@datagrok-libraries/bio 5.43.1 → 5.44.0

package/CHANGELOG.md

@@ -1,12 +1,29 @@
 # bio changelog
 
-## 5.43.1
+## 5.44.0 (2024-09-24)
+
+### New features
+
+* Add monomer hover link
+* Add getMolHighlight to build ISubstruct from monomer map
+* Add HelmHelper parse and removeGaps methods
+
+### Bug fixes
+
+* Fix toAtomicLevel for sequences with gaps
+* Fix toAtomicLevel for polymerType of sequence monomer
+* Fix ISeqMonomer for biotype and add position
+* Fix ISeqSplitted remove .canonicals and .originals
+* Fix IMonomerLib .getTooltip for biotype of HelmType
+* Fix toAtomicLevel linear for sequences with gaps
+
+## 5.43.1 (2024-09-22)
 
 Add monomer background coloring
 
-## 5.43.0
+## 5.43.0 (2024-09-18)
 
-Add coloring from monomer library to seaprator/fasta renderer
+Add coloring from monomer library to separator/fasta renderer
 
 ## 5.42.15 (2024-09-10)
 

package/package.json

@@ -8,10 +8,10 @@
     "access": "public"
   },
   "friendlyName": "Datagrok bio library",
-  "version": "5.43.1",
+  "version": "5.44.0",
   "description": "Bio utilities, types supporting Macromolecule, Molecule3D data",
   "dependencies": {
-    "@datagrok-libraries/chem-meta": "^1.2.5",
+    "@datagrok-libraries/chem-meta": "^1.2.7",
     "@datagrok-libraries/gridext": "^1.3.71",
     "@datagrok-libraries/ml": "^6.7.1",
     "@datagrok-libraries/utils": "^4.3.0",
@@ -21,6 +21,7 @@
     "dayjs": "latest",
     "fastest-levenshtein": "^1.0.16",
     "js-base64": "^3.7.5",
+    "lru-cache": "^11.0.1",
     "mjolnir.js": "^2.7.0",
     "rxjs": "^6.5.5",
     "uuid": "^9.0.1",
@@ -52,4 +53,4 @@
     "lint": "eslint \"./src/**/*.ts\"",
     "lint-fix": "eslint \"./src/**/*.ts\" --fix"
   }
-}
+}

package/src/helm/helm-helper.d.ts

@@ -1,9 +1,9 @@
 import * as ui from 'datagrok-api/ui';
 import * as DG from 'datagrok-api/dg';
-import type { App } from '@datagrok-libraries/helm-web-editor/helm/App';
+import { Observable } from 'rxjs';
+import type { Point, App, HelmType } from './types';
 import { MonomersFuncs, HelmMol, HelmString, IHelmWebEditor, HelmAtom, IHelmDrawOptions } from './types';
 import { IMonomerLib } from '../types/index';
-import { Observable } from 'rxjs';
 export type IHelmInputInitOptions = ui.input.IInputInitOptions<HelmString | HelmMol> & {
     editable: boolean;
 };
@@ -15,6 +15,17 @@ export declare abstract class HelmInputBase extends DG.JsInputBase<HelmString> {
     abstract redraw(): void;
     abstract showTooltip(content: HTMLElement | string, a: HelmAtom): void;
 }
+/**
+ * @property {Map<number, number>} monomerMap srcPosIdx -> resPosIdx
+ */
+export type HelmConvertRes = {
+    srcHelm: string;
+    resHelm: string;
+    monomerMap: Map<number, number> | null;
+};
+export declare class HelmNotSupportedError extends Error {
+    constructor(message?: string);
+}
 export interface IHelmHelper {
     createHelmInput(name: string, options?: IHelmInputInitOptions): HelmInputBase;
     createHelmWebEditor(host?: HTMLElement, drawOptions?: Partial<IHelmDrawOptions>): IHelmWebEditor;
@@ -26,6 +37,8 @@ export interface IHelmHelper {
     getHoveredAtom(x: number, y: number, mol: HelmMol, height: number): HelmAtom | null;
     /** Gets pseudo molfiles with monomers as atoms */
     getMolfiles(helmStrList: string[]): string[];
+    parse(helm: string, origin?: Point): HelmMol;
+    removeGaps(helm: string): HelmConvertRes;
 }
 export declare function getHelmHelper(): Promise<IHelmHelper>;
 declare module 'datagrok-api/ui' {
@@ -36,4 +49,6 @@ declare module 'datagrok-api/ui' {
         function helmAsync(name: string, options?: IHelmInputInitOptions): Promise<HelmInputBase>;
     }
 }
+/** Inputs logic */
+export declare function getMonomerHandleArgs(a: HelmAtom | HelmType, name?: string): [ /** biotype *//** biotype */ HelmType, /** elem */ string];
 //# sourceMappingURL=helm-helper.d.ts.map

package/src/helm/helm-helper.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"helm-helper.d.ts","sourceRoot":"","sources":["helm-helper.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AACtC,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAGtC,OAAO,KAAK,EAAC,GAAG,EAAC,MAAM,8CAA8C,CAAC;AACtE,OAAO,EACW,aAAa,EAAE,OAAO,EAAE,UAAU,EAAE,cAAc,EAAE,QAAQ,EAAE,gBAAgB,EAC/F,MAAM,SAAS,CAAC;AACjB,OAAO,EAAC,WAAW,EAAC,MAAM,gBAAgB,CAAC;AAC3C,OAAO,EAAC,UAAU,EAAC,MAAM,MAAM,CAAC;AAEhC,MAAM,MAAM,qBAAqB,GAAG,EAAE,CAAC,KAAK,CAAC,iBAAiB,CAAC,UAAU,GAAG,OAAO,CAAC,GAAG;IACrF,QAAQ,EAAE,OAAO,CAAC;CACnB,CAAC;AAEF,8BAAsB,aAAc,SAAQ,EAAE,CAAC,WAAW,CAAC,UAAU,CAAC;IACpE,QAAQ,KAAK,QAAQ,IAAI,OAAO,CAAC;IACjC,QAAQ,KAAK,QAAQ,CAAC,KAAK,EAAE,OAAO,EAAE;IAEtC,QAAQ,KAAK,WAAW,IAAI,UAAU,CAAC,UAAU,CAAC,CAAC;IAEnD,QAAQ,KAAK,OAAO,IAAI,UAAU,CAAC,UAAU,CAAC,CAAC;IAE/C,QAAQ,CAAC,MAAM,IAAI,IAAI;IAEvB,QAAQ,CAAC,WAAW,CAAC,OAAO,EAAE,WAAW,GAAG,MAAM,EAAE,CAAC,EAAE,QAAQ,GAAG,IAAI;CACvE;AAED,MAAM,WAAW,WAAW;IAC1B,eAAe,CAAC,IAAI,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,qBAAqB,GAAG,aAAa,CAAC;IAE9E,mBAAmB,CAAC,IAAI,CAAC,EAAE,WAAW,EAAE,WAAW,CAAC,EAAE,OAAO,CAAC,gBAAgB,CAAC,GAAG,cAAc,CAAC;IAEjG,kBAAkB,CAAC,IAAI,EAAE,cAAc,EAAE,IAAI,CAAC,EAAE,MAAM,GAAG,GAAG,CAAC;IAE7D,IAAI,qBAAqB,IAAI,aAAa,GAAG,IAAI,CAAC;IAElD,yBAAyB,CAAC,UAAU,EAAE,WAAW,GAAG,aAAa,CAAC;IAElE,qBAAqB,CAAC,aAAa,EAAE,aAAa,GAAG,aAAa,CAAC;IACnE,2BAA2B,IAAI,aAAa,CAAC;IAE7C,cAAc,CAAC,CAAC,EAAE,MAAM,EAAE,CAAC,EAAE,MAAM,EAAE,GAAG,EAAE,OAAO,EAAE,MAAM,EAAE,MAAM,GAAG,QAAQ,GAAG,IAAI,CAAC;IAEpF,kDAAkD;IAClD,WAAW,CAAC,WAAW,EAAE,MAAM,EAAE,GAAG,MAAM,EAAE,CAAC;CAC9C;AAED,wBAAsB,aAAa,IAAI,OAAO,CAAC,WAAW,CAAC,CAO1D;AAED,OAAO,QAAQ,iBAAiB,CAAC;IAC/B,UAAiB,KAAK,CAAC;QACrB;;WAEG;QACH,SAAgB,SAAS,CAAC,IAAI,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,qBAAqB,GAAG,OAAO,CAAC,aAAa,CAAC,CAAC;KAClG;CACF"}
+{"version":3,"file":"helm-helper.d.ts","sourceRoot":"","sources":["helm-helper.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AACtC,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAGtC,OAAO,EAAC,UAAU,EAAC,MAAM,MAAM,CAAC;AAEhC,OAAO,KAAK,EAAC,KAAK,EAAE,GAAG,EAAE,QAAQ,EAAC,MAAM,SAAS,CAAC;AAClD,OAAO,EACW,aAAa,EAAE,OAAO,EAAE,UAAU,EAAE,cAAc,EAAE,QAAQ,EAAE,gBAAgB,EAC/F,MAAM,SAAS,CAAC;AACjB,OAAO,EAAC,WAAW,EAAC,MAAM,gBAAgB,CAAC;AAE3C,MAAM,MAAM,qBAAqB,GAAG,EAAE,CAAC,KAAK,CAAC,iBAAiB,CAAC,UAAU,GAAG,OAAO,CAAC,GAAG;IACrF,QAAQ,EAAE,OAAO,CAAC;CACnB,CAAC;AAEF,8BAAsB,aAAc,SAAQ,EAAE,CAAC,WAAW,CAAC,UAAU,CAAC;IACpE,QAAQ,KAAK,QAAQ,IAAI,OAAO,CAAC;IACjC,QAAQ,KAAK,QAAQ,CAAC,KAAK,EAAE,OAAO,EAAE;IAEtC,QAAQ,KAAK,WAAW,IAAI,UAAU,CAAC,UAAU,CAAC,CAAC;IAEnD,QAAQ,KAAK,OAAO,IAAI,UAAU,CAAC,UAAU,CAAC,CAAC;IAE/C,QAAQ,CAAC,MAAM,IAAI,IAAI;IAEvB,QAAQ,CAAC,WAAW,CAAC,OAAO,EAAE,WAAW,GAAG,MAAM,EAAE,CAAC,EAAE,QAAQ,GAAG,IAAI;CACvE;AAED;;GAEG;AACH,MAAM,MAAM,cAAc,GAAG;IAC3B,OAAO,EAAE,MAAM,CAAC;IAChB,OAAO,EAAE,MAAM,CAAC;IAChB,UAAU,EAAE,GAAG,CAAC,MAAM,EAAE,MAAM,CAAC,GAAG,IAAI,CAAC;CACxC,CAAA;AAED,qBAAa,qBAAsB,SAAQ,KAAK;gBAClC,OAAO,CAAC,EAAE,MAAM;CAG7B;AAED,MAAM,WAAW,WAAW;IAC1B,eAAe,CAAC,IAAI,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,qBAAqB,GAAG,aAAa,CAAC;IAE9E,mBAAmB,CAAC,IAAI,CAAC,EAAE,WAAW,EAAE,WAAW,CAAC,EAAE,OAAO,CAAC,gBAAgB,CAAC,GAAG,cAAc,CAAC;IAEjG,kBAAkB,CAAC,IAAI,EAAE,cAAc,EAAE,IAAI,CAAC,EAAE,MAAM,GAAG,GAAG,CAAC;IAE7D,IAAI,qBAAqB,IAAI,aAAa,GAAG,IAAI,CAAC;IAElD,yBAAyB,CAAC,UAAU,EAAE,WAAW,GAAG,aAAa,CAAC;IAElE,qBAAqB,CAAC,aAAa,EAAE,aAAa,GAAG,aAAa,CAAC;IACnE,2BAA2B,IAAI,aAAa,CAAC;IAE7C,cAAc,CAAC,CAAC,EAAE,MAAM,EAAE,CAAC,EAAE,MAAM,EAAE,GAAG,EAAE,OAAO,EAAE,MAAM,EAAE,MAAM,GAAG,QAAQ,GAAG,IAAI,CAAC;IAEpF,kDAAkD;IAClD,WAAW,CAAC,WAAW,EAAE,MAAM,EAAE,GAAG,MAAM,EAAE,CAAC;IAE7C,KAAK,CAAC,IAAI,EAAE,MAAM,EAAE,MAAM,CAAC,EAAE,KAAK,GAAG,OAAO,CAAC;IAC7C,UAAU,CAAC,IAAI,EAAE,MAAM,GAAG,cAAc,CAAC;CAC1C;AAED,wBAAsB,aAAa,IAAI,OAAO,CAAC,WAAW,CAAC,CAO1D;AAED,OAAO,QAAQ,iBAAiB,CAAC;IAC/B,UAAiB,KAAK,CAAC;QACrB;;WAEG;QACH,SAAgB,SAAS,CAAC,IAAI,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,qBAAqB,GAAG,OAAO,CAAC,aAAa,CAAC,CAAC;KAClG;CACF;AAOD,mBAAmB;AACnB,wBAAgB,oBAAoB,CAClC,CAAC,EAAE,QAAQ,GAAG,QAAQ,EAAE,IAAI,CAAC,EAAE,MAAM,GACpC,EAAC,cAAc,AAAd,cAAc,CAAC,QAAQ,EAAE,WAAW,CAAC,MAAM,CAAC,CAc/C"}

package/src/helm/helm-helper.js

@@ -2,6 +2,11 @@ import * as ui from 'datagrok-api/ui';
 import * as DG from 'datagrok-api/dg';
 export class HelmInputBase extends DG.JsInputBase {
 }
+export class HelmNotSupportedError extends Error {
+    constructor(message) {
+        super(message);
+    }
+}
 export async function getHelmHelper() {
     const packageName = 'Helm';
     const funcList = DG.Func.find({ package: packageName, name: `getHelmHelper` });
@@ -13,4 +18,21 @@ export async function getHelmHelper() {
 ui.input.helmAsync = async function (name, options) {
     return (await getHelmHelper()).createHelmInput(name, options);
 };
+/** Inputs logic */
+export function getMonomerHandleArgs(a, name) {
+    if (!a)
+        throw new Error(`Argument 'a' of type Atom or HelmType is mandatory.`);
+    let biotype;
+    let elem;
+    const aa = a;
+    if (aa.T === 'ATOM') {
+        biotype = aa.biotype();
+        elem = aa.elem;
+    }
+    else {
+        biotype = a;
+        elem = name;
+    }
+    return [biotype, elem];
+}
 //# sourceMappingURL=helm-helper.js.map

