@datagrok-libraries/bio 5.42.6 → 5.42.7
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/CHANGELOG.md +10 -0
- package/package.json +5 -5
- package/src/aminoacids.js +21 -21
- package/src/aminoacids.js.map +1 -1
- package/src/helm/consts.js +2 -1
- package/src/helm/consts.js.map +1 -1
- package/src/helm/helm-helper.d.ts +12 -16
- package/src/helm/helm-helper.d.ts.map +1 -1
- package/src/helm/helm-helper.js +2 -0
- package/src/helm/helm-helper.js.map +1 -1
- package/src/helm/types.d.ts +8 -8
- package/src/helm/types.d.ts.map +1 -1
- package/src/molecule/molecule-units-handler.js.map +1 -1
- package/src/molecule-3d/molecule-3d-units-handler.js.map +1 -1
- package/src/monomer-works/consts.js +1 -1
- package/src/monomer-works/consts.js.map +1 -1
- package/src/monomer-works/lib-settings.d.ts +4 -2
- package/src/monomer-works/lib-settings.d.ts.map +1 -1
- package/src/monomer-works/lib-settings.js +2 -0
- package/src/monomer-works/lib-settings.js.map +1 -1
- package/src/monomer-works/monomer-utils.d.ts +12 -2
- package/src/monomer-works/monomer-utils.d.ts.map +1 -1
- package/src/monomer-works/monomer-utils.js +10 -14
- package/src/monomer-works/monomer-utils.js.map +1 -1
- package/src/monomer-works/monomer-works.js +8 -7
- package/src/monomer-works/monomer-works.js.map +1 -1
- package/src/monomer-works/seq-to-molfile-worker.js.map +1 -1
- package/src/monomer-works/seq-to-molfile.js.map +1 -1
- package/src/monomer-works/to-atomic-level-utils.js.map +1 -1
- package/src/monomer-works/to-atomic-level.js.map +1 -1
- package/src/nucleotides.js +1 -1
- package/src/nucleotides.js.map +1 -1
- package/src/pdb/format/types-base.js.map +1 -1
- package/src/sequence-encoder.js +6 -6
- package/src/sequence-encoder.js.map +1 -1
- package/src/tests/monomer-lib-tests.js.map +1 -1
- package/src/trees/phylocanvas.js.map +1 -1
- package/src/types/index.d.ts +24 -1
- package/src/types/index.d.ts.map +1 -1
- package/src/types/index.js.map +1 -1
- package/src/types/ngl.d.ts +0 -1
- package/src/types/ngl.d.ts.map +1 -1
- package/src/unknown.js.map +1 -1
- package/src/utils/cell-renderer-async-base.d.ts.map +1 -1
- package/src/utils/cell-renderer-async-base.js +10 -0
- package/src/utils/cell-renderer-async-base.js.map +1 -1
- package/src/utils/cell-renderer-back-base.d.ts +2 -1
- package/src/utils/cell-renderer-back-base.d.ts.map +1 -1
- package/src/utils/cell-renderer-back-base.js +5 -7
- package/src/utils/cell-renderer-back-base.js.map +1 -1
- package/src/utils/cell-renderer-monomer-placer.d.ts.map +1 -1
- package/src/utils/cell-renderer-monomer-placer.js +16 -5
- package/src/utils/cell-renderer-monomer-placer.js.map +1 -1
- package/src/utils/cell-renderer.d.ts +1 -1
- package/src/utils/cell-renderer.d.ts.map +1 -1
- package/src/utils/cell-renderer.js.map +1 -1
- package/src/utils/const.d.ts +3 -2
- package/src/utils/const.d.ts.map +1 -1
- package/src/utils/const.js +1 -1
- package/src/utils/const.js.map +1 -1
- package/src/utils/docker.d.ts.map +1 -1
- package/src/utils/docker.js.map +1 -1
- package/src/utils/fasta-handler.js.map +1 -1
- package/src/utils/generator.js.map +1 -1
- package/src/utils/macromolecule/alignment.js.map +1 -1
- package/src/utils/macromolecule/scoring.js.map +1 -1
- package/src/utils/macromolecule/utils.js.map +1 -1
- package/src/utils/seq-handler.js +1 -1
- package/src/utils/seq-handler.js.map +1 -1
- package/src/utils/splitter.js.map +1 -1
- package/src/utils/units-handler-base.d.ts.map +1 -1
- package/src/utils/units-handler-base.js.map +1 -1
- package/src/utils.js.map +1 -1
- package/src/viewers/web-logo.d.ts.map +1 -1
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1
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@@ -12,6 +12,7 @@ export declare abstract class CellRendererBackBase<TValue> implements IRenderer
|
|
|
12
12
|
protected readonly tableCol: DG.Column<TValue>;
|
|
13
13
|
readonly logger: ILogger;
|
|
14
14
|
protected subs: Unsubscribable[];
|
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15
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+
protected dirty: boolean;
|
|
15
16
|
protected destroyed: boolean;
|
|
16
17
|
/** Overriding care to trigger {@link onRendered} event. */
|
|
17
18
|
protected constructor(
|
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@@ -22,7 +23,7 @@ export declare abstract class CellRendererBackBase<TValue> implements IRenderer
|
|
|
22
23
|
protected toLog(): string;
|
|
23
24
|
protected destroy(): void;
