAM,CAAC,CAAC,EAAE,wBAAwB,EAAE,CAAC,EAAE,MAAM,EAAE,CAAC,EAAE,MAAM,EAAE,CAAC,EAAE,MAAM,EAAE,CAAC,EAAE,MAAM,EACnF,QAAQ,EAAE,EAAE,CAAC,QAAQ,EAAE,SAAS,EAAE,EAAE,CAAC,aAAa,GACjD,IAAI;IAsGP;;;;;;OAMG;IACH,SAAS,CAAC,mBAAmB,CAC3B,IAAI,EAAE,wBAAwB,EAAE,EAAE,EAAE,EAAE,CAAC,IAAI,EAAE,KAAK,EAAE,EAAE,CAAC,QAAQ,EAAE,aAAa,EAAE,SAAS,GACxF,OAAO;IA4BV,SAAS,CAAC,QAAQ,CAAC,QAAQ,CAAC,QAAQ,EAAE,EAAE,CAAC,QAAQ,EAAE,GAAG,EAAE,IAAI,GAAG,IAAI;IAEnE;;;;;OAKG;IACH,SAAS,CAAC,YAAY,CACpB,IAAI,EAAE,wBAAwB,EAAE,EAAE,EAAE,EAAE,CAAC,IAAI,EAAE,KAAK,EAAE,EAAE,CAAC,QAAQ,EAAE,aAAa,EAAE,SAAS,GACxF,IAAI;CAyCR"}
package/src/utils/cell-renderer-async-base.js CHANGED
@@ -1,5 +1,6 @@
1
1
  import * as DG from 'datagrok-api/dg';
2
2
  import * as ui from 'datagrok-api/ui';
3
+ import { LRUCache } from 'lru-cache';
3
4
  import { errInfo } from './err-info';
4
5
  import { CellRendererBackBase } from './cell-renderer-back-base';
5
6
  export class PropsBase {
@@ -220,7 +221,7 @@ export class CellRendererBackAsyncBase extends CellRendererBackBase {
220
221
  super(gridCol, tableCol, logger);
221
222
  this.cacheEnabled = cacheEnabled;
222
223
  this.taskQueueMap = new Map;
223
- this.imageCache = new Map();
224
+ this.imageCache = new LRUCache({ max: 100 });
224
225
  /** Consumer identifier of the render service */
225
226
  this.consumerId = null;
226
227
  }
@@ -229,7 +230,7 @@ export class CellRendererBackAsyncBase extends CellRendererBackBase {
229
230
  // for (const cellImageData of this.imageCache.values())
230
231
  // cellImageData.remove();
231
232
  }
232
- this.imageCache = new Map();
233
+ this.imageCache.clear();
233
234
  super.reset();
234
235
  }
235
236
  render(g, x, y, w, h, gridCell, cellStyle) {
@@ -294,7 +295,8 @@ export class CellRendererBackAsyncBase extends CellRendererBackBase {
294
295
  }
295
296
  const cellCanvasData = cellCanvasCtx.getImageData(0, 0, cellCanvas.width, cellCanvas.height);
296
297
  this.renderOnGrid(g, new DG.Rect(x, y, w, h), gridCell, cellCanvasData);
297
- this.imageCache.set(rowIdx, cellCanvasData);
298
+ if (this.cacheEnabled)
299
+ this.imageCache.set(rowIdx, cellCanvasData);
298
300
  }
299
301
  finally {
300
302
  g.restore();
package/src/utils/cell-renderer-async-base.js.map CHANGED
@@ -1 +1 @@
1
- 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package/src/utils/cell-renderer-back-base.d.ts CHANGED
@@ -31,7 +31,7 @@ export declare abstract class CellRendererBackBase<TValue> extends CellRendererB
31
31
  /** Not null if rendered on a grid */
32
32
  gridCol: DG.GridColumn | null, tableCol: DG.Column<TValue>, logger: ILogger);
33
33
  private static viewerCounter;
34
- private readonly viewerId;
34
+ protected readonly viewerId: number;
35
35
  protected toLog(): string;
36
36
  protected destroy(): void;
37
37
  protected invalidateGrid(): void;
package/src/utils/cell-renderer-back-base.d.ts.map CHANGED
@@ -1 +1 @@
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package/src/utils/cell-renderer-back-base.js.map CHANGED
