@datagrok-libraries/bio 5.42.2 → 5.42.4
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/CHANGELOG.md +11 -0
- package/package.json +1 -1
- package/src/helm/types.d.ts +4 -0
- package/src/helm/types.d.ts.map +1 -1
- package/src/utils/cell-renderer-monomer-placer.d.ts +2 -4
- package/src/utils/cell-renderer-monomer-placer.d.ts.map +1 -1
- package/src/utils/cell-renderer-monomer-placer.js +11 -12
- package/src/utils/cell-renderer-monomer-placer.js.map +1 -1
- package/src/utils/const.d.ts +1 -1
- package/src/utils/logger.d.ts +9 -0
- package/src/utils/logger.d.ts.map +1 -1
- package/src/utils/logger.js +19 -1
- package/src/utils/logger.js.map +1 -1
package/CHANGELOG.md
CHANGED
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@@ -1,5 +1,16 @@
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# bio changelog
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## 5.42.4 (2024-07-02)
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Fix types ISeqMonomer from Helm
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## 5.42.3 (2024-06-26)
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### Bug fixes
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* GROK-15996: Fix cell renderer for long mode
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* Fix package-lock.json
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## 5.42.2 (2024-06-25)
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Bump dependencies versions JSDraw.Lite and HELMWebEditor
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package/package.json
CHANGED
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@@ -8,7 +8,7 @@
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"access": "public"
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},
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"friendlyName": "Datagrok bio library",
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"version": "5.42.
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"version": "5.42.4",
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"description": "Bio utilities, types supporting Macromolecule, Molecule3D data",
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"dependencies": {
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"@datagrok-libraries/gridext": "^1.3.71",
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package/src/helm/types.d.ts
CHANGED
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@@ -16,6 +16,10 @@ export { Atom, IJsAtom, Bond, Mol, Editor };
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export { IWebEditorMonomer, IMonomerColors, IOrgHelmWebEditor, IOrgHelmMonomers, App, Monomers, GetMonomerFunc, GetMonomerResType };
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export { DojoType, DojoxType };
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export { HweWindow, ScilModuleType, JSDraw2ModuleType, OrgType };
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export interface ISeqMonomer {
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polymerType: PolymerType;
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symbol: string;
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}
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export interface IHelmWebEditor {
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get editor(): Editor<HelmType>;
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get host(): HTMLDivElement;
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package/src/helm/types.d.ts.map
CHANGED
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@@ -1 +1 @@
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-