|
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24
25
|
protected invalidateGrid(): void;
|
|
25
|
-
protected
|
|
26
|
+
protected reset(): void;
|
|
26
27
|
errors: Error[];
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|
27
28
|
protected _onRendered: Subject<void>;
|
|
28
29
|
get onRendered(): Observable<void>;
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"cell-renderer-back-base.d.ts","sourceRoot":"","sources":["cell-renderer-back-base.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAGtC,OAAO,EAAC,UAAU,EAAE,OAAO,EAAE,cAAc,EAAC,MAAM,MAAM,CAAC;AAIzD,OAAO,EAAC,OAAO,EAAC,MAAM,UAAU,CAAC;AACjC,OAAO,EAAC,SAAS,EAAC,MAAM,mBAAmB,CAAC;AAE5C,KAAK,oBAAoB,CAAC,KAAK,IAAI;IACjC,YAAY,EAAE,KAAK,CAAC;CACrB,CAAA;AAED,wBAAgB,uBAAuB,CAAC,MAAM,EAAE,KAAK,SAAS,oBAAoB,CAAC,MAAM,CAAC,EACxF,QAAQ,EAAE,EAAE,CAAC,QAAQ,GACpB,CAAC,EAAE,CAAC,UAAU,GAAG,IAAI,EAAE,EAAE,CAAC,MAAM,CAAC,MAAM,CAAC,EAAE,oBAAoB,CAAC,KAAK,CAAC,CAAC,CAcxE;AAED,8BAAsB,oBAAoB,CAAC,MAAM,CAAE,YAAW,SAAS;
|
|
1
|
+
{"version":3,"file":"cell-renderer-back-base.d.ts","sourceRoot":"","sources":["cell-renderer-back-base.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAGtC,OAAO,EAAC,UAAU,EAAE,OAAO,EAAE,cAAc,EAAC,MAAM,MAAM,CAAC;AAIzD,OAAO,EAAC,OAAO,EAAC,MAAM,UAAU,CAAC;AACjC,OAAO,EAAC,SAAS,EAAC,MAAM,mBAAmB,CAAC;AAE5C,KAAK,oBAAoB,CAAC,KAAK,IAAI;IACjC,YAAY,EAAE,KAAK,CAAC;CACrB,CAAA;AAED,wBAAgB,uBAAuB,CAAC,MAAM,EAAE,KAAK,SAAS,oBAAoB,CAAC,MAAM,CAAC,EACxF,QAAQ,EAAE,EAAE,CAAC,QAAQ,GACpB,CAAC,EAAE,CAAC,UAAU,GAAG,IAAI,EAAE,EAAE,CAAC,MAAM,CAAC,MAAM,CAAC,EAAE,oBAAoB,CAAC,KAAK,CAAC,CAAC,CAcxE;AAED,8BAAsB,oBAAoB,CAAC,MAAM,CAAE,YAAW,SAAS;IAOnE,qCAAqC;IACrC,SAAS,CAAC,QAAQ,CAAC,OAAO,EAAE,EAAE,CAAC,UAAU,GAAG,IAAI;IAChD,SAAS,CAAC,QAAQ,CAAC,QAAQ,EAAE,EAAE,CAAC,MAAM,CAAC,MAAM,CAAC;aAC9B,MAAM,EAAE,OAAO;IATjC,SAAS,CAAC,IAAI,EAAE,cAAc,EAAE,CAAM;IACtC,SAAS,CAAC,KAAK,EAAE,OAAO,CAAQ;IAChC,SAAS,CAAC,SAAS,EAAE,OAAO,CAAS;IAErC,2DAA2D;IAC3D,SAAS;IACP,qCAAqC;IAClB,OAAO,EAAE,EAAE,CAAC,UAAU,GAAG,IAAI,EAC7B,QAAQ,EAAE,EAAE,CAAC,MAAM,CAAC,MAAM,CAAC,EAC9B,MAAM,EAAE,OAAO;IAgCjC,OAAO,CAAC,MAAM,CAAC,aAAa,CAAc;IAC1C,OAAO,CAAC,QAAQ,CAAC,QAAQ,CAAgD;IAEzE,SAAS,CAAC,KAAK,IAAI,MAAM;IAIzB,SAAS,CAAC,OAAO,IAAI,IAAI;IAMzB,SAAS,CAAC,cAAc,IAAI,IAAI;IAIhC,SAAS,CAAC,KAAK,IAAI,IAAI;IAMhB,MAAM,EAAE,KAAK,EAAE,CAAM;IAE5B,SAAS,CAAC,WAAW,EAAE,OAAO,CAAC,IAAI,CAAC,CAAuB;IAE3D,IAAI,UAAU,IAAI,UAAU,CAAC,IAAI,CAAC,CAA6B;IAE/D,UAAU,CAAC,MAAM,CAAC,EAAE,MAAM,GAAG,IAAI;IAI3B,aAAa,CACjB,OAAO,GAAE,MAAc,EAAE,MAAM,GAAE,MAA6B,GAC7D,OAAO,CAAC,IAAI,CAAC;CAejB"}
|
|
@@ -26,20 +26,15 @@ export class CellRendererBackBase {
|
|
|
26
26
|
this.tableCol = tableCol;
|
|
27
27
|
this.logger = logger;
|
|
28
28
|
this.subs = [];
|
|
29
|
+
this.dirty = true;
|
|
29
30
|
this.destroyed = false;
|
|
30
31
|
this.viewerId = ++CellRendererBackBase.viewerCounter;
|
|
31
32
|
// -- IRenderer --
|
|
32
33
|
this.errors = [];
|
|
33
34
|
this._onRendered = new Subject();
|
|
34
|
-
this.reset();
|
|
35
35
|
if (this.tableCol && this.tableCol.dataFrame) {
|
|
36
36
|
this.subs.push(this.tableCol.dataFrame.onDataChanged.subscribe(() => {
|
|
37
|
-
|
|
38
|
-
this.reset();
|
|
39
|
-
}
|
|
40
|
-
catch (err) {
|
|
41
|
-
this.logger.error(err);
|
|
42
|
-
}
|
|
37
|
+
this.dirty = true;
|
|
43
38
|
}));
|
|
44
39
|
}
|
|
45
40
|
if (this.tableCol) {
|
|
@@ -81,6 +76,9 @@ export class CellRendererBackBase {
|
|
|
81
76
|
if (this.gridCol && this.gridCol.dart)
|
|
82
77
|
this.gridCol.grid?.invalidate();
|
|
83
78
|
}
|
|
79
|
+
reset() {
|
|
80
|
+
this.dirty = false;
|
|
81
|
+
}
|
|
84
82
|
get onRendered() { return this._onRendered; }
|
|
85
83
|
invalidate(caller) {
|
|
86
84
|
this.invalidateGrid();
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"cell-renderer-back-base.js","sourceRoot":"","sources":["cell-renderer-back-base.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,IAAI,MAAM,mBAAmB,CAAC;AAI1C,OAAO,EAAa,OAAO,EAAiB,MAAM,MAAM,CAAC;AAEzD,OAAO,EAAC,SAAS,EAAC,MAAM,oCAAoC,CAAC;AAS7D,MAAM,UAAU,uBAAuB,CACrC,QAAqB;IAErB,IAAI,IAAI,GAAuC,IAAI,CAAC;IACpD,IAAI,OAAO,GAAyB,IAAI,CAAC;IACzC,IAAI;
|
|
1
|
+