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package/src/utils/cell-renderer-monomer-placer.d.ts CHANGED
@@ -30,6 +30,7 @@ export declare class MonomerPlacer extends CellRendererBackBase<string> {
30
30
  /** View is required to subscribe and handle for data frame changes */
31
31
  constructor(gridCol: DG.GridColumn | null, tableCol: DG.Column<string>, logger: ILogger, monomerLengthLimit: number, propsProvider: () => MonomerPlacerProps);
32
32
  init(): Promise<void>;
33
+ toLog(): string;
33
34
  protected getMonomerLib(): IMonomerLibBase | null;
34
35
  protected reset(): void;
35
36
  protected invalidateGrid(): void;
package/src/utils/cell-renderer-monomer-placer.d.ts.map CHANGED
@@ -1 +1 @@
1
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1
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package/src/utils/cell-renderer-monomer-placer.js CHANGED
@@ -3,7 +3,7 @@ import * as DG from 'datagrok-api/dg';
3
3
  import wu from 'wu';
4
4
  import { getSeqHelper } from './seq-helper';
5
5
  import { ALPHABET, NOTATION, TAGS as bioTAGS } from './macromolecule';
6
- import { CellRendererBackBase, getGridCellColTemp } from './cell-renderer-back-base';
6
+ import { CellRendererBackBase } from './cell-renderer-back-base';
7
7
  import { getMonomerLibHelper } from '../monomer-works/monomer-utils';
8
8
  import { errInfo } from './err-info';
9
9
  import { DrawStyle, printLeftOrCentered, TAGS as mmcrTAGS } from './cell-renderer';
@@ -81,6 +81,9 @@ export class MonomerPlacer extends CellRendererBackBase {
81
81
  }));
82
82
  this.reset();
83
83
  }
84
+ toLog() {
85
+ return `MonomerPlacer<${this.viewerId}>`;
86
+ }
84
87
  getMonomerLib() {
85
88
  return this.tableCol.temp[".mm.cellRenderer.overriddenLibrary" /* MmcrTemps.overriddenLibrary */] ?? this.sysMonomerLib;
86
89
  }
@@ -180,8 +183,8 @@ export class MonomerPlacer extends CellRendererBackBase {
180
183
  for (let seqIdx = startIdx; seqIdx < endIdx; seqIdx++) {
181
184
  if (this._processedRows.get(seqIdx) && maxVisibleSeqLength <= this._processedMaxVisibleSeqLength)
182
185
  continue;
183
- const seqSS = this.seqHelper.getSeqHandler(this.tableCol)
184
- .getSplitted(seqIdx, maxVisibleSeqLength);
186
+ const sh = this.seqHelper.getSeqHandler(this.tableCol);
187
+ const seqSS = sh.getSplitted(seqIdx, maxVisibleSeqLength);
185
188
  const visibleSeqLength = Math.min(maxVisibleSeqLength, seqSS.length);
186
189
  if (visibleSeqLength > res.length)
187
190
  res.push(...new Array(visibleSeqLength - res.length).fill(minMonWidth));
@@ -226,6 +229,8 @@ export class MonomerPlacer extends CellRendererBackBase {
226
229
  const gridCol = this.gridCol;
227
230
  const tableCol = this.tableCol;
228
231
  const dpr = window.devicePixelRatio;
232
+ const logPrefix = `${this.toLog()}.render()`;
233
+ this.logger.debug(`${logPrefix}, start`);
229
234
  // Cell renderer settings
230
235
  let maxLengthOfMonomer = this.monomerLengthLimit;
