@datagrok-libraries/bio 5.42.3 → 5.42.4

package/CHANGELOG.md

@@ -1,5 +1,9 @@
 # bio changelog
 
+## 5.42.4 (2024-07-02)
+
+Fix types ISeqMonomer from Helm
+
 ## 5.42.3 (2024-06-26)
 
 ### Bug fixes

package/package.json

@@ -8,7 +8,7 @@
     "access": "public"
   },
   "friendlyName": "Datagrok bio library",
-  "version": "5.42.3",
+  "version": "5.42.4",
   "description": "Bio utilities, types supporting Macromolecule, Molecule3D data",
   "dependencies": {
     "@datagrok-libraries/gridext": "^1.3.71",

package/src/helm/types.d.ts

@@ -16,6 +16,10 @@ export { Atom, IJsAtom, Bond, Mol, Editor };
 export { IWebEditorMonomer, IMonomerColors, IOrgHelmWebEditor, IOrgHelmMonomers, App, Monomers, GetMonomerFunc, GetMonomerResType };
 export { DojoType, DojoxType };
 export { HweWindow, ScilModuleType, JSDraw2ModuleType, OrgType };
+export interface ISeqMonomer {
+    polymerType: PolymerType;
+    symbol: string;
+}
 export interface IHelmWebEditor {
     get editor(): Editor<HelmType>;
     get host(): HTMLDivElement;

package/src/helm/types.d.ts.map

@@ -1 +1 @@
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package/src/utils/const.d.ts

@@ -66,7 +66,7 @@ export declare const DUMMY_MONOMER: {
     rgroups: RGroup[];
     createDate: null;
     id: number;
-    polymerType: "G" | "PEPTIDE" | "RNA" | "CHEM" | "BLOB";
+    polymerType: "G" | "RNA" | "PEPTIDE" | "CHEM" | "BLOB";
     symbol: string;
 };
 export declare const MONOMER_ENCODE_MIN = 256;

package/src/utils/logger.d.ts

@@ -4,4 +4,13 @@ export interface ILogger {
     info(message: string, params?: object | undefined): void;
     debug(message: string, params?: object | undefined): void;
 }
+export declare class LoggerWrapper implements ILogger {
+    private readonly target;
+    private debugEnabled;
+    constructor(target: ILogger, debugEnabled: boolean);
+    error(message: any, params?: object | undefined, stackTrace?: string | undefined): void;
+    warning(message: string, params?: object | undefined): void;
+    info(message: string, params?: object | undefined): void;
+    debug(message: string, params?: object | undefined): void;
+}
 //# sourceMappingURL=logger.d.ts.map

package/src/utils/logger.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"logger.d.ts","sourceRoot":"","sources":["logger.ts"],"names":[],"mappings":"AAIA,MAAM,WAAW,OAAO;IACtB,KAAK,CAAC,OAAO,EAAE,GAAG,EAAE,MAAM,CAAC,EAAE,MAAM,GAAG,SAAS,EAAE,UAAU,CAAC,EAAE,MAAM,GAAG,SAAS,GAAG,IAAI,CAAC;IACxF,OAAO,CAAC,OAAO,EAAE,MAAM,EAAE,MAAM,CAAC,EAAE,MAAM,GAAG,SAAS,GAAG,IAAI,CAAC;IAC5D,IAAI,CAAC,OAAO,EAAE,MAAM,EAAE,MAAM,CAAC,EAAE,MAAM,GAAG,SAAS,GAAG,IAAI,CAAC;IACzD,KAAK,CAAC,OAAO,EAAE,MAAM,EAAE,MAAM,CAAC,EAAE,MAAM,GAAG,SAAS,GAAG,IAAI,CAAC;CAC3D;AAED,qBAAa,aAAc,YAAW,OAAO;IAEzC,OAAO,CAAC,QAAQ,CAAC,MAAM;IACvB,OAAO,CAAC,YAAY;gBADH,MAAM,EAAE,OAAO,EACxB,YAAY,EAAE,OAAO;IAG/B,KAAK,CAAC,OAAO,EAAE,GAAG,EAAE,MAAM,CAAC,EAAE,MAAM,GAAG,SAAS,EAAE,UAAU,CAAC,EAAE,MAAM,GAAG,SAAS,GAAG,IAAI;IAIvF,OAAO,CAAC,OAAO,EAAE,MAAM,EAAE,MAAM,CAAC,EAAE,MAAM,GAAG,SAAS,GAAG,IAAI;IAI3D,IAAI,CAAC,OAAO,EAAE,MAAM,EAAE,MAAM,CAAC,EAAE,MAAM,GAAG,SAAS,GAAG,IAAI;IAIxD,KAAK,CAAC,OAAO,EAAE,MAAM,EAAE,MAAM,CAAC,EAAE,MAAM,GAAG,SAAS,GAAG,IAAI;CAI1D"}

package/src/utils/logger.js

@@ -1,2 +1,20 @@
-export {};
+export class LoggerWrapper {
+    constructor(target, debugEnabled) {
+        this.target = target;
+        this.debugEnabled = debugEnabled;
+    }
+    error(message, params, stackTrace) {
+        return this.target.error(message, params, stackTrace);
+    }
+    warning(message, params) {
+        return this.target.warning(message, params);
+    }
+    info(message, params) {
+        return this.target.info(message, params);
+    }
+    debug(message, params) {
+        if (this.debugEnabled)
+            return this.target.debug(message, params);
+    }
+}
 //# sourceMappingURL=logger.js.map

package/src/utils/logger.js.map

@@ -1 +1 @@
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+{"version":3,"file":"logger.js","sourceRoot":"","sources":["logger.ts"],"names":[],"mappings":"AAWA,MAAM,OAAO,aAAa;IACxB,YACmB,MAAe,EACxB,YAAqB;QADZ,WAAM,GAAN,MAAM,CAAS;QACxB,iBAAY,GAAZ,YAAY,CAAS;IAC5B,CAAC;IAEJ,KAAK,CAAC,OAAY,EAAE,MAA2B,EAAE,UAA+B;QAC9E,OAAO,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,OAAO,EAAE,MAAM,EAAE,UAAU,CAAC,CAAC;IACxD,CAAC;IAED,OAAO,CAAC,OAAe,EAAE,MAA2B;QAClD,OAAO,IAAI,CAAC,MAAM,CAAC,OAAO,CAAC,OAAO,EAAE,MAAM,CAAC,CAAC;IAC9C,CAAC;IAED,IAAI,CAAC,OAAe,EAAE,MAA2B;QAC/C,OAAO,IAAI,CAAC,MAAM,CAAC,IAAI,CAAC,OAAO,EAAE,MAAM,CAAC,CAAC;IAC3C,CAAC;IAED,KAAK,CAAC,OAAe,EAAE,MAA2B;QAChD,IAAI,IAAI,CAAC,YAAY;YACnB,OAAO,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,OAAO,EAAE,MAAM,CAAC,CAAC;IAC9C,CAAC;CACF"}