package/src/helm/helm-helper.js.map

@@ -1 +1 @@
-{"version":3,"file":"helm-helper.js","sourceRoot":"","sources":["helm-helper.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AACtC,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AActC,MAAM,OAAgB,aAAc,SAAQ,EAAE,CAAC,WAAuB;CAWrE;AAsBD,MAAM,CAAC,KAAK,UAAU,aAAa;IACjC,MAAM,WAAW,GAAG,MAAM,CAAC;IAC3B,MAAM,QAAQ,GAAG,EAAE,CAAC,IAAI,CAAC,IAAI,CAAC,EAAC,OAAO,EAAE,WAAW,EAAE,IAAI,EAAE,eAAe,EAAC,CAAC,CAAC;IAC7E,IAAI,QAAQ,CAAC,MAAM,KAAK,CAAC;QACvB,MAAM,IAAI,KAAK,CAAC,YAAY,WAAW,qCAAqC,CAAC,CAAC;IAChF,MAAM,GAAG,GAAG,CAAC,MAAM,QAAQ,CAAC,CAAC,CAAC,CAAC,OAAO,EAAE,CAAC,IAAI,EAAE,CAAC,CAAC,mBAAmB,EAAiB,CAAC;IACtF,OAAO,GAAG,CAAC;AACb,CAAC;AAWD,EAAE,CAAC,KAAK,CAAC,SAAS,GAAG,KAAK,WACxB,IAAY,EAAE,OAA+B;IAC7C,OAAO,CAAC,MAAM,aAAa,EAAE,CAAC,CAAC,eAAe,CAAC,IAAI,EAAE,OAAO,CAAC,CAAC;AAChE,CAAC,CAAC"}
+{"version":3,"file":"helm-helper.js","sourceRoot":"","sources":["helm-helper.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AACtC,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAetC,MAAM,OAAgB,aAAc,SAAQ,EAAE,CAAC,WAAuB;CAWrE;AAWD,MAAM,OAAO,qBAAsB,SAAQ,KAAK;IAC9C,YAAY,OAAgB;QAC1B,KAAK,CAAC,OAAO,CAAC,CAAC;IACjB,CAAC;CACF;AAyBD,MAAM,CAAC,KAAK,UAAU,aAAa;IACjC,MAAM,WAAW,GAAG,MAAM,CAAC;IAC3B,MAAM,QAAQ,GAAG,EAAE,CAAC,IAAI,CAAC,IAAI,CAAC,EAAC,OAAO,EAAE,WAAW,EAAE,IAAI,EAAE,eAAe,EAAC,CAAC,CAAC;IAC7E,IAAI,QAAQ,CAAC,MAAM,KAAK,CAAC;QACvB,MAAM,IAAI,KAAK,CAAC,YAAY,WAAW,qCAAqC,CAAC,CAAC;IAChF,MAAM,GAAG,GAAG,CAAC,MAAM,QAAQ,CAAC,CAAC,CAAC,CAAC,OAAO,EAAE,CAAC,IAAI,EAAE,CAAC,CAAC,mBAAmB,EAAiB,CAAC;IACtF,OAAO,GAAG,CAAC;AACb,CAAC;AAWD,EAAE,CAAC,KAAK,CAAC,SAAS,GAAG,KAAK,WACxB,IAAY,EAAE,OAA+B;IAC7C,OAAO,CAAC,MAAM,aAAa,EAAE,CAAC,CAAC,eAAe,CAAC,IAAI,EAAE,OAAO,CAAC,CAAC;AAChE,CAAC,CAAC;AAEF,mBAAmB;AACnB,MAAM,UAAU,oBAAoB,CAClC,CAAsB,EAAE,IAAa;IAErC,IAAI,CAAC,CAAC;QACJ,MAAM,IAAI,KAAK,CAAC,qDAAqD,CAAC,CAAC;IACzE,IAAI,OAAiB,CAAC;IACtB,IAAI,IAAY,CAAC;IACjB,MAAM,EAAE,GAAG,CAAa,CAAC;IACzB,IAAI,EAAE,CAAC,CAAC,KAAK,MAAM,EAAE,CAAC;QACpB,OAAO,GAAG,EAAE,CAAC,OAAO,EAAG,CAAC;QACxB,IAAI,GAAG,EAAE,CAAC,IAAI,CAAC;IACjB,CAAC;SAAM,CAAC;QACN,OAAO,GAAG,CAAa,CAAC;QACxB,IAAI,GAAG,IAAK,CAAC;IACf,CAAC;IACD,OAAO,CAAC,OAAO,EAAE,IAAI,CAAC,CAAC;AACzB,CAAC"}

package/src/helm/types.d.ts

@@ -1,4 +1,5 @@
 import type { HelmType, PolymerType, MonomerType, IWebEditorMonomer, WebEditorRGroups, IMonomerColors, MonomerSetType } from '@datagrok-libraries/js-draw-lite/src/types/org';
+import type { Point } from '@datagrok-libraries/js-draw-lite/src/Point';
 import type { Atom } from '@datagrok-libraries/js-draw-lite/src/Atom';
 import type { IJsAtom } from '@datagrok-libraries/js-draw-lite/src/types/jsdraw2';
 import type { Bond } from '@datagrok-libraries/js-draw-lite/src/Bond';
@@ -14,13 +15,14 @@ import type { OrgType } from '@datagrok-libraries/helm-web-editor/src/types/org-
 import type { Monomers } from '@datagrok-libraries/helm-web-editor/helm/Monomers';
 import type { DojoType, DojoxType } from '@datagrok-libraries/js-draw-lite/src/types/dojo';
 export { HelmType, PolymerType, MonomerType, WebEditorRGroups };
-export { Atom, IJsAtom, Bond, Mol, Editor, MonomerExplorer };
+export { Point, Atom, IJsAtom, Bond, Mol, Editor, MonomerExplorer };
 export { HelmAtom, HelmBond, HelmMol, HelmEditor, HelmString };
 export { IWebEditorMonomer, IMonomerColors, IOrgHelmWebEditor, IOrgHelmMonomers, IHelmDrawOptions, App, Monomers, GetMonomerFunc, GetMonomerResType };
 export { DojoType, DojoxType };
 export { HweWindow, ScilModuleType, JSDraw2ModuleType, OrgType };
 export interface ISeqMonomer {
-    polymerType: PolymerType;
+    position: number;
+    biotype: HelmType;
     symbol: string;
 }
 export interface IHelmWebEditor {

package/src/helm/types.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"types.d.ts","sourceRoot":"","sources":["types.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EACV,QAAQ,EAAE,WAAW,EAAE,WAAW,EAAE,iBAAiB,EAAE,gBAAgB,EAAE,cAAc,EAAE,cAAc,EACxG,MAAM,gDAAgD,CAAC;AAExD,OAAO,KAAK,EAAC,IAAI,EAAC,MAAM,2CAA2C,CAAC;AACpE,OAAO,KAAK,EAAC,OAAO,EAAC,MAAM,oDAAoD,CAAC;AAChF,OAAO,KAAK,EAAC,IAAI,EAAC,MAAM,2CAA2C,CAAC;AACpE,OAAO,KAAK,EAAC,GAAG,EAAC,MAAM,0CAA0C,CAAC;AAClE,OAAO,KAAK,EAAC,MAAM,EAAC,MAAM,oDAAoD,CAAC;AAE/E,OAAO,KAAK,EACV,QAAQ,EAAE,QAAQ,EAAE,OAAO,EAAE,UAAU,EAAE,UAAU,EACnD,iBAAiB,EAAE,gBAAgB,EAAE,cAAc,EAAE,iBAAiB,EAAE,aAAa,EACrF,gBAAgB,EACjB,MAAM,wDAAwD,CAAC;AAChE,OAAO,KAAK,EAAC,SAAS,EAAC,MAAM,+CAA+C,CAAC;AAC7E,OAAO,KAAK,EAAC,eAAe,EAAC,MAAM,0DAA0D,CAAC;AAC9F,OAAO,KAAK,EAAC,GAAG,EAAC,MAAM,8CAA8C,CAAC;AAGtE,OAAO,KAAK,EAAC,WAAW,EAAC,MAAM,2CAA2C,CAAC;AAC3E,OAAO,KAAK,EAAC,iBAAiB,EAAE,cAAc,EAAC,MAAM,4CAA4C,CAAC;AAClG,OAAO,KAAK,EAAC,OAAO,EAAC,MAAM,wDAAwD,CAAC;AACpF,OAAO,KAAK,EAAC,QAAQ,EAAC,MAAM,mDAAmD,CAAC;AAChF,OAAO,KAAK,EAAC,QAAQ,EAAE,SAAS,EAAC,MAAM,iDAAiD,CAAC;AAEzF,OAAO,EAAC,QAAQ,EAAE,WAAW,EAAE,WAAW,EAAE,gBAAgB,EAAC,CAAC;AAC9D,OAAO,EAAC,IAAI,EAAE,OAAO,EAAE,IAAI,EAAE,GAAG,EAAE,MAAM,EAAE,eAAe,EAAC,CAAC;AAE3D,OAAO,EAAC,QAAQ,EAAE,QAAQ,EAAE,OAAO,EAAE,UAAU,EAAE,UAAU,EAAC,CAAC;AAE7D,OAAO,EACL,iBAAiB,EAAE,cAAc,EAAE,iBAAiB,EAAE,gBAAgB,EAAE,gBAAgB,EACxF,GAAG,EAAE,QAAQ,EAAE,cAAc,EAAE,iBAAiB,EACjD,CAAC;AAEF,OAAO,EAAC,QAAQ,EAAE,SAAS,EAAC,CAAC;AAC7B,OAAO,EAAC,SAAS,EAAE,cAAc,EAAE,iBAAiB,EAAE,OAAO,EAAC,CAAC;AAG/D,MAAM,WAAW,WAAW;IAC1B,WAAW,EAAE,WAAW,CAAC;IACzB,MAAM,EAAE,MAAM,CAAC;CAChB;AAED,MAAM,WAAW,cAAc;IAC7B,IAAI,MAAM,IAAI,UAAU,CAAC;IACzB,IAAI,IAAI,IAAI,cAAc,CAAC;IAE3B,YAAY,CAAC,KAAK,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,GAAG,IAAI,CAAC;CACnD;AAED,OAAO,EAAC,cAAc,EAAE,aAAa,EAAE,WAAW,EAAC,CAAC"}
+{"version":3,"file":"types.d.ts","sourceRoot":"","sources":["types.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EACV,QAAQ,EAAE,WAAW,EAAE,WAAW,EAAE,iBAAiB,EAAE,gBAAgB,EAAE,cAAc,EAAE,cAAc,EACxG,MAAM,gDAAgD,CAAC;AAExD,OAAO,KAAK,EAAC,KAAK,EAAC,MAAM,4CAA4C,CAAC;AACtE,OAAO,KAAK,EAAC,IAAI,EAAC,MAAM,2CAA2C,CAAC;AACpE,OAAO,KAAK,EAAC,OAAO,EAAC,MAAM,oDAAoD,CAAC;AAChF,OAAO,KAAK,EAAC,IAAI,EAAC,MAAM,2CAA2C,CAAC;AACpE,OAAO,KAAK,EAAC,GAAG,EAAC,MAAM,0CAA0C,CAAC;AAClE,OAAO,KAAK,EAAC,MAAM,EAAC,MAAM,oDAAoD,CAAC;AAE/E,OAAO,KAAK,EACV,QAAQ,EAAE,QAAQ,EAAE,OAAO,EAAE,UAAU,EAAE,UAAU,EACnD,iBAAiB,EAAE,gBAAgB,EAAE,cAAc,EAAE,iBAAiB,EAAE,aAAa,EACrF,gBAAgB,EACjB,MAAM,wDAAwD,CAAC;AAChE,OAAO,KAAK,EAAC,SAAS,EAAC,MAAM,+CAA+C,CAAC;AAC7E,OAAO,KAAK,EAAC,eAAe,EAAC,MAAM,0DAA0D,CAAC;AAC9F,OAAO,KAAK,EAAC,GAAG,EAAC,MAAM,8CAA8C,CAAC;AAGtE,OAAO,KAAK,EAAC,WAAW,EAAC,MAAM,2CAA2C,CAAC;AAC3E,OAAO,KAAK,EAAC,iBAAiB,EAAE,cAAc,EAAC,MAAM,4CAA4C,CAAC;AAClG,OAAO,KAAK,EAAC,OAAO,EAAC,MAAM,wDAAwD,CAAC;AACpF,OAAO,KAAK,EAAC,QAAQ,EAAC,MAAM,mDAAmD,CAAC;AAChF,OAAO,KAAK,EAAC,QAAQ,EAAE,SAAS,EAAC,MAAM,iDAAiD,CAAC;AAEzF,OAAO,EAAC,QAAQ,EAAE,WAAW,EAAE,WAAW,EAAE,gBAAgB,EAAC,CAAC;AAC9D,OAAO,EAAC,KAAK,EAAE,IAAI,EAAE,OAAO,EAAE,IAAI,EAAE,GAAG,EAAE,MAAM,EAAE,eAAe,EAAC,CAAC;AAElE,OAAO,EAAC,QAAQ,EAAE,QAAQ,EAAE,OAAO,EAAE,UAAU,EAAE,UAAU,EAAC,CAAC;AAE7D,OAAO,EACL,iBAAiB,EAAE,cAAc,EAAE,iBAAiB,EAAE,gBAAgB,EAAE,gBAAgB,EACxF,GAAG,EAAE,QAAQ,EAAE,cAAc,EAAE,iBAAiB,EACjD,CAAC;AAEF,OAAO,EAAC,QAAQ,EAAE,SAAS,EAAC,CAAC;AAC7B,OAAO,EAAC,SAAS,EAAE,cAAc,EAAE,iBAAiB,EAAE,OAAO,EAAC,CAAC;AAG/D,MAAM,WAAW,WAAW;IAC1B,QAAQ,EAAE,MAAM,CAAC;IACjB,OAAO,EAAE,QAAQ,CAAC;IAClB,MAAM,EAAE,MAAM,CAAC;CAChB;AAED,MAAM,WAAW,cAAc;IAC7B,IAAI,MAAM,IAAI,UAAU,CAAC;IACzB,IAAI,IAAI,IAAI,cAAc,CAAC;IAE3B,YAAY,CAAC,KAAK,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,GAAG,IAAI,CAAC;CACnD;AAED,OAAO,EAAC,cAAc,EAAE,aAAa,EAAE,WAAW,EAAC,CAAC"}

package/src/monomer-works/consts.d.ts

@@ -1,3 +1,4 @@
+import { PolymerTypes } from '../helm/consts';
 export declare const monomerWorksConsts: {
     readonly V2K_RGP_SHIFT: 8;
     readonly V2K_RGP_LINE: "M  RGP";
@@ -18,9 +19,18 @@ export declare const monomerWorksConsts: {
     readonly V3K_BEGIN_DATA_LINE: "M  V30 ";
     readonly V3K_END: "M  END";
     readonly PRECISION_FACTOR: 10000;
-    readonly DEOXYRIBOSE: "d";
-    readonly RIBOSE: "r";
-    readonly PHOSPHATE: "p";
+    readonly DEOXYRIBOSE: {
+        readonly polymerType: PolymerTypes.RNA;
+        readonly symbol: "d";
+    };
+    readonly RIBOSE: {
+        readonly polymerType: PolymerTypes.RNA;
+        readonly symbol: "r";
+    };
+    readonly PHOSPHATE: {
+        readonly polymerType: PolymerTypes.RNA;
+        readonly symbol: "p";
+    };
     readonly OXYGEN: "O";
     readonly HYDROGEN: "H";
 };

package/src/monomer-works/consts.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"consts.d.ts","sourceRoot":"","sources":["consts.ts"],"names":[],"mappings":"AAAA,eAAO,MAAM,kBAAkB;;;;;;;;;;;;;;;;;;;;;;;;;CA6BrB,CAAC"}
+{"version":3,"file":"consts.d.ts","sourceRoot":"","sources":["consts.ts"],"names":[],"mappings":"AAAA,OAAO,EAAC,YAAY,EAAC,MAAM,gBAAgB,CAAC;AAE5C,eAAO,MAAM,kBAAkB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;CA8BrB,CAAC"}

package/src/monomer-works/consts.js

@@ -21,9 +21,9 @@ export const monomerWorksConsts = {
     V3K_END: 'M  END',
     PRECISION_FACTOR: 10000, // HELMCoreLibrary has 4 significant digits after decimal point in atom coordinates
     // symbols for the corresponding monomers in HELM library
-    DEOXYRIBOSE: 'd',
-    RIBOSE: 'r',
-    PHOSPHATE: 'p',
+    DEOXYRIBOSE: { polymerType: "RNA" /* PolymerTypes.RNA */, symbol: 'd' },
+    RIBOSE: { polymerType: "RNA" /* PolymerTypes.RNA */, symbol: 'r' },
+    PHOSPHATE: { polymerType: "RNA" /* PolymerTypes.RNA */, symbol: 'p' },
     OXYGEN: 'O',
     HYDROGEN: 'H',
 };