231
236
  if (mmcrTAGS.maxMonomerLength in tableCol.tags) {
@@ -319,14 +324,11 @@ export class MonomerPlacer extends CellRendererBackBase {
319
324
  }
320
325
  }
321
326
  onMouseMove(gridCell, e) {
327
+ const logPrefix = `${this.toLog()}.onMouseMove()`;
322
328
  if (!this.seqHelper || gridCell.tableRowIndex == null)
323
329
  return;
324
330
  // if (gridCell.cell.column.getTag(bioTAGS.aligned) !== ALIGNMENT.SEQ_MSA)
325
331
  // return;
326
- const [_gridCol, tableCol, temp] = getGridCellColTemp(gridCell);
327
- const seqColTemp = temp.rendererBack;
328
- if (!seqColTemp)
329
- return; // Can do nothing without precalculated data
330
332
  const gridCellBounds = gridCell.bounds;
331
333
  // const value: any = gridCell.cell.value;
332
334
  //
@@ -336,8 +338,9 @@ export class MonomerPlacer extends CellRendererBackBase {
336
338
  // maxLengthWordsSum[posI] = maxLengthWordsSum[posI - 1] + maxLengthWords[posI];
337
339
  // const maxIndex = maxLengthWords.length;
338
340
  const argsX = e.offsetX - gridCell.gridColumn.left + (gridCell.gridColumn.left - gridCellBounds.x);
339
- const left = seqColTemp.getPosition(gridCell.tableRowIndex, argsX, gridCellBounds.width);
340
- const sh = this.seqHelper.getSeqHandler(tableCol);
341
+ const left = this.getPosition(gridCell.tableRowIndex, argsX, gridCellBounds.width);
342
+ this.logger.debug(`${logPrefix}, start, argsX: ${argsX}, left: ${left}`);
343
+ const sh = this.seqHelper.getSeqHandler(this.tableCol);
341
344
  const seqSS = sh.getSplitted(gridCell.tableRowIndex);
342
345
  if (left !== null && left < seqSS.length) {
343
346
  const alphabet = sh.alphabet ?? ALPHABET.UN;
@@ -347,10 +350,10 @@ export class MonomerPlacer extends CellRendererBackBase {
347
350
  symbol: seqSS.getCanonical(left),
348
351
  };
349
352
  const tooltipElements = [];
350
- let monomerDiv = seqColTemp._monomerStructureMap[seqMonomer.symbol];
353
+ let monomerDiv = this._monomerStructureMap[seqMonomer.symbol];
351
354
  if (!monomerDiv || true) {
352
355
  const monomerLib = this.getMonomerLib();
353
- monomerDiv = seqColTemp._monomerStructureMap[seqMonomer.symbol] = (() => {
356
+ monomerDiv = this._monomerStructureMap[seqMonomer.symbol] = (() => {
354
357
  return monomerLib ? monomerLib.getTooltip(seqMonomer.biotype, seqMonomer.symbol) :
355
358
  ui.divText('Monomer library is not available');
356
359
  })();
package/src/utils/cell-renderer-monomer-placer.js.map CHANGED
@@ -1 +1 @@
1
- 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package/src/utils/macromolecule/seq-handler.d.ts CHANGED
@@ -11,6 +11,13 @@ export declare const SeqTemps: {
11
11
  };
12
12
  export type ConvertFunc = (src: string) => string;
13
13
  export type JoinerFunc = (src: ISeqSplitted) => string;
14
+ export declare class MacromoleculeValueBase extends DG.SemanticValue<string> {
15
+ readonly helm: string;
16
+ private seqHandler;
17
+ private rowIdx?;
18
+ get value(): string;
