@datagrok-libraries/bio 5.42.9 → 5.42.10

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
package/CHANGELOG.md CHANGED
@@ -1,6 +1,12 @@
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  # bio changelog
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- ## 5.42.9
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+ ## 5.42.10 (2024-08-23)
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+
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+ ### Features
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+
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+ * Add SeqHandler
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+
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+ ## 5.42.9 (2024-08-16)
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  ### Features
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package/package.json CHANGED
@@ -8,9 +8,10 @@
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  "access": "public"
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  },
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  "friendlyName": "Datagrok bio library",
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- "version": "5.42.9",
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+ "version": "5.42.10",
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  "description": "Bio utilities, types supporting Macromolecule, Molecule3D data",
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  "dependencies": {
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+ "@datagrok-libraries/chem-meta": "^1.2.5",
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  "@datagrok-libraries/gridext": "^1.3.71",
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  "@datagrok-libraries/ml": "^6.6.11",
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  "@datagrok-libraries/utils": "^4.2.11",
@@ -26,8 +27,8 @@
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  "wu": "latest"
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  },
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  "devDependencies": {
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- "@datagrok-libraries/helm-web-editor": "^1.1.8",
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- "@datagrok-libraries/js-draw-lite": "^0.0.6",
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+ "@datagrok-libraries/helm-web-editor": "^1.1.9",
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+ "@datagrok-libraries/js-draw-lite": "^0.0.7",
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  "@types/signals": "1.0.1",
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  "@types/three": "^0.159.0",
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  "@types/uuid": "^9.0.1",
@@ -0,0 +1,3 @@
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+ import { RDModule } from '@datagrok-libraries/chem-meta/src/rdkit-api';
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+ export declare function getRdKitModule(): Promise<RDModule>;
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+ //# sourceMappingURL=rdkit-module.d.ts.map
