@datagrok-libraries/bio 5.45.0 → 5.45.1

package/CHANGELOG.md

@@ -1,5 +1,25 @@
 # bio changelog
 
+## 5.45.1 (2024-10-11)
+
+### Bug fixes
+
+* Fix ISeqHelper adding getSeqMonomers
+
+## 5.45.0 (2024-10-10)
+
+### New features
+
+* Add SeqHelper factory for SeqHandler moving to the Bio package
+
+### Bug fixes
+
+* Fix toAtomicLevel for monomers without peptide bond (NH2)
+* Fix createHelmWebEditor drawOptions to options
+* Fix MonomerPlacer to get tooltip from overridden monomer lib
+* Fix Helm cell renderer props adding overridden monomer lib
+* Fix monomer lib loading timout on palettes
+
 ## 5.44.5 (2024-10-03)
 
 ### Bug fixes

package/package.json

@@ -8,7 +8,7 @@
     "access": "public"
   },
   "friendlyName": "Datagrok bio library",
-  "version": "5.45.0",
+  "version": "5.45.1",
   "description": "Bio utilities, types supporting Macromolecule, Molecule3D data",
   "dependencies": {
     "@datagrok-libraries/chem-meta": "^1.2.7",
@@ -16,16 +16,16 @@
     "@datagrok-libraries/ml": "^6.7.4",
     "@datagrok-libraries/utils": "^4.3.6",
     "@deck.gl/core": "8.8.12",
-    "cash-dom": "latest",
+    "cash-dom": "^8.1.5",
     "datagrok-api": "^1.21.1",
-    "dayjs": "latest",
+    "dayjs": "^1.11.13",
     "fastest-levenshtein": "^1.0.16",
     "js-base64": "^3.7.5",
     "lru-cache": "^10.4.3",
     "mjolnir.js": "^2.7.0",
     "rxjs": "^6.5.5",
     "uuid": "^9.0.1",
-    "wu": "latest"
+    "wu": "^2.1.0"
   },
   "devDependencies": {
     "@datagrok-libraries/helm-web-editor": "^1.1.12",
@@ -33,15 +33,15 @@
     "@types/signals": "1.0.1",
     "@types/three": "^0.159.0",
     "@types/uuid": "^9.0.1",
-    "@types/wu": "latest",
-    "@typescript-eslint/eslint-plugin": "latest",
-    "@typescript-eslint/parser": "latest",
+    "@types/wu": "^2.1.44",
+    "@typescript-eslint/eslint-plugin": "^8.8.1",
+    "@typescript-eslint/parser": "^8.8.1",
     "datagrok-tools": "latest",
-    "eslint": "latest",
-    "eslint-config-google": "latest",
-    "eslint-plugin-deprecation": "latest",
-    "ts-loader": "latest",
-    "typescript": "latest"
+    "eslint": "^9.12.0",
+    "eslint-config-google": "^0.14.0",
+    "eslint-plugin-deprecation": "^3.0.0",
+    "ts-loader": "^9.5.1",
+    "typescript": "^5.6.3"
   },
   "scripts": {
     "link": "npm link",

package/src/utils/seq-helper.d.ts

@@ -14,6 +14,7 @@ export interface ISeqHelper {
      **/
     helmToAtomicLevel(helmCol: DG.Column<string>, chiralityEngine?: boolean, highlight?: boolean, overrideMonomerLib?: IMonomerLibBase): Promise<ToAtomicLevelRes>;
     getSeqHandler(seqCol: DG.Column<string>): ISeqHandler;
+    getSeqMonomers(seqCol: DG.Column<string>): string[];
 }
 export declare function getSeqHelper(): Promise<ISeqHelper>;
 //# sourceMappingURL=seq-helper.d.ts.map

package/src/utils/seq-helper.d.ts.map

@@ -1 +1 @@
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package/src/utils/seq-helper.js.map

@@ -1 +1 @@
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+{"version":3,"file":"seq-helper.js","sourceRoot":"","sources":["seq-helper.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AA2BtC,MAAM,CAAC,KAAK,UAAU,YAAY;IAChC,MAAM,WAAW,GAAG,KAAK,CAAC;IAC1B,MAAM,QAAQ,GAAG,EAAE,CAAC,IAAI,CAAC,IAAI,CAAC,EAAC,OAAO,EAAE,WAAW,EAAE,IAAI,EAAE,cAAc,EAAC,CAAC,CAAC;IAC5E,IAAI,QAAQ,CAAC,MAAM,KAAK,CAAC;QACvB,MAAM,IAAI,KAAK,CAAC,YAAY,WAAW,oCAAoC,CAAC,CAAC;IAC/E,MAAM,GAAG,GAAG,CAAC,MAAM,QAAQ,CAAC,CAAC,CAAC,CAAC,OAAO,EAAE,CAAC,IAAI,EAAE,CAAC,CAAC,mBAAmB,EAAgB,CAAC;IACrF,OAAO,GAAG,CAAC;AACb,CAAC"}