19
+ constructor(helm: string, seqHandler: ISeqHandler, rowIdx?: number | undefined);
20
+ }
14
21
  export interface ISeqHandler {
15
22
  get column(): DG.Column<string>;
16
23
  get alphabet(): string;
@@ -30,7 +37,7 @@ export interface ISeqHandler {
30
37
  isHelm(): boolean;
31
38
  isSeparator(): boolean;
32
39
  getSplitted(rowIdx: number, limit?: number): ISeqSplitted;
33
- getHelm(rowIdx: number, options?: any): Promise<DG.SemanticValue<string>>;
40
+ getValue(rowIdx: number, options?: any): Promise<MacromoleculeValueBase>;
34
41
  getAlphabetSize(): number;
35
42
  getAlphabetIsMultichar(): boolean;
36
43
  getNewColumnFromList(name: string, seqList: string[]): DG.Column<string>;
package/src/utils/macromolecule/seq-handler.d.ts.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"seq-handler.d.ts","sourceRoot":"","sources":["seq-handler.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAEtC,OAAO,EAAC,wBAAwB,EAAC,MAAM,6DAA6D,CAAC;AAErG,OAAO,EAAC,YAAY,EAAE,WAAW,EAAC,MAAM,SAAS,CAAC;AAClD,OAAO,EAAC,QAAQ,EAAC,MAAM,UAAU,CAAC;AAClC,OAAO,EAAC,QAAQ,EAAC,MAAM,kBAAkB,CAAC;AAC1C,OAAO,EAAC,oBAAoB,EAAC,MAAM,4BAA4B,CAAC;AAEhE,eAAO,MAAM,QAAQ;IACnB,sDAAsD;;;CAGrD,CAAC;AACJ,MAAM,MAAM,WAAW,GAAG,CAAC,GAAG,EAAE,MAAM,KAAK,MAAM,CAAC;AAClD,MAAM,MAAM,UAAU,GAAG,CAAC,GAAG,EAAE,YAAY,KAAK,MAAM,CAAC;AAEvD,MAAM,WAAW,WAAW;IAC1B,IAAI,MAAM,IAAI,EAAE,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC;IAEhC,IAAI,QAAQ,IAAI,MAAM,CAAC;IACvB,IAAI,QAAQ,IAAI,QAAQ,CAAC;IACzB,IAAI,SAAS,IAAI,MAAM,GAAG,SAAS,CAAC;IAEpC,IAAI,OAAO,IAAI,MAAM,CAAC;IACtB,IAAI,KAAK,IAAI,MAAM,CAAC;IACpB,IAAI,cAAc,IAAI,QAAQ,CAAC;IAC/B,IAAI,SAAS,IAAI,MAAM,CAAC;IACxB,IAAI,MAAM,IAAI,MAAM,CAAC;IACrB,IAAI,kBAAkB,IAAI,MAAM,CAAC;IACjC,IAAI,KAAK,IAAI,WAAW,CAAC;IACzB,IAAI,MAAM,IAAI,UAAU,CAAC;IAEzB,IAAI,OAAO,IAAI,MAAM,EAAE,CAAC;IAExB,OAAO,IAAI,OAAO,CAAC;IACnB,KAAK,IAAI,OAAO,CAAC;IACjB,MAAM,IAAI,OAAO,CAAC;IAClB,WAAW,IAAI,OAAO,CAAC;IAGvB,WAAW,CAAC,MAAM,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,MAAM,GAAG,YAAY,CAAC;IAC1D,OAAO,CAAC,MAAM,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,GAAG,GAAG,OAAO,CAAC,EAAE,CAAC,aAAa,CAAC,MAAM,CAAC,CAAC,CAAC;IAE1E,eAAe,IAAI,MAAM,CAAC;IAC1B,sBAAsB,IAAI,OAAO,CAAC;IAClC,oBAAoB,CAAC,IAAI,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,EAAE,GAAG,EAAE,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC;IACzE,OAAO,CAAC,WAAW,EAAE,QAAQ,EAAE,YAAY,CAAC,EAAE,MAAM,GAAG,EAAE,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC;IACzE,2BAA2B,CAAC,MAAM,EAAE,MAAM,EAAE,WAAW,EAAE,MAAM,EAC7D,YAAY,CAAC,EAAE,MAAM,EAAE,cAAc,CAAC,EAAE,MAAM,GAAG,MAAM,CAAC;IAC1D,SAAS,CAAC,QAAQ,EAAE,MAAM,GAAG,IAAI,EAAE,MAAM,EAAE,MAAM,GAAG,IAAI,EAAE,IAAI,EAAE,MAAM,GAAG,EAAE,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC;IAC3F,SAAS,CAAC,IAAI,CAAC,EAAE;QAAE,QAAQ,EAAE,QAAQ,CAAC;QAAC,SAAS,CAAC,EAAE,MAAM,CAAA;KAAE,GAAG,UAAU,CAAC;IAEzE,uBAAuB,IAAI,wBAAwB,CAAC;IACpD,YAAY,CAAC,QAAQ,EAAE,QAAQ,EAAE,YAAY,CAAC,EAAE,MAAM,GAAG,WAAW,CAAC;IACrE,eAAe,CAAC,OAAO,EAAE,EAAE,CAAC,UAAU,GAAG,IAAI,EAAE,QAAQ,EAAE,EAAE,CAAC,MAAM,CAAC,MAAM,CAAC,GAAG,oBAAoB,CAAC,MAAM,CAAC,CAAC;CAC3G"}