@@ -0,0 +1 @@
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+ {"version":3,"file":"rdkit-module.d.ts","sourceRoot":"","sources":["rdkit-module.ts"],"names":[],"mappings":"AAIA,OAAO,EAAC,QAAQ,EAAC,MAAM,6CAA6C,CAAC;AAErE,wBAAsB,cAAc,IAAI,OAAO,CAAC,QAAQ,CAAC,CAOxD"}
@@ -0,0 +1,9 @@
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+ import * as DG from 'datagrok-api/dg';
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+ export async function getRdKitModule() {
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+ const funcList = DG.Func.find({ package: 'Chem', name: 'getRdKitModule' });
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+ if (funcList.length === 0)
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+ throw new Error('Package "Chem" must be installed for getRdKitModule.');
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+ const res = (await funcList[0].prepare().call()).getOutputParamValue();
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+ return res;
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+ }
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+ //# sourceMappingURL=rdkit-module.js.map
@@ -0,0 +1 @@
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+ {"version":3,"file":"rdkit-module.js","sourceRoot":"","sources":["rdkit-module.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAItC,MAAM,CAAC,KAAK,UAAU,cAAc;IAClC,MAAM,QAAQ,GAAG,EAAE,CAAC,IAAI,CAAC,IAAI,CAAC,EAAC,OAAO,EAAE,MAAM,EAAE,IAAI,EAAE,gBAAgB,EAAC,CAAC,CAAC;IACzE,IAAI,QAAQ,CAAC,MAAM,KAAK,CAAC;QACvB,MAAM,IAAI,KAAK,CAAC,sDAAsD,CAAC,CAAC;IAE1E,MAAM,GAAG,GAAa,CAAC,MAAM,QAAQ,CAAC,CAAC,CAAC,CAAC,OAAO,EAAE,CAAC,IAAI,EAAE,CAAC,CAAC,mBAAmB,EAAc,CAAC;IAC7F,OAAO,GAAG,CAAC;AACb,CAAC"}
@@ -24,6 +24,8 @@ export interface IHelmHelper {
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  overrideMonomersFuncs(monomersFuncs: MonomersFuncs): MonomersFuncs;
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  revertOriginalMonomersFuncs(): MonomersFuncs;
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  getHoveredAtom(x: number, y: number, mol: HelmMol, height: number): HelmAtom | null;
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+ /** Gets pseudo molfiles with monomers as atoms */
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+ getMolfiles(helmStrList: string[]): string[];
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  }
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  export declare function getHelmHelper(): Promise<IHelmHelper>;
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  declare module 'datagrok-api/ui' {
@@ -1 +1 @@