package/src/monomer-works/consts.js.map

@@ -1 +1 @@
-{"version":3,"file":"consts.js","sourceRoot":"","sources":["consts.ts"],"names":[],"mappings":"AAAA,MAAM,CAAC,MAAM,kBAAkB,GAAG;IAClC,sCAAsC;IACpC,aAAa,EAAE,CAAC;IAChB,YAAY,EAAE,QAAQ;IACtB,UAAU,EAAE,KAAK;IACjB,wDAAwD;IACxD,gBAAgB,EAAE,EAAE;IACpB,aAAa,EAAE,CAAC;IAChB,qBAAqB,EAAE,sCAAsC;IAC7D,sBAAsB,EAAE,2CAA2C;IACnE,oBAAoB,EAAE,qBAAqB;IAC3C,kBAAkB,EAAE,mBAAmB;IACvC,qBAAqB,EAAE,gBAAgB;IACvC,sBAAsB,EAAE,UAAU;IAClC,oBAAoB,EAAE,qBAAqB;IAC3C,kBAAkB,EAAE,mBAAmB;IACvC,oBAAoB,EAAE,qBAAqB;IAC3C,kBAAkB,EAAE,mBAAmB;IACvC,eAAe,EAAE,OAAO;IACxB,mBAAmB,EAAE,SAAS;IAC9B,OAAO,EAAE,QAAQ;IACjB,gBAAgB,EAAE,KAAM,EAAE,mFAAmF;IAC7G,yDAAyD;IACzD,WAAW,EAAE,GAAG;IAChB,MAAM,EAAE,GAAG;IACX,SAAS,EAAE,GAAG;IAEd,MAAM,EAAE,GAAG;IACX,QAAQ,EAAE,GAAG;CACL,CAAC"}
+{"version":3,"file":"consts.js","sourceRoot":"","sources":["consts.ts"],"names":[],"mappings":"AAEA,MAAM,CAAC,MAAM,kBAAkB,GAAG;IAClC,sCAAsC;IACpC,aAAa,EAAE,CAAC;IAChB,YAAY,EAAE,QAAQ;IACtB,UAAU,EAAE,KAAK;IACjB,wDAAwD;IACxD,gBAAgB,EAAE,EAAE;IACpB,aAAa,EAAE,CAAC;IAChB,qBAAqB,EAAE,sCAAsC;IAC7D,sBAAsB,EAAE,2CAA2C;IACnE,oBAAoB,EAAE,qBAAqB;IAC3C,kBAAkB,EAAE,mBAAmB;IACvC,qBAAqB,EAAE,gBAAgB;IACvC,sBAAsB,EAAE,UAAU;IAClC,oBAAoB,EAAE,qBAAqB;IAC3C,kBAAkB,EAAE,mBAAmB;IACvC,oBAAoB,EAAE,qBAAqB;IAC3C,kBAAkB,EAAE,mBAAmB;IACvC,eAAe,EAAE,OAAO;IACxB,mBAAmB,EAAE,SAAS;IAC9B,OAAO,EAAE,QAAQ;IACjB,gBAAgB,EAAE,KAAM,EAAE,mFAAmF;IAC7G,yDAAyD;IAEzD,WAAW,EAAE,EAAC,WAAW,8BAAkB,EAAE,MAAM,EAAE,GAAG,EAAC;IACzD,MAAM,EAAE,EAAC,WAAW,8BAAkB,EAAE,MAAM,EAAE,GAAG,EAAC;IACpD,SAAS,EAAE,EAAC,WAAW,8BAAkB,EAAE,MAAM,EAAE,GAAG,EAAC;IAEvD,MAAM,EAAE,GAAG;IACX,QAAQ,EAAE,GAAG;CACL,CAAC"}

package/src/monomer-works/monomer-hover.d.ts

@@ -0,0 +1,10 @@
+import * as DG from 'datagrok-api/dg';
+import { RDModule } from '@datagrok-libraries/chem-meta/src/rdkit-api';
+import { IMonomerLib } from '../types/index';
+import { ISeqMonomer } from '../helm/types';
+import { MonomerHoverLink } from './utils';
+export declare const MonomerHoverLinksTemp = "MonomerHoverLinks";
+export declare function buildMonomerHoverLink(seqCol: DG.Column<string>, molCol: DG.Column<string>, monomerLib: IMonomerLib, rdKitModule: RDModule): MonomerHoverLink;
+export declare function execMonomerHoverLinks(seqGridCell: DG.GridCell, seqMonomer: ISeqMonomer | null): void;
+export declare function getMonomerHoverLinks(seqCol: DG.Column<string>): MonomerHoverLink[];
+//# sourceMappingURL=monomer-hover.d.ts.map

package/src/monomer-works/monomer-hover.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"monomer-hover.d.ts","sourceRoot":"","sources":["monomer-hover.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAMtC,OAAO,EAAC,QAAQ,EAAC,MAAM,6CAA6C,CAAC;AAIrE,OAAO,EAAC,WAAW,EAAC,MAAM,gBAAgB,CAAC;AAC3C,OAAO,EAAC,WAAW,EAAC,MAAM,eAAe,CAAC;AAO1C,OAAO,EAAkB,gBAAgB,EAAC,MAAM,SAAS,CAAC;AAI1D,eAAO,MAAM,qBAAqB,sBAAsB,CAAC;AAUzD,wBAAgB,qBAAqB,CACnC,MAAM,EAAE,EAAE,CAAC,MAAM,CAAC,MAAM,CAAC,EAAE,MAAM,EAAE,EAAE,CAAC,MAAM,CAAC,MAAM,CAAC,EAAE,UAAU,EAAE,WAAW,EAAE,WAAW,EAAE,QAAQ,GACnG,gBAAgB,CAgGlB;AAED,wBAAgB,qBAAqB,CACnC,WAAW,EAAE,EAAE,CAAC,QAAQ,EAAE,UAAU,EAAE,WAAW,GAAG,IAAI,GACvD,IAAI,CAcN;AAED,wBAAgB,oBAAoB,CAAC,MAAM,EAAE,EAAE,CAAC,MAAM,CAAC,MAAM,CAAC,GAAG,gBAAgB,EAAE,CAElF"}

package/src/monomer-works/monomer-hover.js

@@ -0,0 +1,123 @@
+import wu from 'wu';
+import { LRUCache } from 'lru-cache';
+import { addSubstructProvider, getMonomerHover, setMonomerHover } from '@datagrok-libraries/chem-meta/src/types';
+import { HelmTypes } from '../helm/consts';
+import { SeqHandler } from '../utils/seq-handler';
+import { ALPHABET } from '../utils/macromolecule';
+import { getMonomersDictFromLib } from './to-atomic-level';
+import { monomerSeqToMolfile } from './to-atomic-level-utils';
+import { getMolHighlight } from './seq-to-molfile';
+export const MonomerHoverLinksTemp = 'MonomerHoverLinks';
+function addMonomerHoverLink(seqColTemp, resLink) {
+    let mhhList = seqColTemp[MonomerHoverLinksTemp];
+    if (!mhhList)
+        mhhList = seqColTemp[MonomerHoverLinksTemp] = [];
+    mhhList.push(resLink);
+    seqColTemp[MonomerHoverLinksTemp] = mhhList;
+}
+export function buildMonomerHoverLink(seqCol, molCol, monomerLib, rdKitModule) {
+    function buildMonomerMap(seqCol, tableRowIdx) {
+        const seqSH = SeqHandler.forColumn(seqCol);
+        const seqSS = seqSH.getSplitted(tableRowIdx);
+        const biotype = seqSH.alphabet == ALPHABET.RNA || seqSH.alphabet == ALPHABET.DNA ? HelmTypes.NUCLEOTIDE : HelmTypes.AA;
+        const seqMList = wu.count(0).take(seqSS.length)
+            .map((posIdx) => { return { position: posIdx, symbol: seqSS.getCanonical(posIdx), biotype: biotype }; })
+            .toArray();
+        const alphabet = seqSH.alphabet;
+        const polymerType = alphabet == ALPHABET.RNA || alphabet == ALPHABET.DNA ? "RNA" /* PolymerTypes.RNA */ : "PEPTIDE" /* PolymerTypes.PEPTIDE */;
+        const monomersDict = getMonomersDictFromLib([seqMList], polymerType, alphabet, monomerLib, rdKitModule);
+        // Call seq-to-molfile worker core directly
+        const molWM = monomerSeqToMolfile(seqMList, monomersDict, alphabet, polymerType);
+        return molWM.monomers;
+    }
+    const monomerMapLruCache = new LRUCache({ max: 100 });
+    function getMonomerMap(seqCol, tableRowIdx) {
+        const seq = seqCol.get(tableRowIdx);
+        if (seq == null)
+            return null;
+        let resMonomerMap = monomerMapLruCache.get(seq);
+        if (!resMonomerMap) {
+            monomerMapLruCache.set(seq, resMonomerMap = buildMonomerMap(seqCol, tableRowIdx));
+        }
+        return resMonomerMap;
+    }
+    const resLink = {
+        targetCol: molCol,
+        handler: (seqGridCell, seqMonomer, targetGridCol) => {
+            const grid = targetGridCol.grid;
+            const tableRowIdx = seqGridCell.tableRowIndex;
+            const gridRowIdx = seqGridCell.gridRow;
+            const targetGridCell = grid.cell(targetGridCol.name, gridRowIdx);
+            const prev = getMonomerHover();
+            if (!prev || (prev && (prev.dataFrameId != seqCol.dataFrame.id || prev.gridRowIdx != gridRowIdx ||
+                prev.seqColName != seqCol.name || prev.seqPosition != seqMonomer?.position))) {
+                if (prev) {
+                    setMonomerHover(null);
+                    prev.gridCell.grid?.invalidate();
+                }
+                if (!seqMonomer) {
+                    setMonomerHover(null);
+                    return true;
+                }
+                setMonomerHover({
+                    gridCell: targetGridCell,
+                    dataFrameId: seqCol.dataFrame.id,
+                    gridRowIdx: gridRowIdx,
+                    seqColName: seqCol.name,
+                    seqPosition: seqMonomer ? seqMonomer.position : -1,
+                    getSubstruct: () => {
+                        if (!seqMonomer || seqMonomer.symbol === '*')
+                            return undefined;
+                        const molMonomerMap = getMonomerMap(seqCol, tableRowIdx);
+                        if (!molMonomerMap)
+                            return undefined;
+                        const monomerMap = molMonomerMap.get(seqMonomer.position); // single monomer
+                        if (!monomerMap)
+                            return { atoms: [], bonds: [], highlightAtomColors: [], highlightBondColors: [] };
+                        const res = getMolHighlight([monomerMap], monomerLib);
+                        return res;
+                    }
+                });
+                // TODO: Invalidate targetGridCell
+                grid.invalidate();
+            }
+            return true;
+        },
+        /* ISubstructProvider.*/ getSubstruct: (tableRowIdx) => {
+            if (molCol.getTag(".sequence-src-highlight-monomers" /* ChemTags.SEQUENCE_SRC_HL_MONOMERS */) != 'true')
+                return undefined;
+            if (tableRowIdx == null)
+                return undefined;
+            const seq = seqCol.get(tableRowIdx);
+            if (!seq)
+                return undefined;
+            const molMonomerMap = getMonomerMap(seqCol, tableRowIdx);
+            if (!molMonomerMap)
+                return undefined;
+            const res = getMolHighlight(molMonomerMap.values(), monomerLib);
+            return res;
+        }
+    };
+    addMonomerHoverLink(seqCol.temp, resLink);
+    addSubstructProvider(molCol.temp, resLink);
+    return resLink;
+}
+export function execMonomerHoverLinks(seqGridCell, seqMonomer) {
+    const seqCol = seqGridCell.tableColumn;
+    if (!seqCol)
+        return;
+    const mhlList = getMonomerHoverLinks(seqCol);
+    for (let mhlI = mhlList.length - 1; mhlI >= 0; --mhlI) {
+        const mhl = mhlList[mhlI];
+        const molGridCol = seqGridCell.grid.col(mhl.targetCol.name);
+        if (molGridCol) {
+            const handlerRes = mhl.handler(seqGridCell, seqMonomer, molGridCol);
+            if (!handlerRes)
+                break;
+        }
+    }
+}
+export function getMonomerHoverLinks(seqCol) {
+    return seqCol.temp[MonomerHoverLinksTemp] ?? [];
+}
+//# sourceMappingURL=monomer-hover.js.map