1
+ {"version":3,"file":"seq-handler.d.ts","sourceRoot":"","sources":["seq-handler.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAEtC,OAAO,EAAC,wBAAwB,EAAC,MAAM,6DAA6D,CAAC;AAErG,OAAO,EAAC,YAAY,EAAE,WAAW,EAAC,MAAM,SAAS,CAAC;AAClD,OAAO,EAAC,QAAQ,EAAC,MAAM,UAAU,CAAC;AAClC,OAAO,EAAC,QAAQ,EAAC,MAAM,kBAAkB,CAAC;AAC1C,OAAO,EAAC,oBAAoB,EAAC,MAAM,4BAA4B,CAAC;AAEhE,eAAO,MAAM,QAAQ;IACnB,sDAAsD;;;CAGrD,CAAC;AACJ,MAAM,MAAM,WAAW,GAAG,CAAC,GAAG,EAAE,MAAM,KAAK,MAAM,CAAC;AAClD,MAAM,MAAM,UAAU,GAAG,CAAC,GAAG,EAAE,YAAY,KAAK,MAAM,CAAC;AAEvD,qBAAa,sBAAuB,SAAQ,EAAE,CAAC,aAAa,CAAC,MAAM,CAAC;aAKhD,IAAI,EAAE,MAAM;IAC5B,OAAO,CAAC,UAAU;IAClB,OAAO,CAAC,MAAM,CAAC;IALjB,IAAa,KAAK,IAAI,MAAM,CAAsB;gBAGhC,IAAI,EAAE,MAAM,EACpB,UAAU,EAAE,WAAW,EACvB,MAAM,CAAC,EAAE,MAAM,YAAA;CAY1B;AAED,MAAM,WAAW,WAAW;IAC1B,IAAI,MAAM,IAAI,EAAE,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC;IAEhC,IAAI,QAAQ,IAAI,MAAM,CAAC;IACvB,IAAI,QAAQ,IAAI,QAAQ,CAAC;IACzB,IAAI,SAAS,IAAI,MAAM,GAAG,SAAS,CAAC;IAEpC,IAAI,OAAO,IAAI,MAAM,CAAC;IACtB,IAAI,KAAK,IAAI,MAAM,CAAC;IACpB,IAAI,cAAc,IAAI,QAAQ,CAAC;IAC/B,IAAI,SAAS,IAAI,MAAM,CAAC;IACxB,IAAI,MAAM,IAAI,MAAM,CAAC;IACrB,IAAI,kBAAkB,IAAI,MAAM,CAAC;IACjC,IAAI,KAAK,IAAI,WAAW,CAAC;IACzB,IAAI,MAAM,IAAI,UAAU,CAAC;IAEzB,IAAI,OAAO,IAAI,MAAM,EAAE,CAAC;IAExB,OAAO,IAAI,OAAO,CAAC;IACnB,KAAK,IAAI,OAAO,CAAC;IACjB,MAAM,IAAI,OAAO,CAAC;IAClB,WAAW,IAAI,OAAO,CAAC;IAEvB,WAAW,CAAC,MAAM,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,MAAM,GAAG,YAAY,CAAC;IAC1D,QAAQ,CAAC,MAAM,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,GAAG,GAAG,OAAO,CAAC,sBAAsB,CAAC,CAAC;IAEzE,eAAe,IAAI,MAAM,CAAC;IAC1B,sBAAsB,IAAI,OAAO,CAAC;IAClC,oBAAoB,CAAC,IAAI,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,EAAE,GAAG,EAAE,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC;IACzE,OAAO,CAAC,WAAW,EAAE,QAAQ,EAAE,YAAY,CAAC,EAAE,MAAM,GAAG,EAAE,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC;IACzE,2BAA2B,CAAC,MAAM,EAAE,MAAM,EAAE,WAAW,EAAE,MAAM,EAC7D,YAAY,CAAC,EAAE,MAAM,EAAE,cAAc,CAAC,EAAE,MAAM,GAAG,MAAM,CAAC;IAC1D,SAAS,CAAC,QAAQ,EAAE,MAAM,GAAG,IAAI,EAAE,MAAM,EAAE,MAAM,GAAG,IAAI,EAAE,IAAI,EAAE,MAAM,GAAG,EAAE,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC;IAC3F,SAAS,CAAC,IAAI,CAAC,EAAE;QAAE,QAAQ,EAAE,QAAQ,CAAC;QAAC,SAAS,CAAC,EAAE,MAAM,CAAA;KAAE,GAAG,UAAU,CAAC;IAEzE,uBAAuB,IAAI,wBAAwB,CAAC;IACpD,YAAY,CAAC,QAAQ,EAAE,QAAQ,EAAE,YAAY,CAAC,EAAE,MAAM,GAAG,WAAW,CAAC;IACrE,eAAe,CAAC,OAAO,EAAE,EAAE,CAAC,UAAU,GAAG,IAAI,EAAE,QAAQ,EAAE,EAAE,CAAC,MAAM,CAAC,MAAM,CAAC,GAAG,oBAAoB,CAAC,MAAM,CAAC,CAAC;CAC3G"}
package/src/utils/macromolecule/seq-handler.js CHANGED
@@ -1,3 +1,5 @@
1
+ import * as DG from 'datagrok-api/dg';
2
+ import { NOTATION } from './consts';
1
3
  export const SeqTemps = new class {
2
4
  constructor() {
3
5
  /** Column's temp slot name for a SeqHandler object */
@@ -5,4 +7,22 @@ export const SeqTemps = new class {
5
7