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- {"version":3,"file":"helm-helper.d.ts","sourceRoot":"","sources":["helm-helper.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AACtC,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAGtC,OAAO,KAAK,EAAC,GAAG,EAAC,MAAM,8CAA8C,CAAC;AACtE,OAAO,EACW,aAAa,EAAE,OAAO,EAAE,UAAU,EAAE,cAAc,EAAE,QAAQ,EAAE,gBAAgB,EAC/F,MAAM,SAAS,CAAC;AACjB,OAAO,EAAC,WAAW,EAAC,MAAM,gBAAgB,CAAC;AAC3C,OAAO,EAAC,UAAU,EAAC,MAAM,MAAM,CAAC;AAEhC,MAAM,MAAM,qBAAqB,GAAG,EAAE,CAAC,KAAK,CAAC,iBAAiB,CAAC,UAAU,GAAG,OAAO,CAAC,GAAG;IACrF,QAAQ,EAAE,OAAO,CAAC;CACnB,CAAC;AAEF,8BAAsB,aAAc,SAAQ,EAAE,CAAC,WAAW,CAAC,UAAU,CAAC;IACpE,QAAQ,KAAK,QAAQ,IAAI,OAAO,CAAC;IACjC,QAAQ,KAAK,QAAQ,CAAC,KAAK,EAAE,OAAO,EAAE;IAEtC,QAAQ,KAAK,WAAW,IAAI,UAAU,CAAC,UAAU,CAAC,CAAC;IAEnD,QAAQ,KAAK,OAAO,IAAI,UAAU,CAAC,UAAU,CAAC,CAAC;IAE/C,QAAQ,CAAC,MAAM,IAAI,IAAI;IAEvB,QAAQ,CAAC,WAAW,CAAC,OAAO,EAAE,WAAW,GAAG,MAAM,EAAE,CAAC,EAAE,QAAQ,GAAG,IAAI;CACvE;AAED,MAAM,WAAW,WAAW;IAC1B,eAAe,CAAC,IAAI,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,qBAAqB,GAAG,aAAa,CAAC;IAE9E,mBAAmB,CAAC,IAAI,CAAC,EAAE,WAAW,EAAE,WAAW,CAAC,EAAE,OAAO,CAAC,gBAAgB,CAAC,GAAG,cAAc,CAAC;IAEjG,kBAAkB,CAAC,IAAI,EAAE,cAAc,EAAE,IAAI,CAAC,EAAE,MAAM,GAAG,GAAG,CAAC;IAE7D,IAAI,qBAAqB,IAAI,aAAa,GAAG,IAAI,CAAC;IAElD,yBAAyB,CAAC,UAAU,EAAE,WAAW,GAAG,aAAa,CAAC;IAElE,qBAAqB,CAAC,aAAa,EAAE,aAAa,GAAG,aAAa,CAAC;IACnE,2BAA2B,IAAI,aAAa,CAAC;IAE7C,cAAc,CAAC,CAAC,EAAE,MAAM,EAAE,CAAC,EAAE,MAAM,EAAE,GAAG,EAAE,OAAO,EAAE,MAAM,EAAE,MAAM,GAAG,QAAQ,GAAG,IAAI,CAAC;CACrF;AAED,wBAAsB,aAAa,IAAI,OAAO,CAAC,WAAW,CAAC,CAO1D;AAED,OAAO,QAAQ,iBAAiB,CAAC;IAC/B,UAAiB,KAAK,CAAC;QACrB;;WAEG;QACH,SAAgB,SAAS,CAAC,IAAI,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,qBAAqB,GAAG,OAAO,CAAC,aAAa,CAAC,CAAC;KAClG;CACF"}
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+ {"version":3,"file":"helm-helper.d.ts","sourceRoot":"","sources":["helm-helper.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AACtC,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAGtC,OAAO,KAAK,EAAC,GAAG,EAAC,MAAM,8CAA8C,CAAC;AACtE,OAAO,EACW,aAAa,EAAE,OAAO,EAAE,UAAU,EAAE,cAAc,EAAE,QAAQ,EAAE,gBAAgB,EAC/F,MAAM,SAAS,CAAC;AACjB,OAAO,EAAC,WAAW,EAAC,MAAM,gBAAgB,CAAC;AAC3C,OAAO,EAAC,UAAU,EAAC,MAAM,MAAM,CAAC;AAEhC,MAAM,MAAM,qBAAqB,GAAG,EAAE,CAAC,KAAK,CAAC,iBAAiB,CAAC,UAAU,GAAG,OAAO,CAAC,GAAG;IACrF,QAAQ,EAAE,OAAO,CAAC;CACnB,CAAC;AAEF,8BAAsB,aAAc,SAAQ,EAAE,CAAC,WAAW,CAAC,UAAU,CAAC;IACpE,QAAQ,KAAK,QAAQ,IAAI,OAAO,CAAC;IACjC,QAAQ,KAAK,QAAQ,CAAC,KAAK,EAAE,OAAO,EAAE;IAEtC,QAAQ,KAAK,WAAW,IAAI,UAAU,CAAC,UAAU,CAAC,CAAC;IAEnD,QAAQ,KAAK,OAAO,IAAI,UAAU,CAAC,UAAU,CAAC,CAAC;IAE/C,QAAQ,CAAC,MAAM,IAAI,IAAI;IAEvB,QAAQ,CAAC,WAAW,CAAC,OAAO,EAAE,WAAW,GAAG,MAAM,EAAE,CAAC,EAAE,QAAQ,GAAG,IAAI;CACvE;AAED,MAAM,WAAW,WAAW;IAC1B,eAAe,CAAC,IAAI,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,qBAAqB,GAAG,aAAa,CAAC;IAE9E,mBAAmB,CAAC,IAAI,CAAC,EAAE,WAAW,EAAE,WAAW,CAAC,EAAE,OAAO,CAAC,gBAAgB,CAAC,GAAG,cAAc,CAAC;IAEjG,kBAAkB,CAAC,IAAI,EAAE,cAAc,EAAE,IAAI,CAAC,EAAE,MAAM,GAAG,GAAG,CAAC;IAE7D,IAAI,qBAAqB,IAAI,aAAa,GAAG,IAAI,CAAC;IAElD,yBAAyB,CAAC,UAAU,EAAE,WAAW,GAAG,aAAa,CAAC;IAElE,qBAAqB,CAAC,aAAa,EAAE,aAAa,GAAG,aAAa,CAAC;IACnE,2BAA2B,IAAI,aAAa,CAAC;IAE7C,cAAc,CAAC,CAAC,EAAE,MAAM,EAAE,CAAC,EAAE,MAAM,EAAE,GAAG,EAAE,OAAO,EAAE,MAAM,EAAE,MAAM,GAAG,QAAQ,GAAG,IAAI,CAAC;IAEpF,kDAAkD;IAClD,WAAW,CAAC,WAAW,EAAE,MAAM,EAAE,GAAG,MAAM,EAAE,CAAC;CAC9C;AAED,wBAAsB,aAAa,IAAI,OAAO,CAAC,WAAW,CAAC,CAO1D;AAED,OAAO,QAAQ,iBAAiB,CAAC;IAC/B,UAAiB,KAAK,CAAC;QACrB;;WAEG;QACH,SAAgB,SAAS,CAAC,IAAI,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,qBAAqB,GAAG,OAAO,CAAC,aAAa,CAAC,CAAC;KAClG;CACF"}
