@datagrok-libraries/bio 5.45.0 → 5.45.2

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Files changed (7) hide show
  1. package/CHANGELOG.md +27 -0
  2. package/package.json +12 -12
  3. package/src/utils/macromolecule/seq-handler.d.ts +1 -0
  4. package/src/utils/macromolecule/seq-handler.d.ts.map +1 -1
  5. package/src/utils/seq-helper.d.ts +4 -0
  6. package/src/utils/seq-helper.d.ts.map +1 -1
  7. package/src/utils/seq-helper.js.map +1 -1
package/CHANGELOG.md CHANGED
@@ -1,5 +1,32 @@
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  # bio changelog
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+ ## 5.45.2 (2024-10-11)
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+
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+ ### Bug fixes
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+
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+ * Fix moving setUnits methods to ISeqHelper
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+ * Fix dependencies version
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+
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+ ## 5.45.1 (2024-10-11)
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+
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+ ### Bug fixes
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+
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+ * Fix ISeqHelper adding getSeqMonomers
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+
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+ ## 5.45.0 (2024-10-10)
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+
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+ ### New features
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+
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+ * Add SeqHelper factory for SeqHandler moving to the Bio package
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+
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+ ### Bug fixes
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+
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+ * Fix toAtomicLevel for monomers without peptide bond (NH2)
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+ * Fix createHelmWebEditor drawOptions to options
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+ * Fix MonomerPlacer to get tooltip from overridden monomer lib
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+ * Fix Helm cell renderer props adding overridden monomer lib
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+ * Fix monomer lib loading timout on palettes
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+
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  ## 5.44.5 (2024-10-03)
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  ### Bug fixes
package/package.json CHANGED
@@ -8,7 +8,7 @@
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  "access": "public"
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  },
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  "friendlyName": "Datagrok bio library",
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- "version": "5.45.0",
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+ "version": "5.45.2",
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  "description": "Bio utilities, types supporting Macromolecule, Molecule3D data",
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  "dependencies": {
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  "@datagrok-libraries/chem-meta": "^1.2.7",
@@ -16,16 +16,16 @@
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  "@datagrok-libraries/ml": "^6.7.4",
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  "@datagrok-libraries/utils": "^4.3.6",
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  "@deck.gl/core": "8.8.12",
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- "cash-dom": "latest",
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+ "cash-dom": "^8.1.5",
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  "datagrok-api": "^1.21.1",
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- "dayjs": "latest",
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+ "dayjs": "^1.11.13",
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  "fastest-levenshtein": "^1.0.16",
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  "js-base64": "^3.7.5",
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  "lru-cache": "^10.4.3",
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  "mjolnir.js": "^2.7.0",
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  "rxjs": "^6.5.5",
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  "uuid": "^9.0.1",
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- "wu": "latest"
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+ "wu": "^2.1.0"
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  },
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  "devDependencies": {
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  "@datagrok-libraries/helm-web-editor": "^1.1.12",
@@ -33,15 +33,15 @@
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  "@types/signals": "1.0.1",
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  "@types/three": "^0.159.0",
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  "@types/uuid": "^9.0.1",
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- "@types/wu": "latest",
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- "@typescript-eslint/eslint-plugin": "latest",
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- "@typescript-eslint/parser": "latest",
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+ "@types/wu": "^2.1.44",
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+ "@typescript-eslint/eslint-plugin": "^8.8.1",
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+ "@typescript-eslint/parser": "^8.8.1",
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  "datagrok-tools": "latest",
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- "eslint": "latest",
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- "eslint-config-google": "latest",
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- "eslint-plugin-deprecation": "latest",
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- "ts-loader": "latest",
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- "typescript": "latest"
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+ "eslint": "8.57.1",
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+ "eslint-config-google": "^0.14.0",
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+ "eslint-plugin-deprecation": "^3.0.0",
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+ "ts-loader": "^9.5.1",
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+ "typescript": "^5.6.3"
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  },
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  "scripts": {
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  "link": "npm link",
package/src/utils/macromolecule/seq-handler.d.ts CHANGED
@@ -12,6 +12,7 @@ export declare const SeqTemps: {
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  export type ConvertFunc = (src: string) => string;
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  export type JoinerFunc = (src: ISeqSplitted) => string;
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  export interface ISeqHandler {
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+ get column(): DG.Column<string>;
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  get alphabet(): string;
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  get notation(): NOTATION;
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  get separator(): string | undefined;
package/src/utils/macromolecule/seq-handler.d.ts.map CHANGED
@@ -1 +1 @@
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package/src/utils/seq-helper.d.ts CHANGED
@@ -14,6 +14,10 @@ export interface ISeqHelper {
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  **/
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  helmToAtomicLevel(helmCol: DG.Column<string>, chiralityEngine?: boolean, highlight?: boolean, overrideMonomerLib?: IMonomerLibBase): Promise<ToAtomicLevelRes>;
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  getSeqHandler(seqCol: DG.Column<string>): ISeqHandler;
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+ getSeqMonomers(seqCol: DG.Column<string>): string[];
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+ setUnitsToFastaColumn(sh: ISeqHandler): void;
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+ setUnitsToSeparatorColumn(sh: ISeqHandler): void;
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+ setUnitsToHelmColumn(sh: ISeqHandler): void;
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  }
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  export declare function getSeqHelper(): Promise<ISeqHelper>;
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  //# sourceMappingURL=seq-helper.d.ts.map
package/src/utils/seq-helper.d.ts.map CHANGED
@@ -1 +1 @@
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package/src/utils/seq-helper.js.map CHANGED
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