package/src/monomer-works/monomer-hover.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"monomer-hover.js","sourceRoot":"","sources":["monomer-hover.ts"],"names":[],"mappings":"AAIA,OAAO,EAAE,MAAM,IAAI,CAAC;AACpB,OAAO,EAAC,QAAQ,EAAC,MAAM,WAAW,CAAC;AAInC,OAAO,EAAC,oBAAoB,EAAE,eAAe,EAAc,eAAe,EAAC,MAAM,yCAAyC,CAAC;AAI3H,OAAO,EAAC,SAAS,EAAe,MAAM,gBAAgB,CAAC;AACvD,OAAO,EAAC,UAAU,EAAC,MAAM,sBAAsB,CAAC;AAChD,OAAO,EAAC,QAAQ,EAAC,MAAM,wBAAwB,CAAC;AAEhD,OAAO,EAAC,sBAAsB,EAAC,MAAM,mBAAmB,CAAC;AACzD,OAAO,EAAC,mBAAmB,EAAC,MAAM,yBAAyB,CAAC;AAE5D,OAAO,EAAC,eAAe,EAAC,MAAM,kBAAkB,CAAC;AAGjD,MAAM,CAAC,MAAM,qBAAqB,GAAG,mBAAmB,CAAC;AAEzD,SAAS,mBAAmB,CAAC,UAAe,EAAE,OAAyB;IACrE,IAAI,OAAO,GAAG,UAAU,CAAC,qBAAqB,CAAC,CAAC;IAChD,IAAI,CAAC,OAAO;QACV,OAAO,GAAG,UAAU,CAAC,qBAAqB,CAAC,GAAG,EAAE,CAAC;IACnD,OAAO,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC;IACtB,UAAU,CAAC,qBAAqB,CAAC,GAAG,OAAO,CAAC;AAC9C,CAAC;AAED,MAAM,UAAU,qBAAqB,CACnC,MAAyB,EAAE,MAAyB,EAAE,UAAuB,EAAE,WAAqB;IAEpG,SAAS,eAAe,CAAC,MAAyB,EAAE,WAAmB;QACrE,MAAM,KAAK,GAAG,UAAU,CAAC,SAAS,CAAC,MAAM,CAAC,CAAC;QAC3C,MAAM,KAAK,GAAG,KAAK,CAAC,WAAW,CAAC,WAAW,CAAC,CAAC;QAC7C,MAAM,OAAO,GAAG,KAAK,CAAC,QAAQ,IAAI,QAAQ,CAAC,GAAG,IAAI,KAAK,CAAC,QAAQ,IAAI,QAAQ,CAAC,GAAG,CAAC,CAAC,CAAC,SAAS,CAAC,UAAU,CAAC,CAAC,CAAC,SAAS,CAAC,EAAE,CAAC;QACvH,MAAM,QAAQ,GAAkB,EAAE,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,KAAK,CAAC,MAAM,CAAC;aAC3D,GAAG,CAAC,CAAC,MAAM,EAAE,EAAE,GAAG,OAAO,EAAC,QAAQ,EAAE,MAAM,EAAE,MAAM,EAAE,KAAK,CAAC,YAAY,CAAC,MAAM,CAAC,EAAE,OAAO,EAAE,OAAO,EAAgB,CAAC,CAAC,CAAC,CAAC;aACpH,OAAO,EAAE,CAAC;QAEb,MAAM,QAAQ,GAAG,KAAK,CAAC,QAAoB,CAAC;QAC5C,MAAM,WAAW,GAAG,QAAQ,IAAI,QAAQ,CAAC,GAAG,IAAI,QAAQ,IAAI,QAAQ,CAAC,GAAG,CAAC,CAAC,8BAAkB,CAAC,qCAAqB,CAAC;QACnH,MAAM,YAAY,GAAG,sBAAsB,CAAC,CAAC,QAAQ,CAAC,EAAE,WAAW,EAAE,QAAQ,EAAE,UAAU,EAAE,WAAW,CAAC,CAAC;QACxG,2CAA2C;QAC3C,MAAM,KAAK,GAAG,mBAAmB,CAAC,QAAQ,EAAE,YAAY,EAAE,QAAQ,EAAE,WAAW,CAAC,CAAC;QACjF,OAAO,KAAK,CAAC,QAAQ,CAAC;IACxB,CAAC;IAED,MAAM,kBAAkB,GAAG,IAAI,QAAQ,CAAqB,EAAC,GAAG,EAAE,GAAG,EAAC,CAAC,CAAC;IAExE,SAAS,aAAa,CAAC,MAAyB,EAAE,WAAmB;QACnE,MAAM,GAAG,GAAG,MAAM,CAAC,GAAG,CAAC,WAAW,CAAC,CAAC;QACpC,IAAI,GAAG,IAAI,IAAI;YAAE,OAAO,IAAI,CAAC;QAE7B,IAAI,aAAa,GAAG,kBAAkB,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC;QAChD,IAAI,CAAC,aAAa,EAAE,CAAC;YACnB,kBAAkB,CAAC,GAAG,CAAC,GAAG,EAAE,aAAa,GAAG,eAAe,CAAC,MAAM,EAAE,WAAW,CAAC,CAAC,CAAC;QACpF,CAAC;QACD,OAAO,aAAa,CAAC;IACvB,CAAC;IAED,MAAM,OAAO,GAAqB;QAChC,SAAS,EAAE,MAAM;QACjB,OAAO,EAAE,CAAC,WAAwB,EAAE,UAA8B,EAAE,aAA4B,EAAW,EAAE;YAC3G,MAAM,IAAI,GAAG,aAAa,CAAC,IAAI,CAAC;YAChC,MAAM,WAAW,GAAG,WAAW,CAAC,aAAc,CAAC;YAC/C,MAAM,UAAU,GAAG,WAAW,CAAC,OAAO,CAAC;YACvC,MAAM,cAAc,GAAG,IAAI,CAAC,IAAI,CAAC,aAAa,CAAC,IAAI,EAAE,UAAU,CAAC,CAAC;YAEjE,MAAM,IAAI,GAAG,eAAe,EAAE,CAAC;YAC/B,IAAI,CAAC,IAAI,IAAI,CAAC,IAAI,IAAI,CAAC,IAAI,CAAC,WAAW,IAAI,MAAM,CAAC,SAAS,CAAC,EAAE,IAAI,IAAI,CAAC,UAAU,IAAI,UAAU;gBAC7F,IAAI,CAAC,UAAU,IAAI,MAAM,CAAC,IAAI,IAAI,IAAI,CAAC,WAAW,IAAI,UAAU,EAAE,QAAQ,CAAC,CAAC,EAC5E,CAAC;gBACD,IAAI,IAAI,EAAE,CAAC;oBACT,eAAe,CAAC,IAAI,CAAC,CAAC;oBACtB,IAAI,CAAC,QAAQ,CAAC,IAAI,EAAE,UAAU,EAAE,CAAC;gBACnC,CAAC;gBACD,IAAI,CAAC,UAAU,EAAE,CAAC;oBAChB,eAAe,CAAC,IAAI,CAAC,CAAC;oBACtB,OAAO,IAAI,CAAC;gBACd,CAAC;gBAED,eAAe,CAAC;oBACd,QAAQ,EAAE,cAAc;oBACxB,WAAW,EAAE,MAAM,CAAC,SAAS,CAAC,EAAE;oBAChC,UAAU,EAAE,UAAU;oBACtB,UAAU,EAAE,MAAM,CAAC,IAAI;oBACvB,WAAW,EAAE,UAAU,CAAC,CAAC,CAAC,UAAU,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,CAAC;oBAClD,YAAY,EAAE,GAA2B,EAAE;wBACzC,IAAI,CAAC,UAAU,IAAI,UAAU,CAAC,MAAM,KAAK,GAAG;4BAC1C,OAAO,SAAS,CAAC;wBAEnB,MAAM,aAAa,GAAG,aAAa,CAAC,MAAM,EAAE,WAAW,CAAC,CAAC;wBACzD,IAAI,CAAC,aAAa;4BAChB,OAAO,SAAS,CAAC;wBAEnB,MAAM,UAAU,GAAG,aAAa,CAAC,GAAG,CAAC,UAAW,CAAC,QAAQ,CAAC,CAAC,CAAC,iBAAiB;wBAC7E,IAAI,CAAC,UAAU;4BAAE,OAAO,EAAC,KAAK,EAAE,EAAE,EAAE,KAAK,EAAE,EAAE,EAAE,mBAAmB,EAAE,EAAE,EAAE,mBAAmB,EAAE,EAAE,EAAC,CAAC;wBAEjG,MAAM,GAAG,GAAe,eAAe,CAAC,CAAC,UAAU,CAAC,EAAE,UAAU,CAAC,CAAC;wBAClE,OAAO,GAAG,CAAC;oBACb,CAAC;iBACF,CAAC,CAAC;gBAEH,kCAAkC;gBAClC,IAAI,CAAC,UAAU,EAAE,CAAC;YACpB,CAAC;YAED,OAAO,IAAI,CAAC;QACd,CAAC;QACD,wBAAwB,CAAA,YAAY,EAAE,CAAC,WAA0B,EAA2B,EAAE;YAC5F,IAAI,MAAM,CAAC,MAAM,4EAAmC,IAAI,MAAM;gBAAE,OAAO,SAAS,CAAC;YACjF,IAAI,WAAW,IAAI,IAAI;gBAAE,OAAO,SAAS,CAAC;YAC1C,MAAM,GAAG,GAAG,MAAM,CAAC,GAAG,CAAC,WAAW,CAAC,CAAC;YACpC,IAAI,CAAC,GAAG;gBAAE,OAAO,SAAS,CAAC;YAE3B,MAAM,aAAa,GAAG,aAAa,CAAC,MAAM,EAAE,WAAW,CAAC,CAAC;YACzD,IAAI,CAAC,aAAa;gBAAE,OAAO,SAAS,CAAC;YACrC,MAAM,GAAG,GAAe,eAAe,CAAC,aAAa,CAAC,MAAM,EAAE,EAAE,UAAU,CAAC,CAAC;YAC5E,OAAO,GAAG,CAAC;QACb,CAAC;KACF,CAAC;IAEF,mBAAmB,CAAC,MAAM,CAAC,IAAI,EAAE,OAAO,CAAC,CAAC;IAC1C,oBAAoB,CAAC,MAAM,CAAC,IAAI,EAAE,OAAO,CAAC,CAAC;IAE3C,OAAO,OAAO,CAAC;AACjB,CAAC;AAED,MAAM,UAAU,qBAAqB,CACnC,WAAwB,EAAE,UAA8B;IAExD,MAAM,MAAM,GAAG,WAAW,CAAC,WAAW,CAAC;IACvC,IAAI,CAAC,MAAM;QAAE,OAAO;IAEpB,MAAM,OAAO,GAAG,oBAAoB,CAAC,MAAM,CAAC,CAAC;IAC7C,KAAK,IAAI,IAAI,GAAG,OAAO,CAAC,MAAM,GAAG,CAAC,EAAE,IAAI,IAAI,CAAC,EAAE,EAAE,IAAI,EAAE,CAAC;QACtD,MAAM,GAAG,GAAG,OAAO,CAAC,IAAI,CAAC,CAAC;QAC1B,MAAM,UAAU,GAAG,WAAW,CAAC,IAAI,CAAC,GAAG,CAAC,GAAG,CAAC,SAAS,CAAC,IAAI,CAAC,CAAC;QAC5D,IAAI,UAAU,EAAE,CAAC;YACf,MAAM,UAAU,GAAG,GAAG,CAAC,OAAO,CAAC,WAAW,EAAE,UAAU,EAAE,UAAU,CAAC,CAAC;YACpE,IAAI,CAAC,UAAU;gBACb,MAAM;QACV,CAAC;IACH,CAAC;AACH,CAAC;AAED,MAAM,UAAU,oBAAoB,CAAC,MAAyB;IAC5D,OAAO,MAAM,CAAC,IAAI,CAAC,qBAAqB,CAAC,IAAI,EAAE,CAAC;AAClD,CAAC"}

package/src/monomer-works/monomer-utils.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"monomer-utils.d.ts","sourceRoot":"","sources":["monomer-utils.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAGtC,OAAO,EAAC,UAAU,EAAC,MAAM,MAAM,CAAC;AAShC,OAAO,EAAC,WAAW,EAAE,WAAW,EAAC,MAAM,gBAAgB,CAAC;AACxD,OAAO,EAAa,YAAY,EAAC,MAAM,8BAA8B,CAAC;AAItE,wBAAgB,cAAc,CAAC,GAAG,EAAE,EAAE,CAAC,MAAM,GAAG,EAAE,CAAC,MAAM,GAAG,IAAI,CAuB/D;AAED,wBAAgB,kBAAkB,CAAC,GAAG,EAAE,EAAE,CAAC,MAAM,EAAE,iBAAiB,EAAE,GAAG,EAAE,GAAG,GAAG,EAAE,EAAE,GAAG,IAAI,CAsB3F;AAED,wBAAgB,wBAAwB,CAAC,IAAI,EAAE,EAAE,CAAC,IAAI,EAAE,iBAAiB,EAAE,GAAG,EAAE,GAAG,GAAG,EAAE,EAAE,GAAG,IAAI,CAkBhG;AAED,wBAAgB,qBAAqB,CAAC,GAAG,EAAE,GAAG,EAAE,GAAG;IAAE,CAAC,GAAG,EAAE,MAAM,GAAG,MAAM,GAAG,GAAG,CAAA;CAAE,CAYjF;AAGD,wBAAgB,2BAA2B,CAAC,KAAK,EAAE,EAAE,CAAC,SAAS,GAAG,GAAG,CAoCpE;AAED,MAAM,WAAW,2BAA2B;IAC1C,IAAI,wBAAwB,IAAI,UAAU,CAAC,IAAI,CAAC,CAAC;IACjD,IAAI,0BAA0B,IAAI,UAAU,CAAC,MAAM,EAAE,CAAC,CAAC;IACvD,IAAI,0BAA0B,IAAI,UAAU,CAAC,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC,CAAC;IAEhE,4BAA4B,CAAC,WAAW,EAAE,MAAM,EAAE,UAAU,EAAE,OAAO,GAAG,IAAI,CAAC;CAC9E;AAED,MAAM,WAAW,sBAAsB;IACrC,IAAI,YAAY,IAAI,2BAA2B,CAAC;IAEhD,oBAAoB,IAAI,MAAM,EAAE,CAAC;IACjC,kCAAkC,IAAI,OAAO,CAAC,MAAM,EAAE,CAAC,CAAC;IAExD,cAAc,CAAC,WAAW,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC,CAAC;IACrE,iBAAiB,CAAC,QAAQ,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC,CAAC;IAEnD,mBAAmB,CAAC,IAAI,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,OAAO,CAAC,WAAW,CAAC,CAAC;CAC3E;AAED,MAAM,WAAW,iBAAiB;IAChC,IAAI,YAAY,IAAI,2BAA2B,CAAC;IAEhD,yEAAyE;IACzE,WAAW,CAAC,OAAO,CAAC,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC,CAAC;IAE7C,+DAA+D;IAC/D,aAAa,IAAI,WAAW,CAAC;IAE7B,6CAA6C;IAC7C,SAAS,IAAI,WAAW,CAAC;IAEzB,2DAA2D;IAC3D,cAAc,IAAI,WAAW,CAAC;IAE9B,cAAc,IAAI,OAAO,CAAC,sBAAsB,CAAC,CAAC;IAElD;;OAEG;IACH,cAAc,CAAC,MAAM,CAAC,EAAE,OAAO,GAAG,OAAO,CAAC,IAAI,CAAC,CAAC;IAEhD,6CAA6C;IAC7C,aAAa,CAAC,MAAM,CAAC,EAAE,OAAO,GAAG,OAAO,CAAC,IAAI,CAAC,CAAC;IAE/C;;OAEG;IACH,eAAe,CAAC,MAAM,CAAC,EAAE,OAAO,GAAG,OAAO,CAAC,IAAI,CAAC,CAAC;IAEjD,6DAA6D;IAC7D,WAAW,CAAC,IAAI,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,OAAO,CAAC,WAAW,CAAC,CAAC;CACnE;AAED,wBAAsB,mBAAmB,IAAI,OAAO,CAAC,iBAAiB,CAAC,CAOtE;AAED;;;;;0EAK0E;AAG1E,wBAAsB,sBAAsB,CAAC,WAAW,EAAE,EAAE,CAAC,MAAM,CAAC,MAAM,CAAC,EAAE,iBAAiB,EAAE,YAAY,GAAG,OAAO,CAAC,EAAE,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC,CAAC;AAC1I,wBAAsB,sBAAsB,CAAC,eAAe,EAAE,EAAE,CAAC,MAAM,CAAC,MAAM,CAAC,EAAE,EAAE,iBAAiB,EAAE,YAAY,GAAG,OAAO,CAAC,EAAE,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC,CAAC;AAgEhJ;;+KAE+K;AAC/K,wBAAsB,0BAA0B,CAAC,UAAU,EAAE,MAAM,EAAE,GAClE,OAAO,CAAC;IAAE,aAAa,EAAE,MAAM,EAAE,EAAE,CAAC;IAAC,eAAe,EAAE;QAAE,CAAC,SAAS,EAAE,MAAM,GAAG,MAAM,CAAA;KAAE,CAAA;CAAE,CAAC,CAqB1F;AAED,wBAAsB,4BAA4B,CAAC,UAAU,EAAE,MAAM,EAAE,EAAE,eAAe,GAAE,MAAiB,GACxG,OAAO,CAAC;IAAE,aAAa,EAAE,MAAM,EAAE,EAAE,CAAC;IAAC,eAAe,EAAE;QAAE,CAAC,SAAS,EAAE,MAAM,GAAG,MAAM,CAAA;KAAE,CAAA;CAAE,CAAC,CAqC1F"}
+{"version":3,"file":"monomer-utils.d.ts","sourceRoot":"","sources":["monomer-utils.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAGtC,OAAO,EAAC,UAAU,EAAC,MAAM,MAAM,CAAC;AAShC,OAAO,EAAC,WAAW,EAAE,WAAW,EAAC,MAAM,gBAAgB,CAAC;AACxD,OAAO,EAAC,YAAY,EAAC,MAAM,8BAA8B,CAAC;AAK1D,wBAAgB,cAAc,CAAC,GAAG,EAAE,EAAE,CAAC,MAAM,GAAG,EAAE,CAAC,MAAM,GAAG,IAAI,CAwB/D;AAED,wBAAgB,kBAAkB,CAAC,GAAG,EAAE,EAAE,CAAC,MAAM,EAAE,iBAAiB,EAAE,GAAG,EAAE,GAAG,GAAG,EAAE,EAAE,GAAG,IAAI,CAsB3F;AAED,wBAAgB,wBAAwB,CAAC,IAAI,EAAE,EAAE,CAAC,IAAI,EAAE,iBAAiB,EAAE,GAAG,EAAE,GAAG,GAAG,EAAE,EAAE,GAAG,IAAI,CAkBhG;AAED,wBAAgB,qBAAqB,CAAC,GAAG,EAAE,GAAG,EAAE,GAAG;IAAE,CAAC,GAAG,EAAE,MAAM,GAAG,MAAM,GAAG,GAAG,CAAA;CAAE,CAYjF;AAGD,wBAAgB,2BAA2B,CAAC,KAAK,EAAE,EAAE,CAAC,SAAS,GAAG,GAAG,CAoCpE;AAED,MAAM,WAAW,2BAA2B;IAC1C,IAAI,wBAAwB,IAAI,UAAU,CAAC,IAAI,CAAC,CAAC;IACjD,IAAI,0BAA0B,IAAI,UAAU,CAAC,MAAM,EAAE,CAAC,CAAC;IACvD,IAAI,0BAA0B,IAAI,UAAU,CAAC,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC,CAAC;IAEhE,4BAA4B,CAAC,WAAW,EAAE,MAAM,EAAE,UAAU,EAAE,OAAO,GAAG,IAAI,CAAC;CAC9E;AAED,MAAM,WAAW,sBAAsB;IACrC,IAAI,YAAY,IAAI,2BAA2B,CAAC;IAEhD,oBAAoB,IAAI,MAAM,EAAE,CAAC;IACjC,kCAAkC,IAAI,OAAO,CAAC,MAAM,EAAE,CAAC,CAAC;IAExD,cAAc,CAAC,WAAW,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC,CAAC;IACrE,iBAAiB,CAAC,QAAQ,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC,CAAC;IAEnD,mBAAmB,CAAC,IAAI,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,OAAO,CAAC,WAAW,CAAC,CAAC;CAC3E;AAED,MAAM,WAAW,iBAAiB;IAChC,IAAI,YAAY,IAAI,2BAA2B,CAAC;IAEhD,yEAAyE;IACzE,WAAW,CAAC,OAAO,CAAC,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC,CAAC;IAE7C,+DAA+D;IAC/D,aAAa,IAAI,WAAW,CAAC;IAE7B,6CAA6C;IAC7C,SAAS,IAAI,WAAW,CAAC;IAEzB,2DAA2D;IAC3D,cAAc,IAAI,WAAW,CAAC;IAE9B,cAAc,IAAI,OAAO,CAAC,sBAAsB,CAAC,CAAC;IAElD;;OAEG;IACH,cAAc,CAAC,MAAM,CAAC,EAAE,OAAO,GAAG,OAAO,CAAC,IAAI,CAAC,CAAC;IAEhD,6CAA6C;IAC7C,aAAa,CAAC,MAAM,CAAC,EAAE,OAAO,GAAG,OAAO,CAAC,IAAI,CAAC,CAAC;IAE/C;;OAEG;IACH,eAAe,CAAC,MAAM,CAAC,EAAE,OAAO,GAAG,OAAO,CAAC,IAAI,CAAC,CAAC;IAEjD,6DAA6D;IAC7D,WAAW,CAAC,IAAI,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,OAAO,CAAC,WAAW,CAAC,CAAC;CACnE;AAED,wBAAsB,mBAAmB,IAAI,OAAO,CAAC,iBAAiB,CAAC,CAOtE;AAED;;;;;0EAK0E;AAG1E,wBAAsB,sBAAsB,CAAC,WAAW,EAAE,EAAE,CAAC,MAAM,CAAC,MAAM,CAAC,EAAE,iBAAiB,EAAE,YAAY,GAAG,OAAO,CAAC,EAAE,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC,CAAC;AAC1I,wBAAsB,sBAAsB,CAAC,eAAe,EAAE,EAAE,CAAC,MAAM,CAAC,MAAM,CAAC,EAAE,EAAE,iBAAiB,EAAE,YAAY,GAAG,OAAO,CAAC,EAAE,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC,CAAC;AAgEhJ;;+KAE+K;AAC/K,wBAAsB,0BAA0B,CAAC,UAAU,EAAE,MAAM,EAAE,GAClE,OAAO,CAAC;IAAE,aAAa,EAAE,MAAM,EAAE,EAAE,CAAC;IAAC,eAAe,EAAE;QAAE,CAAC,SAAS,EAAE,MAAM,GAAG,MAAM,CAAA;KAAE,CAAA;CAAE,CAAC,CAqB1F;AAED,wBAAsB,4BAA4B,CAAC,UAAU,EAAE,MAAM,EAAE,EAAE,eAAe,GAAE,MAAiB,GACxG,OAAO,CAAC;IAAE,aAAa,EAAE,MAAM,EAAE,EAAE,CAAC;IAAC,eAAe,EAAE;QAAE,CAAC,SAAS,EAAE,MAAM,GAAG,MAAM,CAAA;KAAE,CAAA;CAAE,CAAC,CAqC1F"}