@@ -1 +1 @@
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- {"version":3,"file":"helm-helper.js","sourceRoot":"","sources":["helm-helper.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AACtC,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AActC,MAAM,OAAgB,aAAc,SAAQ,EAAE,CAAC,WAAuB;CAWrE;AAmBD,MAAM,CAAC,KAAK,UAAU,aAAa;IACjC,MAAM,WAAW,GAAG,MAAM,CAAC;IAC3B,MAAM,QAAQ,GAAG,EAAE,CAAC,IAAI,CAAC,IAAI,CAAC,EAAC,OAAO,EAAE,WAAW,EAAE,IAAI,EAAE,eAAe,EAAC,CAAC,CAAC;IAC7E,IAAI,QAAQ,CAAC,MAAM,KAAK,CAAC;QACvB,MAAM,IAAI,KAAK,CAAC,YAAY,WAAW,qCAAqC,CAAC,CAAC;IAChF,MAAM,GAAG,GAAG,CAAC,MAAM,QAAQ,CAAC,CAAC,CAAC,CAAC,OAAO,EAAE,CAAC,IAAI,EAAE,CAAC,CAAC,mBAAmB,EAAiB,CAAC;IACtF,OAAO,GAAG,CAAC;AACb,CAAC;AAWD,EAAE,CAAC,KAAK,CAAC,SAAS,GAAG,KAAK,WACxB,IAAY,EAAE,OAA+B;IAC7C,OAAO,CAAC,MAAM,aAAa,EAAE,CAAC,CAAC,eAAe,CAAC,IAAI,EAAE,OAAO,CAAC,CAAC;AAChE,CAAC,CAAC"}
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+ {"version":3,"file":"helm-helper.js","sourceRoot":"","sources":["helm-helper.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AACtC,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AActC,MAAM,OAAgB,aAAc,SAAQ,EAAE,CAAC,WAAuB;CAWrE;AAsBD,MAAM,CAAC,KAAK,UAAU,aAAa;IACjC,MAAM,WAAW,GAAG,MAAM,CAAC;IAC3B,MAAM,QAAQ,GAAG,EAAE,CAAC,IAAI,CAAC,IAAI,CAAC,EAAC,OAAO,EAAE,WAAW,EAAE,IAAI,EAAE,eAAe,EAAC,CAAC,CAAC;IAC7E,IAAI,QAAQ,CAAC,MAAM,KAAK,CAAC;QACvB,MAAM,IAAI,KAAK,CAAC,YAAY,WAAW,qCAAqC,CAAC,CAAC;IAChF,MAAM,GAAG,GAAG,CAAC,MAAM,QAAQ,CAAC,CAAC,CAAC,CAAC,OAAO,EAAE,CAAC,IAAI,EAAE,CAAC,CAAC,mBAAmB,EAAiB,CAAC;IACtF,OAAO,GAAG,CAAC;AACb,CAAC;AAWD,EAAE,CAAC,KAAK,CAAC,SAAS,GAAG,KAAK,WACxB,IAAY,EAAE,OAA+B;IAC7C,OAAO,CAAC,MAAM,aAAa,EAAE,CAAC,CAAC,eAAe,CAAC,IAAI,EAAE,OAAO,CAAC,CAAC;AAChE,CAAC,CAAC"}
@@ -7,7 +7,8 @@ export interface ILogger {
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  export declare class LoggerWrapper implements ILogger {
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  private readonly target;
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  private debugEnabled;
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- constructor(target: ILogger, debugEnabled: boolean);
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+ private prefix;
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+ constructor(target: ILogger, debugEnabled: boolean, prefix?: string);
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  error(message: any, params?: object | undefined, stackTrace?: string | undefined): void;
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  warning(message: string, params?: object | undefined): void;
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  info(message: string, params?: object | undefined): void;
@@ -1 +1 @@