{"version":3,"file":"cell-renderer-back-base.js","sourceRoot":"","sources":["cell-renderer-back-base.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,IAAI,MAAM,mBAAmB,CAAC;AAI1C,OAAO,EAAa,OAAO,EAAiB,MAAM,MAAM,CAAC;AAEzD,OAAO,EAAC,SAAS,EAAC,MAAM,oCAAoC,CAAC;AAS7D,MAAM,UAAU,uBAAuB,CACrC,QAAqB;IAErB,IAAI,IAAI,GAAuC,IAAI,CAAC;IACpD,IAAI,OAAO,GAAyB,IAAI,CAAC;IACzC,IAAI,CAAC;QACH,OAAO,GAAG,QAAQ,CAAC,IAAI,CAAC,CAAC,CAAC,QAAQ,CAAC,UAAU,CAAC,CAAC,CAAC,IAAI,CAAC;QACrD,IAAI,GAAG,OAAO,CAAC,CAAC,CAAC,OAAO,CAAC,IAAmC,CAAC,CAAC,CAAC,IAAI,CAAC;IACtE,CAAC;IAAC,MAAM,CAAC;QAAC,CAAC,OAAO,EAAE,IAAI,CAAC,GAAG,CAAC,IAAI,EAAE,IAAI,CAAC,CAAC;IAAC,CAAC;IAE3C,MAAM,QAAQ,GAAsB,QAAQ,CAAC,IAAI,CAAC,MAAM,CAAC;IACzD,IAAI,GAAG,IAAI,IAAI,QAAQ,CAAC,IAAI,CAAC;IAE7B,IAAI,CAAC,IAAI;QACP,MAAM,IAAI,KAAK,CAAC,iEAAiE,CAAC,CAAC;IACrF,OAAO,CAAC,OAAO,EAAE,QAAQ,EAAE,IAAI,CAAC,CAAC;AACnC,CAAC;AAED,MAAM,OAAgB,oBAAoB;IAKxC,2DAA2D;IAC3D;IACE,qCAAqC;IAClB,OAA6B,EAC7B,QAA2B,EAC9B,MAAe;QAFZ,YAAO,GAAP,OAAO,CAAsB;QAC7B,aAAQ,GAAR,QAAQ,CAAmB;QAC9B,WAAM,GAAN,MAAM,CAAS;QATvB,SAAI,GAAqB,EAAE,CAAC;QAC5B,UAAK,GAAY,IAAI,CAAC;QACtB,cAAS,GAAY,KAAK,CAAC;QAwCpB,aAAQ,GAAW,EAAE,oBAAoB,CAAC,aAAa,CAAC;QAoBzE,kBAAkB;QAEX,WAAM,GAAY,EAAE,CAAC;QAElB,gBAAW,GAAkB,IAAI,OAAO,EAAQ,CAAC;QAvDzD,IAAI,IAAI,CAAC,QAAQ,IAAI,IAAI,CAAC,QAAQ,CAAC,SAAS,EAAE,CAAC;YAC7C,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,QAAQ,CAAC,SAAS,CAAC,aAAa,CAAC,SAAS,CAAC,GAAG,EAAE;gBAClE,IAAI,CAAC,KAAK,GAAG,IAAI,CAAC;YACpB,CAAC,CAAC,CAAC,CAAC;QACN,CAAC;QAED,IAAI,IAAI,CAAC,QAAQ,EAAE,CAAC;YAClB,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,MAAM,CAAC,cAAc,CAAC,SAAS,CAAC,CAAC,SAAS,EAAE,EAAE;gBAChE,IAAI,CAAC;oBACH,MAAM,OAAO,GAAiB,SAAS,CAAC,IAAI,CAAC,SAAS,CAAC;oBACvD,IAAI,IAAI,CAAC,QAAQ,EAAE,SAAS,CAAC,EAAE,KAAK,OAAO,CAAC,EAAE,IAAI,CAAC,IAAI,CAAC,SAAS;wBAC/D,IAAI,CAAC,OAAO,EAAE,CAAC;gBACnB,CAAC;gBAAC,OAAO,GAAG,EAAE,CAAC;oBAAC,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC;gBAAC,CAAC;YAC3C,CAAC,CAAC,CAAC,CAAC;QACN,CAAC;QAED,IAAI,IAAI,CAAC,OAAO,EAAE,CAAC;YACjB,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,MAAM,CAAC,cAAc,CAAC,SAAS,CAAC,CAAC,SAAS,EAAE,EAAE;gBAChE,IAAI,CAAC;oBACH,MAAM,SAAS,GAAG,SAAS,CAAC,IAAI,CAAC,IAAI,CAAC;oBACtC,IACE,IAAI,CAAC,OAAO,EAAE,IAAI;wBAClB,IAAI,CAAC,OAAO,CAAC,IAAI,IAAI,IAAI,CAAC,OAAO,EAAE,IAAI,EAAE,IAAI;wBAC7C,IAAI,CAAC,OAAO,EAAE,IAAI,EAAE,IAAI,EAAE,EAAE,KAAK,SAAS,CAAC,EAAE,IAAI,CAAC,IAAI,CAAC,SAAS;wBAChE,IAAI,CAAC,OAAO,EAAE,CAAC;gBACnB,CAAC;gBAAC,OAAO,GAAQ,EAAE,CAAC;oBAAC,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC;gBAAC,CAAC;YAChD,CAAC,CAAC,CAAC,CAAC;QACN,CAAC;IACH,CAAC;IAKS,KAAK;QACb,OAAO,GAAG,IAAI,CAAC,WAAW,CAAC,IAAI,IAAI,IAAI,CAAC,QAAQ,GAAG,CAAC;IACtD,CAAC;IAES,OAAO;QACf,KAAK,MAAM,GAAG,IAAI,IAAI,CAAC,IAAI;YACzB,GAAG,CAAC,WAAW,EAAE,CAAC;QACpB,IAAI,CAAC,SAAS,GAAG,IAAI,CAAC;IACxB,CAAC;IAES,cAAc;QACtB,IAAI,IAAI,CAAC,OAAO,IAAI,IAAI,CAAC,OAAO,CAAC,IAAI;YAAE,IAAI,CAAC,OAAO,CAAC,IAAI,EAAE,UAAU,EAAE,CAAC;IACzE,CAAC;IAES,KAAK;QACb,IAAI,CAAC,KAAK,GAAG,KAAK,CAAC;IACrB,CAAC;IAQD,IAAI,UAAU,KAAuB,OAAO,IAAI,CAAC,WAAW,CAAC,CAAC,CAAC;IAE/D,UAAU,CAAC,MAAe;QACxB,IAAI,CAAC,cAAc,EAAE,CAAC;IACxB,CAAC;IAED,KAAK,CAAC,aAAa,CACjB,UAAkB,KAAK,EAAE,SAAiB,GAAG,OAAO,UAAU;QAE9D,MAAM,SAAS,GAAG,GAAG,IAAI,CAAC,KAAK,EAAE,kBAAkB,CAAC;QACpD,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,GAAG,SAAS,2BAA2B,CAAC,CAAC;QAC3D,MAAM,SAAS,CAAC,IAAI,CAAC,WAAW,EAAE,GAAG,EAAE,GAAE,CAAC,EAAE,GAAG,EAAE;YAC/C,IAAI,CAAC,UAAU,EAAE,CAAC;QACpB,CAAC,EAAE,OAAO,EAAE,GAAG,SAAS,KAAK,MAAM,EAAE,CAAC,CAAC;QAEvC,kDAAkD;QAClD,IAAI,IAAI,CAAC,MAAM,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;YAC3B,MAAM,GAAG,GAAG,IAAI,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC;YAC3B,IAAI,CAAC,MAAM,GAAG,EAAE,CAAC;YACjB,MAAM,GAAG,CAAC;QACZ,CAAC;QACD,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,GAAG,SAAS,OAAO,CAAC,CAAC;IACzC,CAAC;;AAjDc,kCAAa,GAAW,CAAC,CAAC,AAAb,CAAc"}
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"cell-renderer-monomer-placer.d.ts","sourceRoot":"","sources":["cell-renderer-monomer-placer.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAItC,OAAO,EAAC,UAAU,EAAC,MAAM,eAAe,CAAC;AACzC,OAAO,EAAC,kBAAkB,EAAC,MAAM,iBAAiB,CAAC;AAEnD,OAAO,EAAC,oBAAoB,EAAC,MAAM,2BAA2B,CAAC;AAC/D,OAAO,EAAC,OAAO,EAAC,MAAM,UAAU,CAAC;
|
|
1
|
+