package/src/monomer-works/monomer-utils.js

@@ -3,9 +3,9 @@ import * as DG from 'datagrok-api/dg';
 import * as grok from 'datagrok-api/grok';
 import { tanimotoSimilarity } from '@datagrok-libraries/ml/src/distance-metrics-methods';
 import { HELM_CORE_FIELDS, jsonSdfMonomerLibDict, MONOMER_ENCODE_MAX, MONOMER_ENCODE_MIN, SDF_MONOMER_NAME, } from '../utils/const';
-import { GAP_SYMBOL } from '../utils/macromolecule/types';
 import { SeqHandler } from '../utils/seq-handler';
 import { splitAlignedSequences } from '../utils/splitter';
+import { GAP_SYMBOL } from '../utils/macromolecule/consts';
 export function encodeMonomers(col) {
     let encodeSymbol = MONOMER_ENCODE_MIN;
     const monomerSymbolDict = {};
@@ -15,7 +15,8 @@ export function encodeMonomers(col) {
     for (let rowIdx = 0; rowIdx < rowCount; ++rowIdx) {
         let encodedMonomerStr = '';
         const monomers = sh.getSplitted(rowIdx);
-        for (const cm of monomers.canonicals) {
+        for (let posIdx = 0; posIdx < monomers.length; ++posIdx) {
+            const cm = monomers.getCanonical(posIdx);
             if (!monomerSymbolDict[cm]) {
                 if (encodeSymbol > MONOMER_ENCODE_MAX) {
                     grok.shell.error(`Not enough symbols to encode monomers`);