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- {"version":3,"file":"logger.d.ts","sourceRoot":"","sources":["logger.ts"],"names":[],"mappings":"AAIA,MAAM,WAAW,OAAO;IACtB,KAAK,CAAC,OAAO,EAAE,GAAG,EAAE,MAAM,CAAC,EAAE,MAAM,GAAG,SAAS,EAAE,UAAU,CAAC,EAAE,MAAM,GAAG,SAAS,GAAG,IAAI,CAAC;IACxF,OAAO,CAAC,OAAO,EAAE,MAAM,EAAE,MAAM,CAAC,EAAE,MAAM,GAAG,SAAS,GAAG,IAAI,CAAC;IAC5D,IAAI,CAAC,OAAO,EAAE,MAAM,EAAE,MAAM,CAAC,EAAE,MAAM,GAAG,SAAS,GAAG,IAAI,CAAC;IACzD,KAAK,CAAC,OAAO,EAAE,MAAM,EAAE,MAAM,CAAC,EAAE,MAAM,GAAG,SAAS,GAAG,IAAI,CAAC;CAC3D;AAED,qBAAa,aAAc,YAAW,OAAO;IAEzC,OAAO,CAAC,QAAQ,CAAC,MAAM;IACvB,OAAO,CAAC,YAAY;gBADH,MAAM,EAAE,OAAO,EACxB,YAAY,EAAE,OAAO;IAG/B,KAAK,CAAC,OAAO,EAAE,GAAG,EAAE,MAAM,CAAC,EAAE,MAAM,GAAG,SAAS,EAAE,UAAU,CAAC,EAAE,MAAM,GAAG,SAAS,GAAG,IAAI;IAIvF,OAAO,CAAC,OAAO,EAAE,MAAM,EAAE,MAAM,CAAC,EAAE,MAAM,GAAG,SAAS,GAAG,IAAI;IAI3D,IAAI,CAAC,OAAO,EAAE,MAAM,EAAE,MAAM,CAAC,EAAE,MAAM,GAAG,SAAS,GAAG,IAAI;IAIxD,KAAK,CAAC,OAAO,EAAE,MAAM,EAAE,MAAM,CAAC,EAAE,MAAM,GAAG,SAAS,GAAG,IAAI;CAI1D"}
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+ {"version":3,"file":"logger.d.ts","sourceRoot":"","sources":["logger.ts"],"names":[],"mappings":"AAIA,MAAM,WAAW,OAAO;IACtB,KAAK,CAAC,OAAO,EAAE,GAAG,EAAE,MAAM,CAAC,EAAE,MAAM,GAAG,SAAS,EAAE,UAAU,CAAC,EAAE,MAAM,GAAG,SAAS,GAAG,IAAI,CAAC;IACxF,OAAO,CAAC,OAAO,EAAE,MAAM,EAAE,MAAM,CAAC,EAAE,MAAM,GAAG,SAAS,GAAG,IAAI,CAAC;IAC5D,IAAI,CAAC,OAAO,EAAE,MAAM,EAAE,MAAM,CAAC,EAAE,MAAM,GAAG,SAAS,GAAG,IAAI,CAAC;IACzD,KAAK,CAAC,OAAO,EAAE,MAAM,EAAE,MAAM,CAAC,EAAE,MAAM,GAAG,SAAS,GAAG,IAAI,CAAC;CAC3D;AAED,qBAAa,aAAc,YAAW,OAAO;IAEzC,OAAO,CAAC,QAAQ,CAAC,MAAM;IACvB,OAAO,CAAC,YAAY;IACpB,OAAO,CAAC,MAAM;gBAFG,MAAM,EAAE,OAAO,EACxB,YAAY,EAAE,OAAO,EACrB,MAAM,GAAE,MAAW;IAG7B,KAAK,CAAC,OAAO,EAAE,GAAG,EAAE,MAAM,CAAC,EAAE,MAAM,GAAG,SAAS,EAAE,UAAU,CAAC,EAAE,MAAM,GAAG,SAAS,GAAG,IAAI;IAIvF,OAAO,CAAC,OAAO,EAAE,MAAM,EAAE,MAAM,CAAC,EAAE,MAAM,GAAG,SAAS,GAAG,IAAI;IAI3D,IAAI,CAAC,OAAO,EAAE,MAAM,EAAE,MAAM,CAAC,EAAE,MAAM,GAAG,SAAS,GAAG,IAAI;IAIxD,KAAK,CAAC,OAAO,EAAE,MAAM,EAAE,MAAM,CAAC,EAAE,MAAM,GAAG,SAAS,GAAG,IAAI;CAI1D"}
@@ -1,20 +1,21 @@
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  export class LoggerWrapper {
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- constructor(target, debugEnabled) {
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+ constructor(target, debugEnabled, prefix = '') {
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  this.target = target;
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  this.debugEnabled = debugEnabled;
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+ this.prefix = prefix;
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  }
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  error(message, params, stackTrace) {
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- return this.target.error(message, params, stackTrace);
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+ return this.target.error(this.prefix + message, params, stackTrace);
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  }
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  warning(message, params) {
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- return this.target.warning(message, params);
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+ return this.target.warning(this.prefix + message, params);