  this.notationProvider = `seq-handler.notation-provider`;
6
8
  }
7
9
  }();
10
+ export class MacromoleculeValueBase extends DG.SemanticValue {
11
+ get value() { return this.helm; }
12
+ constructor(helm, seqHandler, rowIdx) {
13
+ let v;
14
+ if (rowIdx != null) {
15
+ const tableCell = seqHandler.column.dataFrame.cell(rowIdx, seqHandler.column.name);
16
+ v = DG.SemanticValue.fromTableCell(tableCell);
17
+ }
18
+ else {
19
+ v = DG.SemanticValue.fromValueType(helm, DG.SEMTYPE.MACROMOLECULE, NOTATION.HELM);
20
+ }
21
+ // @ts-ignore
22
+ super(v.dart);
23
+ this.helm = helm;
24
+ this.seqHandler = seqHandler;
25
+ this.rowIdx = rowIdx;
26
+ }
27
+ }
8
28
  //# sourceMappingURL=seq-handler.js.map
package/src/utils/macromolecule/seq-handler.js.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"seq-handler.js","sourceRoot":"","sources":["seq-handler.ts"],"names":[],"mappings":"AAWA,MAAM,CAAC,MAAM,QAAQ,GAAG,IAAI;IAAA;QAC1B,sDAAsD;QACtD,eAAU,GAAG,aAAa,CAAC;QAC3B,qBAAgB,GAAG,+BAA+B,CAAC;IACrD,CAAC;CAAA,EAAE,CAAC"}
1
+ {"version":3,"file":"seq-handler.js","sourceRoot":"","sources":["seq-handler.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAKtC,OAAO,EAAC,QAAQ,EAAC,MAAM,UAAU,CAAC;AAIlC,MAAM,CAAC,MAAM,QAAQ,GAAG,IAAI;IAAA;QAC1B,sDAAsD;QACtD,eAAU,GAAG,aAAa,CAAC;QAC3B,qBAAgB,GAAG,+BAA+B,CAAC;IACrD,CAAC;CAAA,EAAE,CAAC;AAIJ,MAAM,OAAO,sBAAuB,SAAQ,EAAE,CAAC,aAAqB;IAElE,IAAa,KAAK,KAAa,OAAO,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC;IAElD,YACkB,IAAY,EACpB,UAAuB,EACvB,MAAe;QAEvB,IAAI,CAA2B,CAAC;QAChC,IAAI,MAAM,IAAI,IAAI,EAAE,CAAC;YACnB,MAAM,SAAS,GAAG,UAAU,CAAC,MAAM,CAAC,SAAS,CAAC,IAAI,CAAC,MAAM,EAAE,UAAU,CAAC,MAAM,CAAC,IAAI,CAAC,CAAC;YACnF,CAAC,GAAG,EAAE,CAAC,aAAa,CAAC,aAAa,CAAC,SAAS,CAAC,CAAC;QAChD,CAAC;aAAM,CAAC;YACN,CAAC,GAAG,EAAE,CAAC,aAAa,CAAC,aAAa,CAAC,IAAI,EAAE,EAAE,CAAC,OAAO,CAAC,aAAa,EAAE,QAAQ,CAAC,IAAI,CAAC,CAAC;QACpF,CAAC;QACD,aAAa;QACb,KAAK,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC;QAZE,SAAI,GAAJ,IAAI,CAAQ;QACpB,eAAU,GAAV,UAAU,CAAa;QACvB,WAAM,GAAN,MAAM,CAAS;IAWzB,CAAC;CACF"}
package/src/utils/macromolecule/types.d.ts CHANGED
@@ -12,7 +12,7 @@ export interface ISeqSplitted {
12
12
  export interface INotationProvider {
13
13
  get splitter(): SplitterFunc;
14
14
  /** Any Macromolecule can be presented as Helm notation */
15
- getHelm(seq: string, options: any): Promise<DG.SemanticValue<string>>;
15
+ getHelm(seq: string, options: any): Promise<string>;
16
16
  createCellRendererBack(gridCol: DG.GridColumn | null, tableCol: DG.Column<string>): CellRendererBackBase<string>;
17
17
  }
18
18
  export type SeqColStats = {