package/src/monomer-works/monomer-utils.js.map

@@ -1 +1 @@
-{"version":3,"file":"monomer-utils.js","sourceRoot":"","sources":["monomer-utils.ts"],"names":[],"mappings":"AAAA,yCAAyC;AACzC,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AACtC,OAAO,KAAK,IAAI,MAAM,mBAAmB,CAAC;AAK1C,OAAO,EAAC,kBAAkB,EAAC,MAAM,qDAAqD,CAAC;AAEvF,OAAO,EACQ,gBAAgB,EAAsB,qBAAqB,EACxE,kBAAkB,EAAE,kBAAkB,EAAE,gBAAgB,GACzD,MAAM,gBAAgB,CAAC;AAExB,OAAO,EAAC,UAAU,EAAe,MAAM,8BAA8B,CAAC;AACtE,OAAO,EAAC,UAAU,EAAC,MAAM,sBAAsB,CAAC;AAChD,OAAO,EAAC,qBAAqB,EAAC,MAAM,mBAAmB,CAAC;AAExD,MAAM,UAAU,cAAc,CAAC,GAAc;IAC3C,IAAI,YAAY,GAAG,kBAAkB,CAAC;IACtC,MAAM,iBAAiB,GAA8B,EAAE,CAAC;IACxD,MAAM,EAAE,GAAG,UAAU,CAAC,SAAS,CAAC,GAAG,CAAC,CAAC;IACrC,MAAM,kBAAkB,GAAG,EAAE,CAAC;IAC9B,MAAM,QAAQ,GAAG,GAAG,CAAC,MAAM,CAAC;IAC5B,KAAK,IAAI,MAAM,GAAG,CAAC,EAAE,MAAM,GAAG,QAAQ,EAAE,EAAE,MAAM,EAAE,CAAC;QACjD,IAAI,iBAAiB,GAAG,EAAE,CAAC;QAC3B,MAAM,QAAQ,GAAG,EAAE,CAAC,WAAW,CAAC,MAAM,CAAC,CAAC;QACxC,KAAK,MAAM,EAAE,IAAI,QAAQ,CAAC,UAAU,EAAE,CAAC;YACrC,IAAI,CAAC,iBAAiB,CAAC,EAAE,CAAC,EAAE,CAAC;gBAC3B,IAAI,YAAY,GAAG,kBAAkB,EAAE,CAAC;oBACtC,IAAI,CAAC,KAAK,CAAC,KAAK,CAAC,uCAAuC,CAAC,CAAC;oBAC1D,OAAO,IAAI,CAAC;gBACd,CAAC;gBACD,iBAAiB,CAAC,EAAE,CAAC,GAAG,YAAY,CAAC;gBACrC,YAAY,EAAE,CAAC;YACjB,CAAC;YACD,iBAAiB,IAAI,MAAM,CAAC,aAAa,CAAC,iBAAiB,CAAC,EAAE,CAAC,CAAC,CAAC;QACnE,CAAC;QACD,kBAAkB,CAAC,IAAI,CAAC,iBAAiB,CAAC,CAAC;IAC7C,CAAC;IACD,OAAO,EAAE,CAAC,MAAM,CAAC,WAAW,CAAC,kBAAkB,EAAE,kBAAkB,CAAC,CAAC;AACvE,CAAC;AAED,MAAM,UAAU,kBAAkB,CAAC,GAAc,EAAE,iBAAwB;IACzE,MAAM,EAAE,GAAG,UAAU,CAAC,SAAS,CAAC,GAAG,CAAC,CAAC;IACrC,MAAM,YAAY,GAAG,qBAAqB,CAAC,iBAAiB,CAAC,CAAC;IAC9D,MAAM,QAAQ,GAAG,EAAE,CAAC;IACpB,MAAM,QAAQ,GAAG,GAAG,CAAC,MAAM,CAAC;IAC5B,KAAK,IAAI,MAAM,GAAG,CAAC,EAAE,MAAM,GAAG,QAAQ,EAAE,EAAE,MAAM,EAAE,CAAC;QACjD,MAAM,QAAQ,GAAG,EAAE,CAAC,WAAW,CAAC,MAAM,CAAC,CAAC;QACxC,MAAM,cAAc,GAAG,EAAE,CAAC;QAC1B,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,QAAQ,CAAC,MAAM,EAAE,EAAE,CAAC,EAAE,CAAC;YACzC,MAAM,EAAE,GAAG,QAAQ,CAAC,YAAY,CAAC,CAAC,CAAC,CAAC;YACpC,IAAI,EAAE,EAAE,CAAC;gBACP,IAAI,CAAC,YAAY,CAAC,EAAE,CAAC,EAAE,CAAC;oBACtB,IAAI,CAAC,KAAK,CAAC,OAAO,CAAC,WAAW,EAAE,0DAA0D,CAAC,CAAC;oBAC5F,OAAO,IAAI,CAAC;gBACd,CAAC;gBACD,2CAA2C;gBAC3C,cAAc,CAAC,IAAI,CAAC,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,SAAS,CAAC,YAAY,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC;YACpE,CAAC;QACH,CAAC;QACD,QAAQ,CAAC,IAAI,CAAC,cAAc,CAAC,CAAC;IAChC,CAAC;IACD,OAAO,QAAQ,CAAC;AAClB,CAAC;AAED,MAAM,UAAU,wBAAwB,CAAC,IAAa,EAAE,iBAAwB;IAC9E,MAAM,EAAE,GAAG,UAAU,CAAC,SAAS,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC;IAC7C,MAAM,YAAY,GAAG,qBAAqB,CAAC,iBAAiB,CAAC,CAAC;IAC9D,MAAM,QAAQ,GAAG,EAAE,CAAC;IACpB,MAAM,QAAQ,GAAG,EAAE,CAAC,WAAW,CAAC,IAAI,CAAC,QAAQ,CAAC,CAAC;IAC/C,MAAM,cAAc,GAAG,EAAE,CAAC;IAC1B,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,QAAQ,CAAC,MAAM,EAAE,EAAE,CAAC,EAAE,CAAC;QACzC,MAAM,EAAE,GAAG,QAAQ,CAAC,YAAY,CAAC,CAAC,CAAC,CAAC;QACpC,IAAI,EAAE,EAAE,CAAC;YACP,IAAI,CAAC,YAAY,CAAC,EAAE,CAAC,EAAE,CAAC;gBACtB,IAAI,CAAC,KAAK,CAAC,OAAO,CAAC,WAAW,EAAE,0DAA0D,CAAC,CAAC;gBAC5F,OAAO,IAAI,CAAC;YACd,CAAC;YACD,cAAc,CAAC,IAAI,CAAC,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,SAAS,CAAC,YAAY,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC;QACpE,CAAC;IACH,CAAC;IACD,QAAQ,CAAC,IAAI,CAAC,cAAc,CAAC,CAAC;IAC9B,OAAO,QAAQ,CAAC;AAClB,CAAC;AAED,MAAM,UAAU,qBAAqB,CAAC,GAAU;IAC9C,MAAM,IAAI,GAAoC,EAAE,CAAC;IACjD,GAAG,CAAC,OAAO,CAAC,CAAC,EAAE,EAAE,EAAE;QACjB,IAAI,EAAE,CAAC,aAAa,CAAC,KAAK,SAAS,EAAE,CAAC;YACpC,MAAM,aAAa,GAA2B,EAAE,CAAC;YACjD,gBAAgB,CAAC,OAAO,CAAC,CAAC,KAAK,EAAE,EAAE;gBACjC,aAAa,CAAC,KAAK,CAAC,GAAG,EAAE,CAAC,KAAK,CAAC,CAAC;YACnC,CAAC,CAAC,CAAC;YACH,IAAI,CAAC,EAAE,mCAAoB,CAAC,GAAG,aAAa,CAAC;QAC/C,CAAC;IACH,CAAC,CAAC,CAAC;IACH,OAAO,IAAI,CAAC;AACd,CAAC;AAGD,MAAM,UAAU,2BAA2B,CAAC,KAAmB;;IAC7D,MAAM,SAAS,GAAG,EAAE,CAAC;IACrB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,KAAK,CAAC,QAAQ,EAAE,CAAC,EAAE,EAAE,CAAC;QACxC,MAAM,OAAO,GAAoC,EAAE,CAAC;QACpD,MAAM,CAAC,IAAI,CAAC,qBAAqB,CAAC,CAAC,OAAO,CAAC,CAAC,GAAG,EAAE,EAAE;YACjD,IAAI,GAAG,sCAAuB,EAAE,CAAC;gBAC/B,MAAM,aAAa,GAAG,KAAK,CAAC,GAAG,CAAC,qBAAqB,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC,CAAC;gBAC/D,OAAO,CAAC,GAAG,CAAC,GAAG,aAAa,KAAK,GAAG,CAAC,CAAC,CAAC,KAAK,CAAC,GAAG,CAAC,gBAAgB,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,aAAa,CAAC;YACxF,CAAC;iBAAM,IAAI,GAAG,wCAAwB,EAAE,CAAC;gBACvC,MAAM,OAAO,GAAG,KAAK,CAAC,GAAG,CAAC,qBAAqB,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC;gBACrE,MAAM,WAAW,GAAU,EAAE,CAAC;gBAC9B,OAAO,CAAC,OAAO,CAAC,CAAC,CAAS,EAAE,EAAE;oBAC5B,MAAM,MAAM,GAAoC,EAAE,CAAC;oBACnD,MAAM,OAAO,GAAG,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,WAAW,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,CAAC;oBACpD,MAAM,UAAU,GAAG,CAAC,CAAC,KAAK,CAAC,YAAY,CAAE,CAAC,CAAC,CAAC,CAAC;oBAC7C,MAAM,4DAAqC,GAAG,OAAO,KAAK,GAAG,CAAC,CAAC,CAAC,MAAM,UAAU,MAAM,CAAC,CAAC,CAAC,OAAO,UAAU,GAAG,CAAC;oBAC9G,MAAM,qDAAiC,GAAG,OAAO,KAAK,GAAG,CAAC,CAAC,CAAC,IAAI,UAAU,IAAI,CAAC,CAAC,CAAC,IAAI,UAAU,KAAK,CAAC;oBACrG,MAAM,wDAAmC,GAAG,OAAO,KAAK,GAAG,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,IAAI,CAAC;oBACzE,MAAM,wCAA0B,GAAG,IAAI,UAAU,EAAE,CAAC;oBACpD,WAAW,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC;gBAC3B,CAAC,CAAC,CAAC;gBACH,OAAO,CAAC,GAAG,CAAC,GAAG,WAAW,CAAC;YAC7B,CAAC;iBAAM,CAAC;gBACN,IAAK,qBAAyD,CAAC,GAAG,CAAC;oBACjE,OAAO,CAAC,GAAG,CAAC,GAAG,KAAK,CAAC,GAAG,CAAE,qBAAyD,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC,CAAC;YACjG,CAAC;QACH,CAAC,CAAC,CAAC;QACH,OAAO,qDAAP,OAAO,OAAiC,EAAE,EAAC;QAC3C,OAAO,6CAAP,OAAO,OAA6B,CAAC,EAAC;QACtC,OAAO,qDAAP,OAAO,OAAiC,EAAE,EAAC;QAC3C,OAAO,gEAAP,OAAO,OAAuC,UAAU,EAAC;QACzD,OAAO,8DAAP,OAAO,OAAsC,IAAI,EAAC;QAElD,SAAS,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC;IAC1B,CAAC;IACD,OAAO,SAAS,CAAC;AACnB,CAAC;AAwDD,MAAM,CAAC,KAAK,UAAU,mBAAmB;IACvC,MAAM,QAAQ,GAAG,EAAE,CAAC,IAAI,CAAC,IAAI,CAAC,EAAC,OAAO,EAAE,KAAK,EAAE,IAAI,EAAE,qBAAqB,EAAC,CAAC,CAAC;IAC7E,IAAI,QAAQ,CAAC,MAAM,KAAK,CAAC;QACvB,MAAM,IAAI,KAAK,CAAC,uDAAuD,CAAC,CAAC;IAE3E,MAAM,GAAG,GAAsB,CAAC,MAAM,QAAQ,CAAC,CAAC,CAAC,CAAC,OAAO,EAAE,CAAC,IAAI,EAAE,CAAC,CAAC,mBAAmB,EAAuB,CAAC;IAC/G,OAAO,GAAG,CAAC;AACb,CAAC;AAYD,MAAM,CAAC,KAAK,UAAU,sBAAsB,CAC1C,eAAwD,EAAE,iBAA+B;IAEzF,2BAA2B;IAC3B,IAAI,eAAe,YAAY,EAAE,CAAC,MAAM;QACtC,eAAe,GAAG,qBAAqB,CAAC,eAAe,CAAC,CAAC,OAAO,CAAC,MAAM,EAAE,CAAC;IAE5E,MAAM,SAAS,GAAG,MAAM,mBAAmB,EAAE,CAAC;IAC9C,MAAM,UAAU,GAAG,SAAS,CAAC,aAAa,EAAE,CAAC;IAC7C,yEAAyE;IACzE,MAAM,OAAO,GAAsE,IAAI,KAAK,CAAC,eAAe,CAAC,MAAM,CAAC,CAAC;IACrH,MAAM,QAAQ,GAAG,eAAe,CAAC,CAAC,CAAC,CAAC,MAAM,CAAC;IAC3C,MAAM,eAAe,GAAG,IAAI,YAAY,CAAC,QAAQ,CAAC,CAAC;IAEnD,4BAA4B;IAC5B,KAAK,IAAI,QAAQ,GAAG,CAAC,EAAE,QAAQ,GAAG,eAAe,CAAC,MAAM,EAAE,EAAE,QAAQ,EAAE,CAAC;QACrE,MAAM,yBAAyB,GAAG,QAAQ,GAAG,iBAAiB,CAAC,MAAM,CAAC,CAAC;YACrE,iBAAiB,CAAC,YAAY,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,UAAU,CAAC;QACxD,MAAM,YAAY,GAAG,UAAU,CAAC,UAAU,CAAC,SAAS,EAAE,yBAAyB,CAAC,EAAE,MAAM,IAAI,EAAE,CAAC;QAE/F,MAAM,UAAU,GAAG,eAAe,CAAC,QAAQ,CAAC,CAAC;QAC7C,MAAM,cAAc,GAAG,UAAU,CAAC,UAAU,EAAiB,CAAC;QAC9D,MAAM,oBAAoB,GAAG,UAAU,CAAC,UAAU,CAAC;QACnD,MAAM,gBAAgB,GAAG,oBAAoB,CAAC,OAAO,CAAC,EAAE,CAAC,CAAC;QAC1D,OAAO,CAAC,QAAQ,CAAC,GAAG,EAAC,UAAU,EAAE,oBAAoB,EAAE,IAAI,EAAE,cAAc,EAAE,UAAU,EAAE,gBAAgB,EAAC,CAAC;QAC3G,IAAI,OAAO,yBAAyB,KAAK,WAAW;YAClD,SAAS;QAEX,6BAA6B;QAC7B,MAAM,MAAM,GAAG,EAAE,CAAC,MAAM,CAAC,WAAW,CAAC,QAAQ,EAC3C,oBAAoB,CAAC,GAAG,CAAC,CAAC,GAAG,EAAE,EAAE,CAAC,UAAU,CAAC,UAAU,CAAC,SAAS,EAAE,GAAG,CAAC,EAAE,MAAM,IAAI,EAAE,CAAC,CAAC,CAAC;QAC1F,MAAM,GAAG,GAAG,EAAE,CAAC,SAAS,CAAC,WAAW,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,sDAAsD;QACtG,MAAM,aAAa,GAA6B,CAAC,MAAM,IAAI,CAAC,IAAI,CAAC,eAAe,CAAC,MAAM,EAAE,YAAY,CAAC,CAAE,CAAC;QACzG,MAAM,iBAAiB,GAAwB,aAAa,CAAC,CAAC,CAAE,aAAa,CAAC,UAAU,EAAmB,CAAC,CAAC,CAAC,IAAI,CAAC;QAEnH,KAAK,IAAI,MAAM,GAAG,CAAC,EAAE,MAAM,GAAG,QAAQ,EAAE,EAAE,MAAM,EAAE,CAAC;YACjD,MAAM,kBAAkB,GAAG,cAAc,CAAC,MAAM,CAAC,CAAC;YAClD,IAAI,yBAAyB,KAAK,UAAU,IAAI,kBAAkB,KAAK,gBAAgB,EAAE,CAAC;gBACxF,eAAe,CAAC,MAAM,CAAC,IAAI,iBAAkB,CAAC,kBAAkB,CAAC,CAAC;YACpE,CAAC;iBAAM,IAAI,yBAAyB,KAAK,UAAU,IAAI,kBAAkB,KAAK,gBAAgB,EAAE,CAAC;gBAC/F,eAAe,CAAC,MAAM,CAAC,IAAI,CAAC,CAAC;YAC/B,CAAC,CAAC,iEAAiE;QACrE,CAAC;IACH,CAAC;IAED,KAAK,IAAI,eAAe,GAAG,CAAC,EAAE,eAAe,GAAG,eAAe,CAAC,MAAM,EAAE,EAAE,eAAe,EAAE,CAAC;QAC1F,IAAI,iBAAiB,GAAG,eAAe,CAAC,eAAe,CAAC,GAAG,iBAAiB,CAAC,MAAM,CAAC;QACpF,KAAK,IAAI,QAAQ,GAAG,CAAC,EAAE,QAAQ,GAAG,eAAe,CAAC,MAAM,EAAE,EAAE,QAAQ,EAAE,CAAC;YACrE,MAAM,aAAa,GAAG,OAAO,CAAC,QAAQ,CAAC,CAAC;YACxC,IAAI,CAAC,QAAQ,IAAI,iBAAiB,CAAC,MAAM,IAAI,aAAa,CAAC,IAAI,CAAC,eAAe,CAAC,KAAK,aAAa,CAAC,UAAU,CAAC;gBAC5G,CAAC,aAAa,CAAC,IAAI,CAAC,eAAe,CAAC,KAAK,aAAa,CAAC,UAAU,IAAI,QAAQ,GAAG,iBAAiB,CAAC,MAAM,CAAC,EAAE,CAAC;gBAC5G,iBAAiB,GAAG,EAAE,CAAC,UAAU,CAAC;gBAClC,MAAM;YACR,CAAC;QACH,CAAC;QACD,eAAe,CAAC,eAAe,CAAC,GAAG,iBAAiB,CAAC;IACvD,CAAC;IAED,MAAM,aAAa,GAAG,EAAE,CAAC,MAAM,CAAC,gBAAgB,CAAC,YAAY,EAAE,eAAe,CAAC,CAAC;IAChF,OAAO,aAAa,CAAC;AACvB,CAAC;AAED,4BAA4B;AAC5B;;+KAE+K;AAC/K,MAAM,CAAC,KAAK,UAAU,0BAA0B,CAAC,UAAoB;IAEnE,2BAA2B;IAC3B,MAAM,SAAS,GAAG,MAAM,mBAAmB,EAAE,CAAC;IAC9C,MAAM,UAAU,GAAG,SAAS,CAAC,aAAa,EAAE,CAAC;IAC7C,MAAM,aAAa,GAAe,EAAE,CAAC;IACrC,MAAM,eAAe,GAA6B,EAAE,CAAC;IACrD,MAAM,gBAAgB,GAAG,UAAU,CAAC,GAAG,CAAC,CAAC,OAAO,EAAE,EAAE,CAAC,UAAU,CAAC,UAAU,CAAC,SAAS,EAAE,OAAO,CAAC,EAAE,MAAM,IAAI,EAAE,CAAC,CAAC;IAC9G,MAAM,mBAAmB,GAAG,EAAE,CAAC,MAAM,CAAC,WAAW,CAAC,QAAQ,EAAE,gBAAgB,CAAC,CAAC;IAE9E,KAAK,IAAI,YAAY,GAAG,CAAC,EAAE,YAAY,GAAG,gBAAgB,CAAC,MAAM,EAAE,EAAE,YAAY,EAAE,CAAC;QAClF,MAAM,OAAO,GAAG,UAAU,CAAC,YAAY,CAAC,CAAC;QACzC,eAAe,CAAC,OAAO,CAAC,GAAG,YAAY,CAAC;QACxC,MAAM,UAAU,GAAG,gBAAgB,CAAC,YAAY,CAAC,CAAC;QAClD,MAAM,gBAAgB,GAAG,UAAU,KAAK,EAAE,CAAC,CAAC,CAAC,IAAI,KAAK,CAAC,gBAAgB,CAAC,MAAM,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC;YACvF,CAAC,MAAM,IAAI,CAAC,IAAI,CAAC,eAAe,CAAC,mBAAmB,EAAE,UAAU,CAAC,CAAE,CAAC,UAAU,EAAE,CAAC;QACnF,gBAAgB,CAAC,YAAY,CAAC,GAAG,CAAC,CAAC;QAEnC,aAAa,CAAC,YAAY,CAAC,GAAG,KAAK,CAAC,IAAI,CAAC,gBAAgB,CAAC,CAAC;IAC7D,CAAC;IAED,OAAO,EAAC,aAAa,EAAE,eAAe,EAAC,CAAC;AAC1C,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,4BAA4B,CAAC,UAAoB,EAAE,kBAA0B,QAAQ;IAEzG,MAAM,SAAS,GAAG,MAAM,mBAAmB,EAAE,CAAC;IAC9C,MAAM,UAAU,GAAG,SAAS,CAAC,aAAa,EAAE,CAAC;IAC7C,MAAM,aAAa,GACjB,IAAI,KAAK,CAAC,UAAU,CAAC,MAAM,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,GAAG,EAAE,CAAC,IAAI,KAAK,CAAC,UAAU,CAAC,MAAM,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC;IACvF,MAAM,eAAe,GAA6B,EAAE,CAAC;IACrD,mHAAmH;IACnH,MAAM,gBAAgB,GAAG,UAAU,CAAC,GAAG,CAAC,CAAC,OAAO,EAAE,EAAE,CAAC,UAAU,CAAC,UAAU,CAAC,SAAS,EAAE,OAAO,CAAC,EAAE,OAAO,IAAI,UAAU,CAAC,UAAU,CAAC,SAAS,EAAE,OAAO,CAAC,EAAE,MAAM,IAAI,EAAE,CAAC,CAAC;IACpK,MAAM,gBAAgB,GAAG,EAAE,CAAC,IAAI,CAAC,IAAI,CAAC,EAAC,OAAO,EAAE,MAAM,EAAE,IAAI,EAAE,iBAAiB,EAAC,CAAC,CAAC,CAAC,CAAC,CAAC;IACrF,IAAI,CAAC,gBAAgB,EAAE,CAAC;QACtB,OAAO,CAAC,IAAI,CAAC,mGAAmG,CAAC,CAAC;QAClH,OAAO,MAAM,0BAA0B,CAAC,UAAU,CAAC,CAAC;IACtD,CAAC;IACD,MAAM,mBAAmB,GAAG,EAAE,CAAC,MAAM,CAAC,WAAW,CAAC,QAAQ,EAAE,gBAAgB,CAAC,CAAC;IAC9E,8BAA8B;IAC9B,MAAM,YAAY,GAAG,EAAE,CAAC,SAAS,CAAC,WAAW,CAAC,CAAC,mBAAmB,CAAC,CAAC,CAAC;IACrE,MAAM,YAAY,GAChB,CAAC,MAAM,gBAAgB,CAAC,KAAK,CAAC,EAAC,GAAG,EAAE,mBAAmB,EAAE,eAAe,EAAE,eAAe,EAAC,CAAC,CAAC,EAAE,OAAQ,CAAC;IACzG,IAAI,CAAC,YAAY,EAAE,CAAC;QAClB,OAAO,CAAC,IAAI,CAAC,GAAG,eAAe;0CACO,CAAC,CAAC;QACxC,OAAO,MAAM,0BAA0B,CAAC,UAAU,CAAC,CAAC;IACtD,CAAC;IAED,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,YAAY,CAAC,MAAM,EAAE,EAAE,CAAC,EAAE,CAAC;QAC7C,aAAa,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC;QACxB,eAAe,CAAC,UAAU,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC;QACnC,IAAI,CAAC,YAAY,CAAC,CAAC,CAAC;YAClB,SAAS;QACX,KAAK,IAAI,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,YAAY,CAAC,MAAM,EAAE,EAAE,CAAC,EAAE,CAAC;YACjD,IAAI,CAAC,YAAY,CAAC,CAAC,CAAC;gBAClB,SAAS;YACX,aAAa;YACb,aAAa,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,aAAa,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,kBAAkB,CAAC,YAAY,CAAC,CAAC,CAAE,EAAE,YAAY,CAAC,CAAC,CAAE,CAAC,CAAC;QACrG,CAAC;IACH,CAAC;IACD,OAAO,EAAC,aAAa,EAAE,eAAe,EAAC,CAAC;AAC1C,CAAC;AAAA,CAAC"}