{"version":3,"file":"cell-renderer-monomer-placer.d.ts","sourceRoot":"","sources":["cell-renderer-monomer-placer.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAItC,OAAO,EAAC,UAAU,EAAC,MAAM,eAAe,CAAC;AACzC,OAAO,EAAC,kBAAkB,EAAC,MAAM,iBAAiB,CAAC;AAEnD,OAAO,EAAC,oBAAoB,EAAC,MAAM,2BAA2B,CAAC;AAC/D,OAAO,EAAC,OAAO,EAAC,MAAM,UAAU,CAAC;AAIjC,KAAK,kBAAkB,GAAG;IACxB,UAAU,EAAE,UAAU,CAAC;IACvB,gBAAgB,EAAE,MAAM,CAAC;IAAC,cAAc,EAAE,MAAM,CAAC;IACjD,cAAc,EAAE,kBAAkB,CAAA;CACnC,CAAC;AAEF,wBAAgB,SAAS,CAAC,MAAM,EAAE,MAAM,EAAE,EAAE,CAAC,EAAE,MAAM,GAAG,MAAM,GAAG,IAAI,CAoBpE;AAED,qBAAa,aAAc,SAAQ,oBAAoB,CAAC,MAAM,CAAC;IAkBpD,kBAAkB,EAAE,MAAM;IACjC,OAAO,CAAC,QAAQ,CAAC,aAAa;IAlBhC,OAAO,CAAC,QAAQ,CAAa;IAC7B,OAAO,CAAC,kBAAkB,CAA2B;IAGrD,OAAO,CAAC,cAAc,CAAK;IACpB,KAAK,EAAE,kBAAkB,CAAC;IACjC,OAAO,CAAC,cAAc,CAAY;IAClC,OAAO,CAAC,6BAA6B,CAAa;IAE3C,iBAAiB,EAAE;QAAE,CAAC,GAAG,EAAE,MAAM,GAAG,WAAW,CAAA;KAAE,CAAM;IACvD,oBAAoB,EAAE;QAAE,CAAC,GAAG,EAAE,MAAM,GAAG,WAAW,CAAA;KAAE,CAAM;IAEjE,sEAAsE;gBAEpE,OAAO,EAAE,EAAE,CAAC,UAAU,GAAG,IAAI,EAC7B,QAAQ,EAAE,EAAE,CAAC,MAAM,CAAC,MAAM,CAAC,EAC3B,MAAM,EAAE,OAAO,EACR,kBAAkB,EAAE,MAAM,EAChB,aAAa,EAAE,MAAM,kBAAkB;cAsBvC,KAAK,IAAI,IAAI;IAShC,qGAAqG;IAC9F,qBAAqB,CAAC,MAAM,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,CAAC,MAAM,EAAE,EAAE,MAAM,EAAE,CAAC;IAsBpF,OAAO,CAAC,2BAA2B;IA+BnC,OAAO,CAAC,8BAA8B;IAmDtC,yCAAyC;IAClC,WAAW,CAAC,MAAM,EAAE,MAAM,EAAE,CAAC,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM,GAAG,MAAM,GAAG,IAAI;IASpE,qBAAqB,CAAC,KAAK,EAAE,MAAM,GAAG,IAAI;IAK1C,iBAAiB,CAAC,KAAK,EAAE,MAAM,GAAG,IAAI;IAKtC,KAAK,IAAI,OAAO;CAGxB"}
|
|
@@ -3,6 +3,7 @@ import wu from 'wu';
|
|
|
3
3
|
import { SeqHandler } from './seq-handler';
|
|
4
4
|
import { CellRendererBackBase } from './cell-renderer-back-base';
|
|
5
5
|
import { getMonomerLibHelper } from '../monomer-works/monomer-utils';
|
|
6
|
+
import { errInfo } from './err-info';
|
|
6
7
|
export function hitBounds(bounds, x) {
|
|
7
8
|
let iterationCount = 100;
|
|
8
9
|
let leftI = 0;
|
|
@@ -46,9 +47,9 @@ export class MonomerPlacer extends CellRendererBackBase {
|
|
|
46
47
|
getMonomerLibHelper().then((libHelper) => {
|
|
47
48
|
if (this.destroyed)
|
|
48
49
|
return;
|
|
49
|
-
const monomerLib = libHelper.
|
|
50
|
+
const monomerLib = libHelper.getMonomerLib();
|
|
50
51
|
this.subs.push(monomerLib.onChanged.subscribe(() => {
|
|
51
|
-
this.
|
|
52
|
+
this.dirty = true;
|
|
52
53
|
this.gridCol?.grid?.invalidate();
|
|
53
54
|
}));
|
|
54
55
|
});
|
|
@@ -60,12 +61,22 @@ export class MonomerPlacer extends CellRendererBackBase {
|
|
|
60
61
|
this._monomerLengthList = null;
|
|
61
62
|
this._monomerLengthMap = {};
|
|
62
63
|
this._monomerStructureMap = {};
|
|
64
|
+
super.reset();
|
|
63
65
|
}
|
|
64
66
|
/** Returns monomers lengths of the {@link rowIdx} and cumulative sums for borders, monomer places */
|
|
65
67
|
getCellMonomerLengths(rowIdx, newWidth) {
|
|
66
68
|
if (this.colWidth < newWidth) {
|
|
67
69
|
this.colWidth = newWidth;
|
|
68
|
-
this.
|
|
70
|
+
this.dirty = true;
|
|
71
|
+
}
|
|
72
|
+
if (this.dirty) {
|
|
73
|
+
try {
|
|
74
|
+
this.reset();
|
|
75
|
+
}
|
|
76
|
+
catch (err) {
|
|
77
|
+
const [errMsg, errStack] = errInfo(err);
|
|
78
|
+
this.logger.error(errMsg, undefined, errStack);
|
|
79
|
+
}
|
|
69
80
|
}
|
|
70
81
|
const res = this.props.seqHandler.isMsa() ? this.getCellMonomerLengthsForSeqMsa() :
|
|
71
82
|
this.getCellMonomerLengthsForSeq(rowIdx);
|
|
@@ -164,11 +175,11 @@ export class MonomerPlacer extends CellRendererBackBase {
|
|
|
164
175
|
}
|
|
165
176
|
setMonomerLengthLimit(limit) {
|
|
166
177
|
this.monomerLengthLimit = limit;
|
|
167
|
-
this.
|
|
178
|
+
this.dirty = true;
|
|
168
179
|
}
|
|
169
180
|
setSeparatorWidth(width) {
|
|
170
181
|
this.props.separatorWidth = width;
|
|
171
|
-
this.
|
|
182
|
+
this.dirty = true;
|
|
172
183
|
}
|
|
173
184
|
isMsa() {
|
|
174
185
|
return this.props.seqHandler.isMsa();
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"cell-renderer-monomer-placer.js","sourceRoot":"","sources":["cell-renderer-monomer-placer.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAEtC,OAAO,EAAE,MAAM,IAAI,CAAC;AAEpB,OAAO,EAAC,UAAU,EAAC,MAAM,eAAe,CAAC;AAGzC,OAAO,EAAC,oBAAoB,EAAC,MAAM,2BAA2B,CAAC;AAE/D,OAAO,EAAC,mBAAmB,EAAC,MAAM,gCAAgC,CAAC;
|
|
1
|
+
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@@ -23,7 +23,7 @@ export declare const PrintOptionsDefaults: {
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23
23
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/** Map of monomers' text sizes */ monomerTextSizeMap: {
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24
24
|
[key: string]: TextMetrics;
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25
25
|
};
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26
|
-
/** */ logger?: ILogger
|
|
26
|
+
/** */ logger?: ILogger;
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27
27
|
};
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28
28
|
export type PrintOptions = typeof PrintOptionsDefaults;
|
|
29
29
|
/** A function that prints a string aligned to left or centered.