package/src/utils/macromolecule/types.d.ts.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"types.d.ts","sourceRoot":"","sources":["types.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAEtC,OAAO,EAAC,oBAAoB,EAAC,MAAM,4BAA4B,CAAC;AAEhE,MAAM,MAAM,eAAe,GAAG,SAAS,CAAC,MAAM,CAAC,GAAG,QAAQ,CAAC,MAAM,CAAC,CAAC;AAEnE,MAAM,WAAW,YAAY;IAC3B,KAAK,CAAC,MAAM,EAAE,MAAM,GAAG,OAAO,CAAC;IAE/B,MAAM;IACN,YAAY,CAAC,MAAM,EAAE,MAAM,GAAG,MAAM,CAAC;IAErC,uEAAuE;IACvE,WAAW,CAAC,MAAM,EAAE,MAAM,GAAG,MAAM,CAAC;IAEpC,MAAM,EAAE,MAAM,CAAC;CAChB;AAED,MAAM,WAAW,iBAAiB;IAChC,IAAI,QAAQ,IAAI,YAAY,CAAC;IAE7B,0DAA0D;IAC1D,OAAO,CAAC,GAAG,EAAE,MAAM,EAAE,OAAO,EAAE,GAAG,GAAG,OAAO,CAAC,EAAE,CAAC,aAAa,CAAC,MAAM,CAAC,CAAC,CAAC;IAEtE,sBAAsB,CAAC,OAAO,EAAE,EAAE,CAAC,UAAU,GAAG,IAAI,EAAE,QAAQ,EAAE,EAAE,CAAC,MAAM,CAAC,MAAM,CAAC,GAAG,oBAAoB,CAAC,MAAM,CAAC,CAAC;CAClH;AAED,MAAM,MAAM,WAAW,GAAG;IAAE,IAAI,EAAE,YAAY,CAAC;IAAC,UAAU,EAAE,OAAO,CAAA;CAAE,CAAA;AACrE,MAAM,MAAM,YAAY,GAAG,CAAC,GAAG,EAAE,MAAM,KAAK,YAAY,CAAC;AACzD,MAAM,MAAM,YAAY,GAAG;IAAE,CAAC,CAAC,EAAE,MAAM,GAAG,MAAM,CAAA;CAAE,CAAC;AAEnD,8BAA8B;AAC9B,qBAAa,aAAa;IACxB,IAAI,EAAE,MAAM,CAAC;IACb,QAAQ,EAAE,GAAG,CAAC,MAAM,CAAC,CAAC;IACtB,MAAM,EAAE,MAAM,CAAC;gBAEH,IAAI,EAAE,MAAM,EAAE,QAAQ,EAAE,GAAG,CAAC,MAAM,CAAC,EAAE,MAAM,EAAE,MAAM;CAKhE;AAED,yCAAyC;AACzC,qBAAa,gBAAiB,SAAQ,aAAa;IACjD,IAAI,EAAE,YAAY,CAAC;IACnB,4BAA4B;IAC5B,UAAU,EAAE,MAAM,CAAC;gBAEP,SAAS,EAAE,aAAa,EAAE,IAAI,EAAE,YAAY,EAAE,UAAU,EAAE,MAAM;CAK7E"}
1
+ {"version":3,"file":"types.d.ts","sourceRoot":"","sources":["types.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAEtC,OAAO,EAAC,oBAAoB,EAAC,MAAM,4BAA4B,CAAC;AAEhE,MAAM,MAAM,eAAe,GAAG,SAAS,CAAC,MAAM,CAAC,GAAG,QAAQ,CAAC,MAAM,CAAC,CAAC;AAEnE,MAAM,WAAW,YAAY;IAC3B,KAAK,CAAC,MAAM,EAAE,MAAM,GAAG,OAAO,CAAC;IAE/B,MAAM;IACN,YAAY,CAAC,MAAM,EAAE,MAAM,GAAG,MAAM,CAAC;IAErC,uEAAuE;IACvE,WAAW,CAAC,MAAM,EAAE,MAAM,GAAG,MAAM,CAAC;IAEpC,MAAM,EAAE,MAAM,CAAC;CAChB;AAED,MAAM,WAAW,iBAAiB;IAChC,IAAI,QAAQ,IAAI,YAAY,CAAC;IAE7B,0DAA0D;IAC1D,OAAO,CAAC,GAAG,EAAE,MAAM,EAAE,OAAO,EAAE,GAAG,GAAG,OAAO,CAAC,MAAM,CAAC,CAAC;IAEpD,sBAAsB,CAAC,OAAO,EAAE,EAAE,CAAC,UAAU,GAAG,IAAI,EAAE,QAAQ,EAAE,EAAE,CAAC,MAAM,CAAC,MAAM,CAAC,GAAG,oBAAoB,CAAC,MAAM,CAAC,CAAC;CAClH;AAED,MAAM,MAAM,WAAW,GAAG;IAAE,IAAI,EAAE,YAAY,CAAC;IAAC,UAAU,EAAE,OAAO,CAAA;CAAE,CAAA;AACrE,MAAM,MAAM,YAAY,GAAG,CAAC,GAAG,EAAE,MAAM,KAAK,YAAY,CAAC;AACzD,MAAM,MAAM,YAAY,GAAG;IAAE,CAAC,CAAC,EAAE,MAAM,GAAG,MAAM,CAAA;CAAE,CAAC;AAEnD,8BAA8B;AAC9B,qBAAa,aAAa;IACxB,IAAI,EAAE,MAAM,CAAC;IACb,QAAQ,EAAE,GAAG,CAAC,MAAM,CAAC,CAAC;IACtB,MAAM,EAAE,MAAM,CAAC;gBAEH,IAAI,EAAE,MAAM,EAAE,QAAQ,EAAE,GAAG,CAAC,MAAM,CAAC,EAAE,MAAM,EAAE,MAAM;CAKhE;AAED,yCAAyC;AACzC,qBAAa,gBAAiB,SAAQ,aAAa;IACjD,IAAI,EAAE,YAAY,CAAC;IACnB,4BAA4B;IAC5B,UAAU,EAAE,MAAM,CAAC;gBAEP,SAAS,EAAE,aAAa,EAAE,IAAI,EAAE,YAAY,EAAE,UAAU,EAAE,MAAM;CAK7E"}
package/src/utils/macromolecule/utils.d.ts.map CHANGED
@@ -1 +1 @@
1
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package/src/utils/macromolecule/utils.js CHANGED
@@ -112,15 +112,10 @@ export function getSplitterWithSeparator(separator, limit = undefined) {
112
112
  return new StringListSeqSplitted([], GapOriginals[NOTATION.SEPARATOR]);
113
113
  else {
114
114
  let mmList;
115
- const mRe = new RegExp(String.raw `"-"|'-'|[^${separator}]+`, 'g'); // depends on separator args
115