{"version":3,"file":"types.d.ts","sourceRoot":"","sources":["types.ts"],"names":[],"mappings":"AAIA,OAAO,KAAK,EACV,QAAQ,EAAE,WAAW,EAAE,WAAW,EAAE,iBAAiB,EAAE,gBAAgB,EAAE,cAAc,EACxF,MAAM,gDAAgD,CAAC;AAExD,OAAO,KAAK,EAAC,IAAI,EAAC,MAAM,2CAA2C,CAAC;AACpE,OAAO,KAAK,EAAC,OAAO,EAAC,MAAM,oDAAoD,CAAC;AAChF,OAAO,KAAK,EAAC,IAAI,EAAC,MAAM,2CAA2C,CAAC;AACpE,OAAO,KAAK,EAAC,GAAG,EAAC,MAAM,0CAA0C,CAAC;AAClE,OAAO,KAAK,EAAC,MAAM,EAAC,MAAM,oDAAoD,CAAC;AAE/E,OAAO,KAAK,EAAC,GAAG,EAAC,MAAM,8CAA8C,CAAC;AACtE,OAAO,KAAK,EACV,iBAAiB,EAAE,gBAAgB,EAAE,cAAc,EAAE,iBAAiB,EACvE,MAAM,wDAAwD,CAAC;AAChE,OAAO,KAAK,EAAC,SAAS,EAAC,MAAM,+CAA+C,CAAC;AAE7E,OAAO,KAAK,EAAC,iBAAiB,EAAE,cAAc,EAAC,MAAM,4CAA4C,CAAC;AAClG,OAAO,KAAK,EAAC,OAAO,EAAC,MAAM,wDAAwD,CAAC;AACpF,OAAO,KAAK,EAAC,QAAQ,EAAC,MAAM,mDAAmD,CAAC;AAChF,OAAO,KAAK,EAAC,QAAQ,EAAE,SAAS,EAAC,MAAM,iDAAiD,CAAC;AAEzF,OAAO,EAAC,QAAQ,EAAE,WAAW,EAAE,WAAW,EAAE,gBAAgB,EAAC,CAAC;AAC9D,OAAO,EAAC,IAAI,EAAE,OAAO,EAAE,IAAI,EAAE,GAAG,EAAE,MAAM,EAAC,CAAC;AAE1C,OAAO,EACL,iBAAiB,EAAE,cAAc,EAAE,iBAAiB,EAAE,gBAAgB,EAAE,GAAG,EAC3E,QAAQ,EAAE,cAAc,EAAE,iBAAiB,EAC5C,CAAC;AAEF,OAAO,EAAC,QAAQ,EAAE,SAAS,EAAC,CAAC;AAC7B,OAAO,EAAC,SAAS,EAAE,cAAc,EAAE,iBAAiB,EAAE,OAAO,EAAC,CAAC;AAG/D,MAAM,WAAW,cAAc;IAC7B,IAAI,MAAM,IAAI,MAAM,CAAC,QAAQ,CAAC,CAAC;IAC/B,IAAI,IAAI,IAAI,cAAc,CAAC;IAE3B,YAAY,CAAC,KAAK,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,GAAG,IAAI,CAAC;CACnD"}
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{"version":3,"file":"types.d.ts","sourceRoot":"","sources":["types.ts"],"names":[],"mappings":"AAIA,OAAO,KAAK,EACV,QAAQ,EAAE,WAAW,EAAE,WAAW,EAAE,iBAAiB,EAAE,gBAAgB,EAAE,cAAc,EACxF,MAAM,gDAAgD,CAAC;AAExD,OAAO,KAAK,EAAC,IAAI,EAAC,MAAM,2CAA2C,CAAC;AACpE,OAAO,KAAK,EAAC,OAAO,EAAC,MAAM,oDAAoD,CAAC;AAChF,OAAO,KAAK,EAAC,IAAI,EAAC,MAAM,2CAA2C,CAAC;AACpE,OAAO,KAAK,EAAC,GAAG,EAAC,MAAM,0CAA0C,CAAC;AAClE,OAAO,KAAK,EAAC,MAAM,EAAC,MAAM,oDAAoD,CAAC;AAE/E,OAAO,KAAK,EAAC,GAAG,EAAC,MAAM,8CAA8C,CAAC;AACtE,OAAO,KAAK,EACV,iBAAiB,EAAE,gBAAgB,EAAE,cAAc,EAAE,iBAAiB,EACvE,MAAM,wDAAwD,CAAC;AAChE,OAAO,KAAK,EAAC,SAAS,EAAC,MAAM,+CAA+C,CAAC;AAE7E,OAAO,KAAK,EAAC,iBAAiB,EAAE,cAAc,EAAC,MAAM,4CAA4C,CAAC;AAClG,OAAO,KAAK,EAAC,OAAO,EAAC,MAAM,wDAAwD,CAAC;AACpF,OAAO,KAAK,EAAC,QAAQ,EAAC,MAAM,mDAAmD,CAAC;AAChF,OAAO,KAAK,EAAC,QAAQ,EAAE,SAAS,EAAC,MAAM,iDAAiD,CAAC;AAEzF,OAAO,EAAC,QAAQ,EAAE,WAAW,EAAE,WAAW,EAAE,gBAAgB,EAAC,CAAC;AAC9D,OAAO,EAAC,IAAI,EAAE,OAAO,EAAE,IAAI,EAAE,GAAG,EAAE,MAAM,EAAC,CAAC;AAE1C,OAAO,EACL,iBAAiB,EAAE,cAAc,EAAE,iBAAiB,EAAE,gBAAgB,EAAE,GAAG,EAC3E,QAAQ,EAAE,cAAc,EAAE,iBAAiB,EAC5C,CAAC;AAEF,OAAO,EAAC,QAAQ,EAAE,SAAS,EAAC,CAAC;AAC7B,OAAO,EAAC,SAAS,EAAE,cAAc,EAAE,iBAAiB,EAAE,OAAO,EAAC,CAAC;AAG/D,MAAM,WAAW,WAAW;IAC1B,WAAW,EAAE,WAAW,CAAC;IACzB,MAAM,EAAE,MAAM,CAAC;CAChB;AAED,MAAM,WAAW,cAAc;IAC7B,IAAI,MAAM,IAAI,MAAM,CAAC,QAAQ,CAAC,CAAC;IAC/B,IAAI,IAAI,IAAI,cAAc,CAAC;IAE3B,YAAY,CAAC,KAAK,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,GAAG,IAAI,CAAC;CACnD"}
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@@ -8,10 +8,10 @@ type MonomerPlacerProps = {
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monomerCharWidth: number;
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separatorWidth: number;
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monomerToShort: MonomerToShortFunc;
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monomerLengthLimit: number;
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};
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export declare function hitBounds(bounds: number[], x: number): number | null;
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export declare class MonomerPlacer extends CellRendererBackBase<string> {
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monomerLengthLimit: number;
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private readonly propsProvider;
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private colWidth;
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private _monomerLengthList;