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|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"cell-renderer.d.ts","sourceRoot":"","sources":["cell-renderer.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAGtC,OAAO,EAAC,OAAO,EAAC,MAAM,UAAU,CAAC;AAOjC,oBAAY,IAAI;IACd,gBAAgB,sCAAsC;CACvD;AAED,oBAAY,SAAS;IACnB,GAAG,QAAQ;IACX,OAAO,YAAY;CACpB;AAED,eAAO,MAAM,oBAAoB;IAC/B,6BAA6B,QAAQ,MAAM;IAC3C,MAAM,QAAQ,MAAM;IACpB,sBAAsB,OAAO,OAAO;IACpC,uDAAuD,mBAAmB,MAAM;IAChF,wCAAwC,YAAY,MAAM;IAC1D,wCAAwC,OAAO,OAAO;IACtD,iDAAiD,YAAY,SAAS;IACtE,oDAAoD,UAAU,MAAM,EAAE;IACtE,mCAAmC,UAAU,MAAM;IACnD,OAAO,WAAW,
|
|
1
|
+
{"version":3,"file":"cell-renderer.d.ts","sourceRoot":"","sources":["cell-renderer.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAGtC,OAAO,EAAC,OAAO,EAAC,MAAM,UAAU,CAAC;AAOjC,oBAAY,IAAI;IACd,gBAAgB,sCAAsC;CACvD;AAED,oBAAY,SAAS;IACnB,GAAG,QAAQ;IACX,OAAO,YAAY;CACpB;AAED,eAAO,MAAM,oBAAoB;IAC/B,6BAA6B,QAAQ,MAAM;IAC3C,MAAM,QAAQ,MAAM;IACpB,sBAAsB,OAAO,OAAO;IACpC,uDAAuD,mBAAmB,MAAM;IAChF,wCAAwC,YAAY,MAAM;IAC1D,wCAAwC,OAAO,OAAO;IACtD,iDAAiD,YAAY,SAAS;IACtE,oDAAoD,UAAU,MAAM,EAAE;IACtE,mCAAmC,UAAU,MAAM;IACnD,OAAO,WAAW,EAAE,CAAC,QAAQ,GAAG,IAAI;IACpC,uCAAuC,oBAAoB,MAAM,EAAE,GAAG,IAAI;IAC1E,8BAA8B,qBAAqB,MAAM,GAAG,IAAI;IAChE,kCAAkC,qBAAqB;QAAE,CAAC,GAAG,EAAE,MAAM,GAAG,WAAW,CAAA;KAAE;IACrF,MAAM,UAAU,OAAO;CACtB,CAAC;AAEJ,MAAM,MAAM,YAAY,GAAG,OAAO,oBAAoB,CAAC;AAEvD;;;;;;;;wDAQwD;AACxD,wBAAgB,mBAAmB,CAAC,CAAC,EAAE,wBAAwB,EAC7D,CAAC,EAAE,MAAM,EAAE,CAAC,EAAE,MAAM,EAAE,CAAC,EAAE,MAAM,EAAE,CAAC,EAAE,MAAM,EAAE,CAAC,EAAE,MAAM,EAAE,OAAO,EAAE,OAAO,CAAC,YAAY,CAAC,GACpF,MAAM,CAkER"}
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"cell-renderer.js","sourceRoot":"","sources":["cell-renderer.ts"],"names":[],"mappings":"AAIA,OAAO,EAAC,cAAc,EAAC,MAAM,uBAAuB,CAAC;AAGrD,MAAM,cAAc,GAAG,kBAAkB,CAAC;AAC1C,MAAM,SAAS,GAAG,SAAS,CAAC;AAC5B,MAAM,UAAU,GAAG,YAAY,CAAC;AAChC,MAAM,sBAAsB,GAA0D,cAAc,CAAC;AAErG,MAAM,CAAN,IAAY,IAEX;AAFD,WAAY,IAAI;IACd,8DAAsD,CAAA;AACxD,CAAC,EAFW,IAAI,KAAJ,IAAI,QAEf;AAED,MAAM,CAAN,IAAY,SAGX;AAHD,WAAY,SAAS;IACnB,wBAAW,CAAA;IACX,gCAAmB,CAAA;AACrB,CAAC,EAHW,SAAS,KAAT,SAAS,QAGpB;AAED,MAAM,CAAC,MAAM,oBAAoB,GAAG,IAAI;IAAA;QACtC,6BAA6B,CAAC,UAAK,GAAW,cAAc,CAAC;QAC7D,MAAM,CAAC,UAAK,GAAW,CAAC,CAAC;QACzB,sBAAsB,CAAC,SAAI,GAAY,KAAK,CAAC;QAC7C,uDAAuD,CAAC,qBAAgB,GAAW,GAAG,CAAC;QACvF,wCAAwC,CAAC,cAAS,GAAW,EAAE,CAAC;QAChE,wCAAwC,CAAC,SAAI,GAAY,KAAK,CAAC;QAC/D,iDAAiD,CAAC,cAAS,GAAc,SAAS,CAAC,OAAO,CAAC;QAC3F,oDAAoD,CAAC,YAAO,GAAa,EAAE,CAAC;QAC5E,mCAAmC,CAAC,YAAO,GAAW,CAAC,CAAC;QACxD,OAAO,CAAC,aAAQ,GAAuB,IAAI,CAAC;QAC5C,uCAAuC,CAAC,sBAAiB,GAAoB,IAAI,CAAC;QAClF,8BAA8B,CAAC,uBAAkB,GAAkB,IAAI,CAAC;QACxE,kCAAkC,CAAC,uBAAkB,GAAmC,EAAE,CAAC;QAC3F,MAAM,CAAC,WAAM,GAAa,SAAS,CAAC;IACtC,CAAC;CAAA,EAAE,CAAC;AAIJ;;;;;;;;wDAQwD;AACxD,MAAM,UAAU,mBAAmB,CAAC,CAA2B,EAC7D,CAAS,EAAE,CAAS,EAAE,CAAS,EAAE,CAAS,EAAE,CAAS,EAAE,OAA8B;;IAErF,MAAM,IAAI,GAAG,MAAM,CAAC,MAAM,CAAC,MAAM,CAAC,MAAM,CAAC,EAAE,EAAE,oBAAoB,CAAC,EAAE,OAAO,CAAC,CAAC;IAE7E,MAAM,SAAS,GAAW,4BAA4B,CAAC;IACvD,OAAO,CAAC,MAAM,EAAE,KAAK,CAAC,GAAG,SAAS,SAAS,CAAC,CAAC;IAC7C,CAAC,CAAC,SAAS,GAAG,OAAO,CAAC;IACtB,IAAI,SAAS,GAAG,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,CAAC;IAC/B,IAAI,QAAQ,GAAG,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,SAAS,CAAC;IAC/C,IAAI,IAAI,CAAC,SAAS,KAAK,SAAS,CAAC,GAAG;QAAE,QAAQ,GAAG,EAAE,CAAC;IACpD,IAAI,SAAS,GAAG,IAAI,CAAC;IACrB,IAAI,kBAAkB,GAAG,IAAI,CAAC;IAC9B,IAAI,mBAAmB,GAAG,YAAY,CAAC;IACvC,IAAI,CAAC,IAAI,CAAC,QAAQ,IAAI,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,QAAQ,CAAC,IAAI,CAAC,MAAM,IAAI,IAAI,CAAC,EAAE;
|
|
1
|
+