+ const mRe = new RegExp(`(?<=^|\\${separator})("-"|'-'|[^\\${separator}]*)(?=\\${separator}|$)`, 'g'); // depends on separator args
116
116
  if (limit !== undefined) {
117
117
  mRe.lastIndex = 0;
118
- mmList = new Array(Math.ceil(limit));
119
- let mEa = null;
120
- let mI = 0;
121
- while ((mEa = mRe.exec(seq)) !== null && mI < limit)
122
- mmList[mI++] = mEa[0].replace(`"-"`, '').replace(`'-'`, '');
123
- mmList.splice(mI);
118
+ mmList = wu(seq.matchAll(mRe)).take(limit).map((ea) => ea[0]).toArray();
124
119
  }
125
120
  else
126
121
  mmList = seq.replaceAll('\"-\"', '').replaceAll('\'-\'', '').split(separator, limit);
package/src/utils/macromolecule/utils.js.map CHANGED
@@ -1 +1 @@
1
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package/src/viewers/helm-service.d.ts CHANGED
@@ -10,6 +10,7 @@ export declare class HelmProps extends PropsBase {
10
10
  export type HelmAux = {
11
11
  /** The molecule made of atoms (monomers) and bonds */ mol: Mol<HelmType>;
12
12
  /** SVG bounding box */ bBox: DG.Rect;
13
+ /** Draw bounding box */ dBox: DG.Rect;
13
14
  /** Cell box {0, 0, w, h} */ cBox: DG.Rect;
14
15
  };
15
16
  export declare abstract class HelmServiceBase extends RenderServiceBase<HelmProps, HelmAux> {
package/src/viewers/helm-service.d.ts.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"helm-service.d.ts","sourceRoot":"","sources":["helm-service.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAGtC,OAAO,EAAC,QAAQ,EAAE,GAAG,EAAC,MAAM,eAAe,CAAC;AAC5C,OAAO,EAAC,SAAS,EAAE,iBAAiB,EAAC,MAAM,mCAAmC,CAAC;AAC/E,OAAO,EAAC,eAAe,EAAC,MAAM,gBAAgB,CAAC;AAE/C,qBAAa,SAAU,SAAQ,SAAS;aAEpB,IAAI,EAAE,MAAM;aACZ,UAAU,EAAE,eAAe;gBAD3B,IAAI,EAAE,MAAM,EACZ,UAAU,EAAE,eAAe,EAC3C,SAAS,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM;CAInD;AAED,MAAM,MAAM,OAAO,GAAG;IACpB,sDAAsD,CAAC,GAAG,EAAE,GAAG,CAAC,QAAQ,CAAC,CAAC;IAC1E,uBAAuB,CAAC,IAAI,EAAE,EAAE,CAAC,IAAI,CAAC;IACtC,4BAA4B,CAAC,IAAI,EAAE,EAAE,CAAC,IAAI,CAAC;CAC5C,CAAA;AAED,8BAAsB,eAAgB,SAAQ,iBAAiB,CAAC,SAAS,EAAE,OAAO,CAAC;CAAG;AAEtF,wBAAsB,cAAc,IAAI,OAAO,CAAC,eAAe,CAAC,CAO/D"}
1
+ {"version":3,"file":"helm-service.d.ts","sourceRoot":"","sources":["helm-service.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAGtC,OAAO,EAAC,QAAQ,EAAE,GAAG,EAAC,MAAM,eAAe,CAAC;AAC5C,OAAO,EAAC,SAAS,EAAE,iBAAiB,EAAC,MAAM,mCAAmC,CAAC;AAC/E,OAAO,EAAC,eAAe,EAAC,MAAM,gBAAgB,CAAC;AAE/C,qBAAa,SAAU,SAAQ,SAAS;aAEpB,IAAI,EAAE,MAAM;aACZ,UAAU,EAAE,eAAe;gBAD3B,IAAI,EAAE,MAAM,EACZ,UAAU,EAAE,eAAe,EAC3C,SAAS,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM;CAInD;AAED,MAAM,MAAM,OAAO,GAAG;IACpB,sDAAsD,CAAC,GAAG,EAAE,GAAG,CAAC,QAAQ,CAAC,CAAC;IAC1E,uBAAuB,CAAC,IAAI,EAAE,EAAE,CAAC,IAAI,CAAC;IACtC,wBAAwB,CAAC,IAAI,EAAE,EAAE,CAAC,IAAI,CAAC;IACvC,4BAA4B,CAAC,IAAI,EAAE,EAAE,CAAC,IAAI,CAAC;CAC5C,CAAA;AAED,8BAAsB,eAAgB,SAAQ,iBAAiB,CAAC,SAAS,EAAE,OAAO,CAAC;CAAG;AAEtF,wBAAsB,cAAc,IAAI,OAAO,CAAC,eAAe,CAAC,CAO/D"}
package/src/viewers/helm-service.js.map CHANGED
@@ -1 +1 @@
1
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