+{"version":3,"file":"monomer-utils.js","sourceRoot":"","sources":["monomer-utils.ts"],"names":[],"mappings":"AAAA,yCAAyC;AACzC,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AACtC,OAAO,KAAK,IAAI,MAAM,mBAAmB,CAAC;AAK1C,OAAO,EAAC,kBAAkB,EAAC,MAAM,qDAAqD,CAAC;AAEvF,OAAO,EACQ,gBAAgB,EAAsB,qBAAqB,EACxE,kBAAkB,EAAE,kBAAkB,EAAE,gBAAgB,GACzD,MAAM,gBAAgB,CAAC;AAGxB,OAAO,EAAC,UAAU,EAAC,MAAM,sBAAsB,CAAC;AAChD,OAAO,EAAC,qBAAqB,EAAC,MAAM,mBAAmB,CAAC;AACxD,OAAO,EAAC,UAAU,EAAC,MAAM,+BAA+B,CAAC;AAEzD,MAAM,UAAU,cAAc,CAAC,GAAc;IAC3C,IAAI,YAAY,GAAG,kBAAkB,CAAC;IACtC,MAAM,iBAAiB,GAA8B,EAAE,CAAC;IACxD,MAAM,EAAE,GAAG,UAAU,CAAC,SAAS,CAAC,GAAG,CAAC,CAAC;IACrC,MAAM,kBAAkB,GAAG,EAAE,CAAC;IAC9B,MAAM,QAAQ,GAAG,GAAG,CAAC,MAAM,CAAC;IAC5B,KAAK,IAAI,MAAM,GAAG,CAAC,EAAE,MAAM,GAAG,QAAQ,EAAE,EAAE,MAAM,EAAE,CAAC;QACjD,IAAI,iBAAiB,GAAG,EAAE,CAAC;QAC3B,MAAM,QAAQ,GAAG,EAAE,CAAC,WAAW,CAAC,MAAM,CAAC,CAAC;QACxC,KAAK,IAAI,MAAM,GAAG,CAAC,EAAE,MAAM,GAAG,QAAQ,CAAC,MAAM,EAAE,EAAE,MAAM,EAAE,CAAC;YACxD,MAAM,EAAE,GAAG,QAAQ,CAAC,YAAY,CAAC,MAAM,CAAC,CAAC;YACzC,IAAI,CAAC,iBAAiB,CAAC,EAAE,CAAC,EAAE,CAAC;gBAC3B,IAAI,YAAY,GAAG,kBAAkB,EAAE,CAAC;oBACtC,IAAI,CAAC,KAAK,CAAC,KAAK,CAAC,uCAAuC,CAAC,CAAC;oBAC1D,OAAO,IAAI,CAAC;gBACd,CAAC;gBACD,iBAAiB,CAAC,EAAE,CAAC,GAAG,YAAY,CAAC;gBACrC,YAAY,EAAE,CAAC;YACjB,CAAC;YACD,iBAAiB,IAAI,MAAM,CAAC,aAAa,CAAC,iBAAiB,CAAC,EAAE,CAAC,CAAC,CAAC;QACnE,CAAC;QACD,kBAAkB,CAAC,IAAI,CAAC,iBAAiB,CAAC,CAAC;IAC7C,CAAC;IACD,OAAO,EAAE,CAAC,MAAM,CAAC,WAAW,CAAC,kBAAkB,EAAE,kBAAkB,CAAC,CAAC;AACvE,CAAC;AAED,MAAM,UAAU,kBAAkB,CAAC,GAAc,EAAE,iBAAwB;IACzE,MAAM,EAAE,GAAG,UAAU,CAAC,SAAS,CAAC,GAAG,CAAC,CAAC;IACrC,MAAM,YAAY,GAAG,qBAAqB,CAAC,iBAAiB,CAAC,CAAC;IAC9D,MAAM,QAAQ,GAAG,EAAE,CAAC;IACpB,MAAM,QAAQ,GAAG,GAAG,CAAC,MAAM,CAAC;IAC5B,KAAK,IAAI,MAAM,GAAG,CAAC,EAAE,MAAM,GAAG,QAAQ,EAAE,EAAE,MAAM,EAAE,CAAC;QACjD,MAAM,QAAQ,GAAG,EAAE,CAAC,WAAW,CAAC,MAAM,CAAC,CAAC;QACxC,MAAM,cAAc,GAAG,EAAE,CAAC;QAC1B,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,QAAQ,CAAC,MAAM,EAAE,EAAE,CAAC,EAAE,CAAC;YACzC,MAAM,EAAE,GAAG,QAAQ,CAAC,YAAY,CAAC,CAAC,CAAC,CAAC;YACpC,IAAI,EAAE,EAAE,CAAC;gBACP,IAAI,CAAC,YAAY,CAAC,EAAE,CAAC,EAAE,CAAC;oBACtB,IAAI,CAAC,KAAK,CAAC,OAAO,CAAC,WAAW,EAAE,0DAA0D,CAAC,CAAC;oBAC5F,OAAO,IAAI,CAAC;gBACd,CAAC;gBACD,2CAA2C;gBAC3C,cAAc,CAAC,IAAI,CAAC,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,SAAS,CAAC,YAAY,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC;YACpE,CAAC;QACH,CAAC;QACD,QAAQ,CAAC,IAAI,CAAC,cAAc,CAAC,CAAC;IAChC,CAAC;IACD,OAAO,QAAQ,CAAC;AAClB,CAAC;AAED,MAAM,UAAU,wBAAwB,CAAC,IAAa,EAAE,iBAAwB;IAC9E,MAAM,EAAE,GAAG,UAAU,CAAC,SAAS,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC;IAC7C,MAAM,YAAY,GAAG,qBAAqB,CAAC,iBAAiB,CAAC,CAAC;IAC9D,MAAM,QAAQ,GAAG,EAAE,CAAC;IACpB,MAAM,QAAQ,GAAG,EAAE,CAAC,WAAW,CAAC,IAAI,CAAC,QAAQ,CAAC,CAAC;IAC/C,MAAM,cAAc,GAAG,EAAE,CAAC;IAC1B,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,QAAQ,CAAC,MAAM,EAAE,EAAE,CAAC,EAAE,CAAC;QACzC,MAAM,EAAE,GAAG,QAAQ,CAAC,YAAY,CAAC,CAAC,CAAC,CAAC;QACpC,IAAI,EAAE,EAAE,CAAC;YACP,IAAI,CAAC,YAAY,CAAC,EAAE,CAAC,EAAE,CAAC;gBACtB,IAAI,CAAC,KAAK,CAAC,OAAO,CAAC,WAAW,EAAE,0DAA0D,CAAC,CAAC;gBAC5F,OAAO,IAAI,CAAC;YACd,CAAC;YACD,cAAc,CAAC,IAAI,CAAC,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,SAAS,CAAC,YAAY,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC;QACpE,CAAC;IACH,CAAC;IACD,QAAQ,CAAC,IAAI,CAAC,cAAc,CAAC,CAAC;IAC9B,OAAO,QAAQ,CAAC;AAClB,CAAC;AAED,MAAM,UAAU,qBAAqB,CAAC,GAAU;IAC9C,MAAM,IAAI,GAAoC,EAAE,CAAC;IACjD,GAAG,CAAC,OAAO,CAAC,CAAC,EAAE,EAAE,EAAE;QACjB,IAAI,EAAE,CAAC,aAAa,CAAC,KAAK,SAAS,EAAE,CAAC;YACpC,MAAM,aAAa,GAA2B,EAAE,CAAC;YACjD,gBAAgB,CAAC,OAAO,CAAC,CAAC,KAAK,EAAE,EAAE;gBACjC,aAAa,CAAC,KAAK,CAAC,GAAG,EAAE,CAAC,KAAK,CAAC,CAAC;YACnC,CAAC,CAAC,CAAC;YACH,IAAI,CAAC,EAAE,mCAAoB,CAAC,GAAG,aAAa,CAAC;QAC/C,CAAC;IACH,CAAC,CAAC,CAAC;IACH,OAAO,IAAI,CAAC;AACd,CAAC;AAGD,MAAM,UAAU,2BAA2B,CAAC,KAAmB;;IAC7D,MAAM,SAAS,GAAG,EAAE,CAAC;IACrB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,KAAK,CAAC,QAAQ,EAAE,CAAC,EAAE,EAAE,CAAC;QACxC,MAAM,OAAO,GAAoC,EAAE,CAAC;QACpD,MAAM,CAAC,IAAI,CAAC,qBAAqB,CAAC,CAAC,OAAO,CAAC,CAAC,GAAG,EAAE,EAAE;YACjD,IAAI,GAAG,sCAAuB,EAAE,CAAC;gBAC/B,MAAM,aAAa,GAAG,KAAK,CAAC,GAAG,CAAC,qBAAqB,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC,CAAC;gBAC/D,OAAO,CAAC,GAAG,CAAC,GAAG,aAAa,KAAK,GAAG,CAAC,CAAC,CAAC,KAAK,CAAC,GAAG,CAAC,gBAAgB,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,aAAa,CAAC;YACxF,CAAC;iBAAM,IAAI,GAAG,wCAAwB,EAAE,CAAC;gBACvC,MAAM,OAAO,GAAG,KAAK,CAAC,GAAG,CAAC,qBAAqB,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC;gBACrE,MAAM,WAAW,GAAU,EAAE,CAAC;gBAC9B,OAAO,CAAC,OAAO,CAAC,CAAC,CAAS,EAAE,EAAE;oBAC5B,MAAM,MAAM,GAAoC,EAAE,CAAC;oBACnD,MAAM,OAAO,GAAG,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,WAAW,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,CAAC;oBACpD,MAAM,UAAU,GAAG,CAAC,CAAC,KAAK,CAAC,YAAY,CAAE,CAAC,CAAC,CAAC,CAAC;oBAC7C,MAAM,4DAAqC,GAAG,OAAO,KAAK,GAAG,CAAC,CAAC,CAAC,MAAM,UAAU,MAAM,CAAC,CAAC,CAAC,OAAO,UAAU,GAAG,CAAC;oBAC9G,MAAM,qDAAiC,GAAG,OAAO,KAAK,GAAG,CAAC,CAAC,CAAC,IAAI,UAAU,IAAI,CAAC,CAAC,CAAC,IAAI,UAAU,KAAK,CAAC;oBACrG,MAAM,wDAAmC,GAAG,OAAO,KAAK,GAAG,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,IAAI,CAAC;oBACzE,MAAM,wCAA0B,GAAG,IAAI,UAAU,EAAE,CAAC;oBACpD,WAAW,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC;gBAC3B,CAAC,CAAC,CAAC;gBACH,OAAO,CAAC,GAAG,CAAC,GAAG,WAAW,CAAC;YAC7B,CAAC;iBAAM,CAAC;gBACN,IAAK,qBAAyD,CAAC,GAAG,CAAC;oBACjE,OAAO,CAAC,GAAG,CAAC,GAAG,KAAK,CAAC,GAAG,CAAE,qBAAyD,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC,CAAC;YACjG,CAAC;QACH,CAAC,CAAC,CAAC;QACH,OAAO,qDAAP,OAAO,OAAiC,EAAE,EAAC;QAC3C,OAAO,6CAAP,OAAO,OAA6B,CAAC,EAAC;QACtC,OAAO,qDAAP,OAAO,OAAiC,EAAE,EAAC;QAC3C,OAAO,gEAAP,OAAO,OAAuC,UAAU,EAAC;QACzD,OAAO,8DAAP,OAAO,OAAsC,IAAI,EAAC;QAElD,SAAS,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC;IAC1B,CAAC;IACD,OAAO,SAAS,CAAC;AACnB,CAAC;AAwDD,MAAM,CAAC,KAAK,UAAU,mBAAmB;IACvC,MAAM,QAAQ,GAAG,EAAE,CAAC,IAAI,CAAC,IAAI,CAAC,EAAC,OAAO,EAAE,KAAK,EAAE,IAAI,EAAE,qBAAqB,EAAC,CAAC,CAAC;IAC7E,IAAI,QAAQ,CAAC,MAAM,KAAK,CAAC;QACvB,MAAM,IAAI,KAAK,CAAC,uDAAuD,CAAC,CAAC;IAE3E,MAAM,GAAG,GAAsB,CAAC,MAAM,QAAQ,CAAC,CAAC,CAAC,CAAC,OAAO,EAAE,CAAC,IAAI,EAAE,CAAC,CAAC,mBAAmB,EAAuB,CAAC;IAC/G,OAAO,GAAG,CAAC;AACb,CAAC;AAYD,MAAM,CAAC,KAAK,UAAU,sBAAsB,CAC1C,eAAwD,EAAE,iBAA+B;IAEzF,2BAA2B;IAC3B,IAAI,eAAe,YAAY,EAAE,CAAC,MAAM;QACtC,eAAe,GAAG,qBAAqB,CAAC,eAAe,CAAC,CAAC,OAAO,CAAC,MAAM,EAAE,CAAC;IAE5E,MAAM,SAAS,GAAG,MAAM,mBAAmB,EAAE,CAAC;IAC9C,MAAM,UAAU,GAAG,SAAS,CAAC,aAAa,EAAE,CAAC;IAC7C,yEAAyE;IACzE,MAAM,OAAO,GAAsE,IAAI,KAAK,CAAC,eAAe,CAAC,MAAM,CAAC,CAAC;IACrH,MAAM,QAAQ,GAAG,eAAe,CAAC,CAAC,CAAC,CAAC,MAAM,CAAC;IAC3C,MAAM,eAAe,GAAG,IAAI,YAAY,CAAC,QAAQ,CAAC,CAAC;IAEnD,4BAA4B;IAC5B,KAAK,IAAI,QAAQ,GAAG,CAAC,EAAE,QAAQ,GAAG,eAAe,CAAC,MAAM,EAAE,EAAE,QAAQ,EAAE,CAAC;QACrE,MAAM,yBAAyB,GAAG,QAAQ,GAAG,iBAAiB,CAAC,MAAM,CAAC,CAAC;YACrE,iBAAiB,CAAC,YAAY,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,UAAU,CAAC;QACxD,MAAM,YAAY,GAAG,UAAU,CAAC,UAAU,CAAC,SAAS,EAAE,yBAAyB,CAAC,EAAE,MAAM,IAAI,EAAE,CAAC;QAE/F,MAAM,UAAU,GAAG,eAAe,CAAC,QAAQ,CAAC,CAAC;QAC7C,MAAM,cAAc,GAAG,UAAU,CAAC,UAAU,EAAiB,CAAC;QAC9D,MAAM,oBAAoB,GAAG,UAAU,CAAC,UAAU,CAAC;QACnD,MAAM,gBAAgB,GAAG,oBAAoB,CAAC,OAAO,CAAC,EAAE,CAAC,CAAC;QAC1D,OAAO,CAAC,QAAQ,CAAC,GAAG,EAAC,UAAU,EAAE,oBAAoB,EAAE,IAAI,EAAE,cAAc,EAAE,UAAU,EAAE,gBAAgB,EAAC,CAAC;QAC3G,IAAI,OAAO,yBAAyB,KAAK,WAAW;YAClD,SAAS;QAEX,6BAA6B;QAC7B,MAAM,MAAM,GAAG,EAAE,CAAC,MAAM,CAAC,WAAW,CAAC,QAAQ,EAC3C,oBAAoB,CAAC,GAAG,CAAC,CAAC,GAAG,EAAE,EAAE,CAAC,UAAU,CAAC,UAAU,CAAC,SAAS,EAAE,GAAG,CAAC,EAAE,MAAM,IAAI,EAAE,CAAC,CAAC,CAAC;QAC1F,MAAM,GAAG,GAAG,EAAE,CAAC,SAAS,CAAC,WAAW,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,sDAAsD;QACtG,MAAM,aAAa,GAA6B,CAAC,MAAM,IAAI,CAAC,IAAI,CAAC,eAAe,CAAC,MAAM,EAAE,YAAY,CAAC,CAAE,CAAC;QACzG,MAAM,iBAAiB,GAAwB,aAAa,CAAC,CAAC,CAAE,aAAa,CAAC,UAAU,EAAmB,CAAC,CAAC,CAAC,IAAI,CAAC;QAEnH,KAAK,IAAI,MAAM,GAAG,CAAC,EAAE,MAAM,GAAG,QAAQ,EAAE,EAAE,MAAM,EAAE,CAAC;YACjD,MAAM,kBAAkB,GAAG,cAAc,CAAC,MAAM,CAAC,CAAC;YAClD,IAAI,yBAAyB,KAAK,UAAU,IAAI,kBAAkB,KAAK,gBAAgB,EAAE,CAAC;gBACxF,eAAe,CAAC,MAAM,CAAC,IAAI,iBAAkB,CAAC,kBAAkB,CAAC,CAAC;YACpE,CAAC;iBAAM,IAAI,yBAAyB,KAAK,UAAU,IAAI,kBAAkB,KAAK,gBAAgB,EAAE,CAAC;gBAC/F,eAAe,CAAC,MAAM,CAAC,IAAI,CAAC,CAAC;YAC/B,CAAC,CAAC,iEAAiE;QACrE,CAAC;IACH,CAAC;IAED,KAAK,IAAI,eAAe,GAAG,CAAC,EAAE,eAAe,GAAG,eAAe,CAAC,MAAM,EAAE,EAAE,eAAe,EAAE,CAAC;QAC1F,IAAI,iBAAiB,GAAG,eAAe,CAAC,eAAe,CAAC,GAAG,iBAAiB,CAAC,MAAM,CAAC;QACpF,KAAK,IAAI,QAAQ,GAAG,CAAC,EAAE,QAAQ,GAAG,eAAe,CAAC,MAAM,EAAE,EAAE,QAAQ,EAAE,CAAC;YACrE,MAAM,aAAa,GAAG,OAAO,CAAC,QAAQ,CAAC,CAAC;YACxC,IAAI,CAAC,QAAQ,IAAI,iBAAiB,CAAC,MAAM,IAAI,aAAa,CAAC,IAAI,CAAC,eAAe,CAAC,KAAK,aAAa,CAAC,UAAU,CAAC;gBAC5G,CAAC,aAAa,CAAC,IAAI,CAAC,eAAe,CAAC,KAAK,aAAa,CAAC,UAAU,IAAI,QAAQ,GAAG,iBAAiB,CAAC,MAAM,CAAC,EAAE,CAAC;gBAC5G,iBAAiB,GAAG,EAAE,CAAC,UAAU,CAAC;gBAClC,MAAM;YACR,CAAC;QACH,CAAC;QACD,eAAe,CAAC,eAAe,CAAC,GAAG,iBAAiB,CAAC;IACvD,CAAC;IAED,MAAM,aAAa,GAAG,EAAE,CAAC,MAAM,CAAC,gBAAgB,CAAC,YAAY,EAAE,eAAe,CAAC,CAAC;IAChF,OAAO,aAAa,CAAC;AACvB,CAAC;AAED,4BAA4B;AAC5B;;+KAE+K;AAC/K,MAAM,CAAC,KAAK,UAAU,0BAA0B,CAAC,UAAoB;IAEnE,2BAA2B;IAC3B,MAAM,SAAS,GAAG,MAAM,mBAAmB,EAAE,CAAC;IAC9C,MAAM,UAAU,GAAG,SAAS,CAAC,aAAa,EAAE,CAAC;IAC7C,MAAM,aAAa,GAAe,EAAE,CAAC;IACrC,MAAM,eAAe,GAA6B,EAAE,CAAC;IACrD,MAAM,gBAAgB,GAAG,UAAU,CAAC,GAAG,CAAC,CAAC,OAAO,EAAE,EAAE,CAAC,UAAU,CAAC,UAAU,CAAC,SAAS,EAAE,OAAO,CAAC,EAAE,MAAM,IAAI,EAAE,CAAC,CAAC;IAC9G,MAAM,mBAAmB,GAAG,EAAE,CAAC,MAAM,CAAC,WAAW,CAAC,QAAQ,EAAE,gBAAgB,CAAC,CAAC;IAE9E,KAAK,IAAI,YAAY,GAAG,CAAC,EAAE,YAAY,GAAG,gBAAgB,CAAC,MAAM,EAAE,EAAE,YAAY,EAAE,CAAC;QAClF,MAAM,OAAO,GAAG,UAAU,CAAC,YAAY,CAAC,CAAC;QACzC,eAAe,CAAC,OAAO,CAAC,GAAG,YAAY,CAAC;QACxC,MAAM,UAAU,GAAG,gBAAgB,CAAC,YAAY,CAAC,CAAC;QAClD,MAAM,gBAAgB,GAAG,UAAU,KAAK,EAAE,CAAC,CAAC,CAAC,IAAI,KAAK,CAAC,gBAAgB,CAAC,MAAM,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC;YACvF,CAAC,MAAM,IAAI,CAAC,IAAI,CAAC,eAAe,CAAC,mBAAmB,EAAE,UAAU,CAAC,CAAE,CAAC,UAAU,EAAE,CAAC;QACnF,gBAAgB,CAAC,YAAY,CAAC,GAAG,CAAC,CAAC;QAEnC,aAAa,CAAC,YAAY,CAAC,GAAG,KAAK,CAAC,IAAI,CAAC,gBAAgB,CAAC,CAAC;IAC7D,CAAC;IAED,OAAO,EAAC,aAAa,EAAE,eAAe,EAAC,CAAC;AAC1C,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,4BAA4B,CAAC,UAAoB,EAAE,kBAA0B,QAAQ;IAEzG,MAAM,SAAS,GAAG,MAAM,mBAAmB,EAAE,CAAC;IAC9C,MAAM,UAAU,GAAG,SAAS,CAAC,aAAa,EAAE,CAAC;IAC7C,MAAM,aAAa,GACjB,IAAI,KAAK,CAAC,UAAU,CAAC,MAAM,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,GAAG,EAAE,CAAC,IAAI,KAAK,CAAC,UAAU,CAAC,MAAM,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC;IACvF,MAAM,eAAe,GAA6B,EAAE,CAAC;IACrD,mHAAmH;IACnH,MAAM,gBAAgB,GAAG,UAAU,CAAC,GAAG,CAAC,CAAC,OAAO,EAAE,EAAE,CAAC,UAAU,CAAC,UAAU,CAAC,SAAS,EAAE,OAAO,CAAC,EAAE,OAAO,IAAI,UAAU,CAAC,UAAU,CAAC,SAAS,EAAE,OAAO,CAAC,EAAE,MAAM,IAAI,EAAE,CAAC,CAAC;IACpK,MAAM,gBAAgB,GAAG,EAAE,CAAC,IAAI,CAAC,IAAI,CAAC,EAAC,OAAO,EAAE,MAAM,EAAE,IAAI,EAAE,iBAAiB,EAAC,CAAC,CAAC,CAAC,CAAC,CAAC;IACrF,IAAI,CAAC,gBAAgB,EAAE,CAAC;QACtB,OAAO,CAAC,IAAI,CAAC,mGAAmG,CAAC,CAAC;QAClH,OAAO,MAAM,0BAA0B,CAAC,UAAU,CAAC,CAAC;IACtD,CAAC;IACD,MAAM,mBAAmB,GAAG,EAAE,CAAC,MAAM,CAAC,WAAW,CAAC,QAAQ,EAAE,gBAAgB,CAAC,CAAC;IAC9E,8BAA8B;IAC9B,MAAM,YAAY,GAAG,EAAE,CAAC,SAAS,CAAC,WAAW,CAAC,CAAC,mBAAmB,CAAC,CAAC,CAAC;IACrE,MAAM,YAAY,GAChB,CAAC,MAAM,gBAAgB,CAAC,KAAK,CAAC,EAAC,GAAG,EAAE,mBAAmB,EAAE,eAAe,EAAE,eAAe,EAAC,CAAC,CAAC,EAAE,OAAQ,CAAC;IACzG,IAAI,CAAC,YAAY,EAAE,CAAC;QAClB,OAAO,CAAC,IAAI,CAAC,GAAG,eAAe;0CACO,CAAC,CAAC;QACxC,OAAO,MAAM,0BAA0B,CAAC,UAAU,CAAC,CAAC;IACtD,CAAC;IAED,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,YAAY,CAAC,MAAM,EAAE,EAAE,CAAC,EAAE,CAAC;QAC7C,aAAa,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC;QACxB,eAAe,CAAC,UAAU,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC;QACnC,IAAI,CAAC,YAAY,CAAC,CAAC,CAAC;YAClB,SAAS;QACX,KAAK,IAAI,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,YAAY,CAAC,MAAM,EAAE,EAAE,CAAC,EAAE,CAAC;YACjD,IAAI,CAAC,YAAY,CAAC,CAAC,CAAC;gBAClB,SAAS;YACX,aAAa;YACb,aAAa,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,aAAa,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,kBAAkB,CAAC,YAAY,CAAC,CAAC,CAAE,EAAE,YAAY,CAAC,CAAC,CAAE,CAAC,CAAC;QACrG,CAAC;IACH,CAAC;IACD,OAAO,EAAC,aAAa,EAAE,eAAe,EAAC,CAAC;AAC1C,CAAC;AAAA,CAAC"}