{"version":3,"file":"cell-renderer.js","sourceRoot":"","sources":["cell-renderer.ts"],"names":[],"mappings":"AAIA,OAAO,EAAC,cAAc,EAAC,MAAM,uBAAuB,CAAC;AAGrD,MAAM,cAAc,GAAG,kBAAkB,CAAC;AAC1C,MAAM,SAAS,GAAG,SAAS,CAAC;AAC5B,MAAM,UAAU,GAAG,YAAY,CAAC;AAChC,MAAM,sBAAsB,GAA0D,cAAc,CAAC;AAErG,MAAM,CAAN,IAAY,IAEX;AAFD,WAAY,IAAI;IACd,8DAAsD,CAAA;AACxD,CAAC,EAFW,IAAI,KAAJ,IAAI,QAEf;AAED,MAAM,CAAN,IAAY,SAGX;AAHD,WAAY,SAAS;IACnB,wBAAW,CAAA;IACX,gCAAmB,CAAA;AACrB,CAAC,EAHW,SAAS,KAAT,SAAS,QAGpB;AAED,MAAM,CAAC,MAAM,oBAAoB,GAAG,IAAI;IAAA;QACtC,6BAA6B,CAAC,UAAK,GAAW,cAAc,CAAC;QAC7D,MAAM,CAAC,UAAK,GAAW,CAAC,CAAC;QACzB,sBAAsB,CAAC,SAAI,GAAY,KAAK,CAAC;QAC7C,uDAAuD,CAAC,qBAAgB,GAAW,GAAG,CAAC;QACvF,wCAAwC,CAAC,cAAS,GAAW,EAAE,CAAC;QAChE,wCAAwC,CAAC,SAAI,GAAY,KAAK,CAAC;QAC/D,iDAAiD,CAAC,cAAS,GAAc,SAAS,CAAC,OAAO,CAAC;QAC3F,oDAAoD,CAAC,YAAO,GAAa,EAAE,CAAC;QAC5E,mCAAmC,CAAC,YAAO,GAAW,CAAC,CAAC;QACxD,OAAO,CAAC,aAAQ,GAAuB,IAAI,CAAC;QAC5C,uCAAuC,CAAC,sBAAiB,GAAoB,IAAI,CAAC;QAClF,8BAA8B,CAAC,uBAAkB,GAAkB,IAAI,CAAC;QACxE,kCAAkC,CAAC,uBAAkB,GAAmC,EAAE,CAAC;QAC3F,MAAM,CAAC,WAAM,GAAa,SAAS,CAAC;IACtC,CAAC;CAAA,EAAE,CAAC;AAIJ;;;;;;;;wDAQwD;AACxD,MAAM,UAAU,mBAAmB,CAAC,CAA2B,EAC7D,CAAS,EAAE,CAAS,EAAE,CAAS,EAAE,CAAS,EAAE,CAAS,EAAE,OAA8B;;IAErF,MAAM,IAAI,GAAG,MAAM,CAAC,MAAM,CAAC,MAAM,CAAC,MAAM,CAAC,EAAE,EAAE,oBAAoB,CAAC,EAAE,OAAO,CAAC,CAAC;IAE7E,MAAM,SAAS,GAAW,4BAA4B,CAAC;IACvD,OAAO,CAAC,MAAM,EAAE,KAAK,CAAC,GAAG,SAAS,SAAS,CAAC,CAAC;IAC7C,CAAC,CAAC,SAAS,GAAG,OAAO,CAAC;IACtB,IAAI,SAAS,GAAG,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,CAAC;IAC/B,IAAI,QAAQ,GAAG,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,SAAS,CAAC;IAC/C,IAAI,IAAI,CAAC,SAAS,KAAK,SAAS,CAAC,GAAG;QAAE,QAAQ,GAAG,EAAE,CAAC;IACpD,IAAI,SAAS,GAAG,IAAI,CAAC;IACrB,IAAI,kBAAkB,GAAG,IAAI,CAAC;IAC9B,IAAI,mBAAmB,GAAG,YAAY,CAAC;IACvC,IAAI,CAAC,IAAI,CAAC,QAAQ,IAAI,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,QAAQ,CAAC,IAAI,CAAC,MAAM,IAAI,IAAI,CAAC,EAAE,CAAC;QACnE,SAAS,GAAG,IAAI,CAAC,QAAQ,CAAC,IAAI,CAAC,MAAM,CAAC,IAAI,CAAC,YAAY,CAAC,IAAI,IAAI,CAAC;QACjE,kBAAkB,GAAG,IAAI,CAAC,QAAQ,CAAC,IAAI,CAAC,MAAM,CAAC,IAAI,CAAC,sBAAsB,CAAC,IAAI,IAAI,CAAC;QACpF,mBAAmB,GAAG,IAAI,CAAC,QAAQ,CAAC,IAAI,CAAC,MAAM,CAAC,IAAI,CAAC,sBAAsB,CAAC,IAAI,YAAY,CAAC;IAC/F,CAAC;IAED,IAAI,IAAI,CAAC,iBAAiB,EAAE,CAAC;QAC3B,MAAM,uBAAuB,GAAG,IAAI,CAAC,iBAAiB,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC;QACrE,IAAI,kBAAkB,IAAI,CAAC,IAAI,CAAC,iBAAiB,CAAC,MAAM,GAAG,CAAC,CAAC,IAAI,CAAC,mBAAmB,KAAK,YAAY,CAAC;YACrG,IAAI,CAAC,gBAAgB,GAAG,CAAC,SAAS,IAAI,uBAAuB,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,IAAI,CAAC,gBAAgB,CAAC;QAC/F,IAAI,kBAAkB,IAAI,CAAC,IAAI,CAAC,iBAAiB,CAAC,MAAM,GAAG,CAAC,CAAC,IAAI,CAAC,mBAAmB,KAAK,OAAO,CAAC;YAChG,IAAI,CAAC,gBAAgB,GAAG,CAAC,SAAS,IAAI,uBAAuB,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,IAAI,CAAC,gBAAgB,CAAC;IACjG,CAAC;IACD,IAAI,IAAI,CAAC,kBAAkB,IAAI,IAAI;QACjC,SAAS,GAAG,sBAAsB,CAAC,SAAS,EAAE,IAAI,CAAC,kBAAkB,CAAC,CAAC;IAEzE,MAAM,QAAQ,GAAG,SAAS,GAAG,QAAQ,CAAC;IACtC,MAAA,IAAI,CAAC,kBAAkB,EAAC,QAAQ,SAAR,QAAQ,IAAM,CAAC,CAAC,WAAW,CAAC,QAAQ,CAAC,EAAC;IAC9D,IAAI,QAAQ,GAAQ,IAAI,CAAC,kBAAkB,CAAC,QAAQ,CAAC,CAAC;IACtD,MAAA,IAAI,CAAC,kBAAkB,EAAC,SAAS,SAAT,SAAS,IAAM,CAAC,CAAC,WAAW,CAAC,SAAS,CAAC,EAAC;IAChE,IAAI,gBAAgB,GAAG,IAAI,CAAC,kBAAkB,CAAC,SAAS,CAAC,CAAC,KAAK,CAAC;IAChE,MAAM,EAAE,GAAG,CAAC,GAAG,CAAC,GAAG,CAAC,QAAQ,CAAC,qBAAqB,GAAG,QAAQ,CAAC,sBAAsB,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC;IAE9F,MAAA,IAAI,CAAC,kBAAkB,EAAC,QAAQ,SAAR,QAAQ,IAAM,CAAC,CAAC,WAAW,CAAC,QAAQ,CAAC,EAAC;IAC9D,MAAM,YAAY,GAAG,IAAI,CAAC,kBAAkB,CAAC,QAAQ,CAAC,CAAC,KAAK,CAAC;IAC7D,QAAQ,GAAG,QAAQ,CAAC,KAAK,CAAC;IAC1B,IAAI,IAAI,CAAC,SAAS,KAAK,SAAS,CAAC,GAAG,EAAE,CAAC;QACrC,gBAAgB,GAAG,IAAI,CAAC,OAAO,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC;QAC9C,QAAQ,GAAG,IAAI,CAAC,OAAO,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC;IACxC,CAAC;IAED,oEAAoE;IACpE,SAAS,IAAI,CAAC,GAAW,EAAE,GAAW;QACpC,MAAM,SAAS,GAAG,SAAS,CAAC,CAAC,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,UAAU,CAAC;QACtD,CAAC,CAAC,SAAS,GAAG,SAAS,CAAC;QACxB,CAAC,CAAC,WAAW,GAAG,IAAI,CAAC,gBAAgB,CAAC;QACtC,IAAI,IAAI,CAAC,SAAS,KAAK,SAAS,CAAC,OAAO,EAAE,CAAC;YACzC,CAAC,CAAC,QAAQ,CAAC,SAAS,EAAE,CAAC,GAAG,GAAG,EAAE,CAAC,GAAG,EAAE,CAAC,CAAC;YACvC,CAAC,CAAC,SAAS,GAAG,SAAS,CAAC;YACxB,CAAC,CAAC,QAAQ,CAAC,QAAQ,EAAE,CAAC,GAAG,GAAG,EAAE,CAAC,GAAG,EAAE,CAAC,CAAC;QACxC,CAAC;QACD,IAAI,IAAI,CAAC,SAAS,KAAK,SAAS,CAAC,GAAG;YAClC,CAAC,CAAC,QAAQ,CAAC,SAAS,EAAE,CAAC,GAAG,GAAG,EAAE,CAAC,GAAG,EAAE,CAAC,CAAC;IAC3C,CAAC;IAED,MAAM,MAAM,GAAW,CAAC,IAAI,CAAC,OAAO,CAAC,IAAI,CAAC,OAAO,CAAC,IAAI,CAAC,CAAC,GAAG,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC;IAClF,IAAI,IAAI,CAAC,IAAI,IAAI,QAAQ,GAAG,CAAC,EAAE,CAAC;QAC9B,IAAI,CAAC,MAAM,EAAE,MAAM,GAAG,gBAAgB,CAAC,CAAC;QACxC,OAAO,CAAC,GAAG,MAAM,GAAG,gBAAgB,GAAG,YAAY,CAAC;IACtD,CAAC;SAAM,CAAC;QACN,MAAM,EAAE,GAAG,CAAC,CAAC,GAAG,QAAQ,CAAC,GAAG,CAAC,CAAC;QAC9B,IAAI,CAAC,EAAE,EAAE,EAAE,GAAG,gBAAgB,CAAC,CAAC;QAChC,OAAO,CAAC,GAAG,MAAM,GAAG,EAAE,GAAG,gBAAgB,CAAC;IAC5C,CAAC;AACH,CAAC"}
|
package/src/utils/const.d.ts
CHANGED
|
@@ -1,3 +1,4 @@
|
|
|
1
|
+
import { MonomerType, PolymerType } from '../helm/types';
|
|
1
2
|
import { MonomerTypes, PolymerTypes } from '../helm/consts';
|
|
2
3
|
import HELM_POLYMER_TYPE = PolymerTypes;
|
|
3
4
|
import HELM_MONOMER_TYPE = MonomerTypes;
|
|
@@ -57,7 +58,7 @@ export declare const jsonSdfMonomerLibDict: {
|
|
|
57
58
|
symbol: string;
|
|
58
59
|
};
|
|
59
60
|
export declare const DUMMY_MONOMER: {
|
|
60
|
-
monomerType:
|
|
61
|
+
monomerType: MonomerType;
|
|
61
62
|
smiles: string;
|
|
62
63
|
name: string;
|
|
63
64
|
author: string;
|
|
@@ -66,7 +67,7 @@ export declare const DUMMY_MONOMER: {
|
|
|
66
67
|
rgroups: RGroup[];
|
|
67
68
|
createDate: null;
|
|
68
69
|
id: number;
|
|
69
|
-
polymerType:
|
|
70
|
+
polymerType: PolymerType;
|
|
70
71
|
symbol: string;
|
|
71
72
|
};
|
|
72
73
|
export declare const MONOMER_ENCODE_MIN = 256;
|
package/src/utils/const.d.ts.map
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"const.d.ts","sourceRoot":"","sources":["const.ts"],"names":[],"mappings":"
|
|
1
|
+
{"version":3,"file":"const.d.ts","sourceRoot":"","sources":["const.ts"],"names":[],"mappings":"AAIA,OAAO,EAAC,WAAW,EAAE,WAAW,EAAC,MAAM,eAAe,CAAC;AACvD,OAAO,EAAC,YAAY,EAAE,YAAY,EAAC,MAAM,gBAAgB,CAAC;AAE1D,OAAO,iBAAiB,GAAG,YAAY,CAAC;AACxC,OAAO,iBAAiB,GAAG,YAAY,CAAC;AACxC,OAAO,EAAC,MAAM,EAAC,MAAM,UAAU,CAAC;AAEhC,OAAO,EAAC,iBAAiB,EAAE,iBAAiB,EAAC,CAAC;AAE9C;uFACuF;AACvF,0BAAkB,mBAAmB;IACnC,MAAM,WAAW;IACjB,IAAI,SAAS;IACb,OAAO,YAAY;IACnB,MAAM,WAAW;IACjB,EAAE,OAAO;IACT,OAAO,YAAY;IACnB,MAAM,WAAW;IACjB,YAAY,gBAAgB;IAC5B,YAAY,gBAAgB;IAC5B,WAAW,eAAe;CAC3B;AAGD,0BAAkB,kBAAkB;IAClC,gBAAgB,mBAAmB;IAEnC,0BAA0B,mBAAmB;IAC7C,YAAY,gBAAgB;IAC5B,cAAc,iBAAiB;IAC/B,KAAK,UAAU;CAChB;AAED,0BAAkB,oBAAoB;IACpC,cAAc,kBAAkB;IAChC,IAAI,SAAS;CACd;AAGD,0BAAkB,WAAW;IAC3B,YAAY,gBAAgB;IAC5B,MAAM,WAAW;IACjB,IAAI,SAAS;IACb,MAAM,WAAW;IACjB,OAAO,YAAY;IACnB,cAAc,kBAAkB;IAChC,OAAO,YAAY;IACnB,WAAW,eAAe;IAC1B,EAAE,OAAO;IACT,YAAY,gBAAgB;IAC5B,MAAM,WAAW;CAClB;AAGD,eAAO,MAAM,gBAAgB,eAO5B,CAAC;AAEF,eAAO,MAAM,gBAAgB,gBAAgB,CAAC;AAG9C,eAAO,MAAM,qBAAqB;;;;;;;;;;;;CAYjC,CAAC;AAEF,eAAO,MAAM,aAAa;iBACK,WAAW;;;;;;aAMvB,MAAM,EAAE;;;iBAGG,WAAW;;CAExC,CAAC;AAEF,eAAO,MAAM,kBAAkB,MAAQ,CAAC;AACxC,eAAO,MAAM,kBAAkB,OAAQ,CAAC;AAExC,eAAO,MAAM,aAAa,MAAM,CAAC;AACjC,eAAO,MAAM,kBAAkB,MAAM,CAAC;AACtC,eAAO,MAAM,gBAAgB,MAAM,CAAC;AACpC,eAAO,MAAM,oBAAoB,QAGhC,CAAC"}