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  }
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  info(message, params) {
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- return this.target.info(message, params);
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+ return this.target.info(this.prefix + message, params);
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  }
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  debug(message, params) {
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  if (this.debugEnabled)
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- return this.target.debug(message, params);
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+ return this.target.debug(this.prefix + message, params);
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  }
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  }
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  //# sourceMappingURL=logger.js.map
@@ -1 +1 @@
1
- {"version":3,"file":"logger.js","sourceRoot":"","sources":["logger.ts"],"names":[],"mappings":"AAWA,MAAM,OAAO,aAAa;IACxB,YACmB,MAAe,EACxB,YAAqB;QADZ,WAAM,GAAN,MAAM,CAAS;QACxB,iBAAY,GAAZ,YAAY,CAAS;IAC5B,CAAC;IAEJ,KAAK,CAAC,OAAY,EAAE,MAA2B,EAAE,UAA+B;QAC9E,OAAO,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,OAAO,EAAE,MAAM,EAAE,UAAU,CAAC,CAAC;IACxD,CAAC;IAED,OAAO,CAAC,OAAe,EAAE,MAA2B;QAClD,OAAO,IAAI,CAAC,MAAM,CAAC,OAAO,CAAC,OAAO,EAAE,MAAM,CAAC,CAAC;IAC9C,CAAC;IAED,IAAI,CAAC,OAAe,EAAE,MAA2B;QAC/C,OAAO,IAAI,CAAC,MAAM,CAAC,IAAI,CAAC,OAAO,EAAE,MAAM,CAAC,CAAC;IAC3C,CAAC;IAED,KAAK,CAAC,OAAe,EAAE,MAA2B;QAChD,IAAI,IAAI,CAAC,YAAY;YACnB,OAAO,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,OAAO,EAAE,MAAM,CAAC,CAAC;IAC9C,CAAC;CACF"}
1
+ {"version":3,"file":"logger.js","sourceRoot":"","sources":["logger.ts"],"names":[],"mappings":"AAWA,MAAM,OAAO,aAAa;IACxB,YACmB,MAAe,EACxB,YAAqB,EACrB,SAAiB,EAAE;QAFV,WAAM,GAAN,MAAM,CAAS;QACxB,iBAAY,GAAZ,YAAY,CAAS;QACrB,WAAM,GAAN,MAAM,CAAa;IAC1B,CAAC;IAEJ,KAAK,CAAC,OAAY,EAAE,MAA2B,EAAE,UAA+B;QAC9E,OAAO,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,IAAI,CAAC,MAAM,GAAG,OAAO,EAAE,MAAM,EAAE,UAAU,CAAC,CAAC;IACtE,CAAC;IAED,OAAO,CAAC,OAAe,EAAE,MAA2B;QAClD,OAAO,IAAI,CAAC,MAAM,CAAC,OAAO,CAAC,IAAI,CAAC,MAAM,GAAG,OAAO,EAAE,MAAM,CAAC,CAAC;IAC5D,CAAC;IAED,IAAI,CAAC,OAAe,EAAE,MAA2B;QAC/C,OAAO,IAAI,CAAC,MAAM,CAAC,IAAI,CAAC,IAAI,CAAC,MAAM,GAAG,OAAO,EAAE,MAAM,CAAC,CAAC;IACzD,CAAC;IAED,KAAK,CAAC,OAAe,EAAE,MAA2B;QAChD,IAAI,IAAI,CAAC,YAAY;YACnB,OAAO,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,IAAI,CAAC,MAAM,GAAG,OAAO,EAAE,MAAM,CAAC,CAAC;IAC5D,CAAC;CACF"}
@@ -0,0 +1,26 @@
1
+ import * as DG from 'datagrok-api/dg';
2
+ export declare const SUBSTRUCT_COL = "substruct-col";
3
+ export interface ISubstruct {
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+ atoms?: number[];
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+ bonds?: number[];
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+ highlightAtomColors?: {
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+ [key: number]: number[] | null;
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+ };