package/src/monomer-works/seq-to-molfile-worker.js

@@ -1,12 +1,12 @@
 import { monomerSeqToMolfile } from './to-atomic-level-utils';
 onmessage = (event) => {
-    const { monomerSequencesArray, monomersDict, alphabet, polymerType, start, end } = event.data;
-    const molfileList = new Array(end - start);
+    const { seqList, monomersDict, alphabet, polymerType, start, end } = event.data;
+    const resMolList = new Array(end - start);
     const molfileWarningList = new Array(0);
     for (let rowI = start; rowI < end; ++rowI) {
         try {
-            const monomerSeq = monomerSequencesArray[rowI];
-            molfileList[rowI - start] = monomerSeqToMolfile(monomerSeq, monomersDict, alphabet, polymerType);
+            const seq = seqList[rowI];
+            resMolList[rowI - start] = monomerSeqToMolfile(seq, monomersDict, alphabet, polymerType);
         }
         catch (err) {
             const errMsg = err instanceof Error ? err.message : err.toString();
@@ -14,6 +14,6 @@ onmessage = (event) => {
             molfileWarningList.push(msg);
         }
     }
-    postMessage({ molfileList, molfileWarningList });
+    postMessage({ molfiles: resMolList, warnings: molfileWarningList });
 };
 //# sourceMappingURL=seq-to-molfile-worker.js.map

package/src/monomer-works/seq-to-molfile-worker.js.map

@@ -1 +1 @@
-{"version":3,"file":"seq-to-molfile-worker.js","sourceRoot":"","sources":["seq-to-molfile-worker.ts"],"names":[],"mappings":"AAAA,OAAO,EAAC,mBAAmB,EAAC,MAAM,yBAAyB,CAAC;AAC5D,SAAS,GAAG,CAAC,KAAK,EAAE,EAAE;IACpB,MAAM,EAAC,qBAAqB,EAAE,YAAY,EAAE,QAAQ,EAAE,WAAW,EAAE,KAAK,EAAE,GAAG,EAAC,GAAG,KAAK,CAAC,IAAI,CAAC;IAC5F,MAAM,WAAW,GAAa,IAAI,KAAK,CAAS,GAAG,GAAG,KAAK,CAAC,CAAC;IAC7D,MAAM,kBAAkB,GAAG,IAAI,KAAK,CAAS,CAAC,CAAC,CAAC;IAChD,KAAK,IAAI,IAAI,GAAG,KAAK,EAAE,IAAI,GAAG,GAAG,EAAE,EAAE,IAAI,EAAE,CAAC;QAC1C,IAAI,CAAC;YACH,MAAM,UAAU,GAAG,qBAAqB,CAAC,IAAI,CAAC,CAAC;YAC/C,WAAW,CAAC,IAAI,GAAG,KAAK,CAAC,GAAG,mBAAmB,CAAC,UAAU,EAAE,YAAY,EAAE,QAAQ,EAAE,WAAW,CAAC,CAAC;QACnG,CAAC;QAAC,OAAO,GAAQ,EAAE,CAAC;YAClB,MAAM,MAAM,GAAW,GAAG,YAAY,KAAK,CAAC,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC,CAAC,GAAG,CAAC,QAAQ,EAAE,CAAC;YAC3E,MAAM,GAAG,GAAW,8BAA8B,IAAI,KAAK,MAAM,GAAG,CAAC;YACrE,kBAAkB,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;QAC/B,CAAC;IACH,CAAC;IACD,WAAW,CAAC,EAAC,WAAW,EAAE,kBAAkB,EAAC,CAAC,CAAC;AACjD,CAAC,CAAC"}
+{"version":3,"file":"seq-to-molfile-worker.js","sourceRoot":"","sources":["seq-to-molfile-worker.ts"],"names":[],"mappings":"AAAA,OAAO,EAAC,mBAAmB,EAAC,MAAM,yBAAyB,CAAC;AAG5D,SAAS,GAAG,CAAC,KAAK,EAAE,EAAE;IACpB,MAAM,EAAC,OAAO,EAAE,YAAY,EAAE,QAAQ,EAAE,WAAW,EAAE,KAAK,EAAE,GAAG,EAAC,GAA2B,KAAK,CAAC,IAAI,CAAC;IACtG,MAAM,UAAU,GAAqB,IAAI,KAAK,CAAiB,GAAG,GAAG,KAAK,CAAC,CAAC;IAC5E,MAAM,kBAAkB,GAAG,IAAI,KAAK,CAAS,CAAC,CAAC,CAAC;IAChD,KAAK,IAAI,IAAI,GAAG,KAAK,EAAE,IAAI,GAAG,GAAG,EAAE,EAAE,IAAI,EAAE,CAAC;QAC1C,IAAI,CAAC;YACH,MAAM,GAAG,GAAG,OAAO,CAAC,IAAI,CAAC,CAAC;YAC1B,UAAU,CAAC,IAAI,GAAG,KAAK,CAAC,GAAG,mBAAmB,CAAC,GAAG,EAAE,YAAY,EAAE,QAAQ,EAAE,WAAW,CAAC,CAAC;QAC3F,CAAC;QAAC,OAAO,GAAQ,EAAE,CAAC;YAClB,MAAM,MAAM,GAAW,GAAG,YAAY,KAAK,CAAC,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC,CAAC,GAAG,CAAC,QAAQ,EAAE,CAAC;YAC3E,MAAM,GAAG,GAAW,8BAA8B,IAAI,KAAK,MAAM,GAAG,CAAC;YACrE,kBAAkB,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;QAC/B,CAAC;IACH,CAAC;IACD,WAAW,CAAC,EAAC,QAAQ,EAAE,UAAU,EAAE,QAAQ,EAAE,kBAAkB,EAA0B,CAAC,CAAC;AAC7F,CAAC,CAAC"}

package/src/monomer-works/seq-to-molfile.d.ts

@@ -1,9 +1,18 @@
-import { HELM_POLYMER_TYPE } from '../utils/const';
+import * as DG from 'datagrok-api/dg';
+import { RDModule } from '@datagrok-libraries/chem-meta/src/rdkit-api';
 import { ALPHABET } from '../utils/macromolecule';
-import { MolGraph } from './types';
+import { MonomerMap, MonomerMapValue, MonomerMolGraphMap } from './types';
+import { ToAtomicLevelRes } from '../utils/seq-helper';
+import { IMonomerLib } from '../types';
+import { PolymerType } from '../helm/types';
+import { ISubstruct } from '@datagrok-libraries/chem-meta/src/types';
 export type SeqToMolfileResult = {
-    molfileWarningList: string[];
-    molfileList: string[];
+    mols: {
+        molfile: string;
+        monomers: MonomerMap;
+    }[];
+    warnings: string[];
 };
-export declare function seqToMolFileWorker(monomerSequencesArray: string[][], monomersDict: Map<string, MolGraph>, alphabet: ALPHABET, polymerType: HELM_POLYMER_TYPE, srcColLength: number): Promise<SeqToMolfileResult>;
+export declare function seqToMolFileWorker(seqCol: DG.Column<string>, monomersDict: MonomerMolGraphMap, alphabet: ALPHABET, polymerType: PolymerType, monomerLib: IMonomerLib, rdKitModule: RDModule): Promise<ToAtomicLevelRes>;
+export declare function getMolHighlight(monomerMaps: Iterable<MonomerMapValue>, monomerLib: IMonomerLib): ISubstruct;
 //# sourceMappingURL=seq-to-molfile.d.ts.map

package/src/monomer-works/seq-to-molfile.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"seq-to-molfile.d.ts","sourceRoot":"","sources":["seq-to-molfile.ts"],"names":[],"mappings":"AAAA,OAAO,EAAC,iBAAiB,EAAC,MAAM,gBAAgB,CAAC;AACjD,OAAO,EAAC,QAAQ,EAAC,MAAM,wBAAwB,CAAC;AAChD,OAAO,EAAC,QAAQ,EAAC,MAAM,SAAS,CAAC;AAEjC,MAAM,MAAM,kBAAkB,GAAG;IAC7B,kBAAkB,EAAE,MAAM,EAAE,CAAA;IAC5B,WAAW,EAAE,MAAM,EAAE,CAAA;CACxB,CAAA;AAED,wBAAsB,kBAAkB,CAAC,qBAAqB,EAAE,MAAM,EAAE,EAAE,EAAE,YAAY,EAAE,GAAG,CAAC,MAAM,EAAE,QAAQ,CAAC,EAC7G,QAAQ,EAAE,QAAQ,EAAE,WAAW,EAAE,iBAAiB,EAAE,YAAY,EAAE,MAAM,GACvE,OAAO,CAAC,kBAAkB,CAAC,CA+B7B"}
+{"version":3,"file":"seq-to-molfile.d.ts","sourceRoot":"","sources":["seq-to-molfile.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAItC,OAAO,EAAC,QAAQ,EAAC,MAAM,6CAA6C,CAAC;AAGrE,OAAO,EAAC,QAAQ,EAAC,MAAM,wBAAwB,CAAC;AAChD,OAAO,EACqB,UAAU,EAAE,eAAe,EAAE,kBAAkB,EAC1E,MAAM,SAAS,CAAC;AACjB,OAAO,EAAC,gBAAgB,EAAC,MAAM,qBAAqB,CAAC;AAGrD,OAAO,EAAC,WAAW,EAAC,MAAM,UAAU,CAAC;AACrC,OAAO,EAAc,WAAW,EAAC,MAAM,eAAe,CAAC;AAEvD,OAAO,EAAC,UAAU,EAAC,MAAM,yCAAyC,CAAC;AAGnE,MAAM,MAAM,kBAAkB,GAAG;IAC/B,IAAI,EAAE;QACJ,OAAO,EAAE,MAAM,CAAC;QAChB,QAAQ,EAAE,UAAU,CAAA;KACrB,EAAE,CAAC;IACJ,QAAQ,EAAE,MAAM,EAAE,CAAA;CACnB,CAAA;AAED,wBAAsB,kBAAkB,CAAC,MAAM,EAAE,EAAE,CAAC,MAAM,CAAC,MAAM,CAAC,EAAE,YAAY,EAAE,kBAAkB,EAClG,QAAQ,EAAE,QAAQ,EAAE,WAAW,EAAE,WAAW,EAAE,UAAU,EAAE,WAAW,EAAE,WAAW,EAAE,QAAQ,GAC3F,OAAO,CAAC,gBAAgB,CAAC,CAoD3B;AAED,wBAAgB,eAAe,CAAC,WAAW,EAAE,QAAQ,CAAC,eAAe,CAAC,EAAE,UAAU,EAAE,WAAW,GAAG,UAAU,CAsB3G"}