|
package/src/utils/const.js
CHANGED
|
@@ -10,7 +10,7 @@ export const HELM_CORE_FIELDS = [
|
|
|
10
10
|
export const SDF_MONOMER_NAME = 'MonomerName';
|
|
11
11
|
// todo: ideally, keys should be expressed via constants
|
|
12
12
|
export const jsonSdfMonomerLibDict = {
|
|
13
|
-
'monomerType': null,
|
|
13
|
+
'monomerType': null, // -> Backbone
|
|
14
14
|
'smiles': null,
|
|
15
15
|
'name': 'Name',
|
|
16
16
|
'author': null,
|
package/src/utils/const.js.map
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"const.js","sourceRoot":"","sources":["const.ts"],"names":[],"mappings":"AA0DA,oEAAoE;AACpE,MAAM,CAAC,MAAM,gBAAgB,GAAG;;;;;IAK9B,2EAA2E;IAC3E,YAAY;CACb,CAAC;AAEF,MAAM,CAAC,MAAM,gBAAgB,GAAG,aAAa,CAAC;AAE9C,wDAAwD;AACxD,MAAM,CAAC,MAAM,qBAAqB,GAAG;IACnC,aAAa,EAAE,IAAI;
|
|
1
|
+
{"version":3,"file":"const.js","sourceRoot":"","sources":["const.ts"],"names":[],"mappings":"AA0DA,oEAAoE;AACpE,MAAM,CAAC,MAAM,gBAAgB,GAAG;;;;;IAK9B,2EAA2E;IAC3E,YAAY;CACb,CAAC;AAEF,MAAM,CAAC,MAAM,gBAAgB,GAAG,aAAa,CAAC;AAE9C,wDAAwD;AACxD,MAAM,CAAC,MAAM,qBAAqB,GAAG;IACnC,aAAa,EAAE,IAAI,EAAE,cAAc;IACnC,QAAQ,EAAE,IAAI;IACd,MAAM,EAAE,MAAM;IACd,QAAQ,EAAE,IAAI;IACd,SAAS,EAAE,UAAU;IACrB,eAAe,EAAE,0BAA0B;IAC3C,SAAS,EAAE,aAAa;IACxB,YAAY,EAAE,IAAI;IAClB,IAAI,EAAE,IAAI;IACV,aAAa,EAAE,aAAa;IAC5B,QAAQ,EAAE,aAAa;CACxB,CAAC;AAEF,MAAM,CAAC,MAAM,aAAa,GAAG;IAC3B,aAAa,EAAE,UAAyB;IACxC,QAAQ,EAAE,EAAE;IACZ,MAAM,EAAE,EAAE;IACV,QAAQ,EAAE,UAAU;IACpB,SAAS,EAAE,EAAE;IACb,eAAe,EAAE,EAAE;IACnB,SAAS,EAAE,EAAc;IACzB,YAAY,EAAE,IAAI;IAClB,IAAI,EAAE,CAAC;IACP,aAAa,EAAE,SAAwB;IACvC,QAAQ,EAAE,EAAE;CACb,CAAC;AACF,gEAAgE;AAChE,MAAM,CAAC,MAAM,kBAAkB,GAAG,KAAK,CAAC;AACxC,MAAM,CAAC,MAAM,kBAAkB,GAAG,KAAK,CAAC;AAExC,MAAM,CAAC,MAAM,aAAa,GAAG,GAAG,CAAC;AACjC,MAAM,CAAC,MAAM,kBAAkB,GAAG,GAAG,CAAC;AACtC,MAAM,CAAC,MAAM,gBAAgB,GAAG,GAAG,CAAC;AACpC,MAAM,CAAC,MAAM,oBAAoB,GAAG,IAAI,MAAM,CAC5C,IAAI,aAAa,GAAG,kBAAkB,eAAe,gBAAgB,GAAG,EACxE,GAAG,CACJ,CAAC"}
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"docker.d.ts","sourceRoot":"","sources":["docker.ts"],"names":[],"mappings":"AAKA,OAAO,EAAC,OAAO,EAAC,MAAM,UAAU,CAAC;AAGjC,MAAM,MAAM,qBAAqB,GAAG,SAAS,GAAG,SAAS,GAAG,gBAAgB,GAAG,UAAU,GAAG,OAAO,GAAG,UAAU,CAAC;AAEjH,wBAAsB,WAAW,CAC/B,IAAI,EAAE,MAAM,EAAE,YAAY,EAAE,qBAAqB,EAAE,OAAO,
|
|
1
|
+
{"version":3,"file":"docker.d.ts","sourceRoot":"","sources":["docker.ts"],"names":[],"mappings":"AAKA,OAAO,EAAC,OAAO,EAAC,MAAM,UAAU,CAAC;AAGjC,MAAM,MAAM,qBAAqB,GAAG,SAAS,GAAG,SAAS,GAAG,gBAAgB,GAAG,UAAU,GAAG,OAAO,GAAG,UAAU,CAAC;AAEjH,wBAAsB,WAAW,CAC/B,IAAI,EAAE,MAAM,EAAE,YAAY,EAAE,qBAAqB,EAAE,OAAO,EAAE,MAAM,YAAQ,EAAE,MAAM,EAAE,OAAO,GAC1F,OAAO,CAAC,IAAI,CAAC,CAwBf"}
|
package/src/utils/docker.js.map
CHANGED
|
@@ -1 +1 @@
|
|
|
1
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package/src/utils/seq-handler.js
CHANGED
|
@@ -446,7 +446,7 @@ export class SeqHandler {
|
|
|
446
446
|
return this.column.getTag(TAGS.isHelmCompatible) === 'true';
|
|
447
447
|
// get the monomer lib and check against the column
|
|
448
448
|
const monomerLibHelper = await getMonomerLibHelper();
|
|
449
|
-
const bioLib = monomerLibHelper.
|
|
449
|
+
const bioLib = monomerLibHelper.getMonomerLib();
|
|
450
450
|
// retrieve peptides
|
|
451
451
|
const peptides = bioLib.getMonomerSymbolsByType("PEPTIDE" /* HELM_POLYMER_TYPE.PEPTIDE */);
|
|
452
452
|
// convert the peptides list to a set for faster lookup
|