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+ highlightBondColors?: {
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+ [key: number]: number[] | null;
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+ };
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+ }
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+ export type ToAtomicLevelResType = {
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+ molCol: DG.Column<string>;
15
+ molHighlightCol: DG.Column<object>;
16
+ };
17
+ export interface ISeqHelper {
18
+ /**
19
+ * @param helmCol {DG.Column<string>} Macromolecules in Helm format
20
+ * @param chiralityEngine {boolean} [true] Use chirality engine for molecule visualization
21
+ * @param highlight {boolean} [true] Generates molHighlightCol of result
22
+ **/
23
+ helmToAtomicLevel(helmCol: DG.Column<string>, chiralityEngine?: boolean, highlight?: boolean): Promise<ToAtomicLevelResType>;
24
+ }
25
+ export declare function getSeqHelper(): Promise<ISeqHelper>;
26
+ //# sourceMappingURL=seq-helper.d.ts.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"seq-helper.d.ts","sourceRoot":"","sources":["seq-helper.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAEtC,eAAO,MAAM,aAAa,kBAAkB,CAAC;AAE7C,MAAM,WAAW,UAAU;IACzB,KAAK,CAAC,EAAE,MAAM,EAAE,CAAC;IACjB,KAAK,CAAC,EAAE,MAAM,EAAE,CAAC;IACjB,mBAAmB,CAAC,EAAE;QAAE,CAAC,GAAG,EAAE,MAAM,GAAG,MAAM,EAAE,GAAG,IAAI,CAAA;KAAE,CAAC;IACzD,mBAAmB,CAAC,EAAE;QAAE,CAAC,GAAG,EAAE,MAAM,GAAG,MAAM,EAAE,GAAG,IAAI,CAAA;KAAE,CAAA;CACzD;AAED,MAAM,MAAM,oBAAoB,GAAG;IACjC,MAAM,EAAE,EAAE,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC;IAC1B,eAAe,EAAE,EAAE,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC;CACpC,CAAA;AAED,MAAM,WAAW,UAAU;IACzB;;;;QAII;IACJ,iBAAiB,CACf,OAAO,EAAE,EAAE,CAAC,MAAM,CAAC,MAAM,CAAC,EAAE,eAAe,CAAC,EAAE,OAAO,EAAE,SAAS,CAAC,EAAE,OAAO,GACzE,OAAO,CAAC,oBAAoB,CAAC,CAAC;CAClC;AAED,wBAAsB,YAAY,IAAI,OAAO,CAAC,UAAU,CAAC,CAOxD"}
@@ -0,0 +1,11 @@
1
+ import * as DG from 'datagrok-api/dg';
2
+ export const SUBSTRUCT_COL = 'substruct-col';
3
+ export async function getSeqHelper() {
4
+ const packageName = 'Bio';
5
+ const funcList = DG.Func.find({ package: packageName, name: `getSeqHelper` });
6
+ if (funcList.length === 0)
7
+ throw new Error(`Package '${packageName}' must be installed for SeqHelper.`);
8
+ const res = (await funcList[0].prepare().call()).getOutputParamValue();
9
+ return res;
10
+ }
11
+ //# sourceMappingURL=seq-helper.js.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"seq-helper.js","sourceRoot":"","sources":["seq-helper.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAEtC,MAAM,CAAC,MAAM,aAAa,GAAG,eAAe,CAAC;AAyB7C,MAAM,CAAC,KAAK,UAAU,YAAY;IAChC,MAAM,WAAW,GAAG,KAAK,CAAC;IAC1B,MAAM,QAAQ,GAAG,EAAE,CAAC,IAAI,CAAC,IAAI,CAAC,EAAC,OAAO,EAAE,WAAW,EAAE,IAAI,EAAE,cAAc,EAAC,CAAC,CAAC;IAC5E,IAAI,QAAQ,CAAC,MAAM,KAAK,CAAC;QACvB,MAAM,IAAI,KAAK,CAAC,YAAY,WAAW,oCAAoC,CAAC,CAAC;IAC/E,MAAM,GAAG,GAAG,CAAC,MAAM,QAAQ,CAAC,CAAC,CAAC,CAAC,OAAO,EAAE,CAAC,IAAI,EAAE,CAAC,CAAC,mBAAmB,EAAgB,CAAC;IACrF,OAAO,GAAG,CAAC;AACb,CAAC"}