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@@ -19,8 +19,6 @@ export declare class MonomerPlacer extends CellRendererBackBase<string> {
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props: MonomerPlacerProps;
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private _processedRows;
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private _processedMaxVisibleSeqLength;
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private _updated;
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get updated(): boolean;
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_monomerLengthMap: {
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[key: string]: TextMetrics;
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};
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@@ -28,7 +26,7 @@ export declare class MonomerPlacer extends CellRendererBackBase<string> {
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[key: string]: HTMLElement;
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};
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/** View is required to subscribe and handle for data frame changes */
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constructor(gridCol: DG.GridColumn | null, tableCol: DG.Column<string>, logger: ILogger, propsProvider: () => MonomerPlacerProps);
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constructor(gridCol: DG.GridColumn | null, tableCol: DG.Column<string>, logger: ILogger, monomerLengthLimit: number, propsProvider: () => MonomerPlacerProps);
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protected reset(): void;
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/** Returns monomers lengths of the {@link rowIdx} and cumulative sums for borders, monomer places */
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getCellMonomerLengths(rowIdx: number, newWidth: number): [number[], number[]];
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{"version":3,"file":"cell-renderer-monomer-placer.d.ts","sourceRoot":"","sources":["cell-renderer-monomer-placer.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAItC,OAAO,EAAC,UAAU,EAAC,MAAM,eAAe,CAAC;AACzC,OAAO,EAAC,kBAAkB,EAAC,MAAM,iBAAiB,CAAC;AAEnD,OAAO,EAAC,oBAAoB,EAAC,MAAM,2BAA2B,CAAC;AAC/D,OAAO,EAAC,OAAO,EAAC,MAAM,UAAU,CAAC;AAGjC,KAAK,kBAAkB,GAAG;IACxB,UAAU,EAAE,UAAU,CAAC;IACvB,gBAAgB,EAAE,MAAM,CAAC;IAAC,cAAc,EAAE,MAAM,CAAC;IACjD,cAAc,EAAE,kBAAkB,
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{"version":3,"file":"cell-renderer-monomer-placer.d.ts","sourceRoot":"","sources":["cell-renderer-monomer-placer.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAItC,OAAO,EAAC,UAAU,EAAC,MAAM,eAAe,CAAC;AACzC,OAAO,EAAC,kBAAkB,EAAC,MAAM,iBAAiB,CAAC;AAEnD,OAAO,EAAC,oBAAoB,EAAC,MAAM,2BAA2B,CAAC;AAC/D,OAAO,EAAC,OAAO,EAAC,MAAM,UAAU,CAAC;AAGjC,KAAK,kBAAkB,GAAG;IACxB,UAAU,EAAE,UAAU,CAAC;IACvB,gBAAgB,EAAE,MAAM,CAAC;IAAC,cAAc,EAAE,MAAM,CAAC;IACjD,cAAc,EAAE,kBAAkB,CAAA;CACnC,CAAC;AAEF,wBAAgB,SAAS,CAAC,MAAM,EAAE,MAAM,EAAE,EAAE,CAAC,EAAE,MAAM,GAAG,MAAM,GAAG,IAAI,CAoBpE;AAED,qBAAa,aAAc,SAAQ,oBAAoB,CAAC,MAAM,CAAC;IAkBpD,kBAAkB,EAAE,MAAM;IACjC,OAAO,CAAC,QAAQ,CAAC,aAAa;IAlBhC,OAAO,CAAC,QAAQ,CAAa;IAC7B,OAAO,CAAC,kBAAkB,CAA2B;IAGrD,OAAO,CAAC,cAAc,CAAK;IACpB,KAAK,EAAE,kBAAkB,CAAC;IACjC,OAAO,CAAC,cAAc,CAAY;IAClC,OAAO,CAAC,6BAA6B,CAAa;IAE3C,iBAAiB,EAAE;QAAE,CAAC,GAAG,EAAE,MAAM,GAAG,WAAW,CAAA;KAAE,CAAM;IACvD,oBAAoB,EAAE;QAAE,CAAC,GAAG,EAAE,MAAM,GAAG,WAAW,CAAA;KAAE,CAAM;IAEjE,sEAAsE;gBAEpE,OAAO,EAAE,EAAE,CAAC,UAAU,GAAG,IAAI,EAC7B,QAAQ,EAAE,EAAE,CAAC,MAAM,CAAC,MAAM,CAAC,EAC3B,MAAM,EAAE,OAAO,EACR,kBAAkB,EAAE,MAAM,EAChB,aAAa,EAAE,MAAM,kBAAkB;cAsBvC,KAAK,IAAI,IAAI;IAQhC,qGAAqG;IAC9F,qBAAqB,CAAC,MAAM,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,CAAC,MAAM,EAAE,EAAE,MAAM,EAAE,CAAC;IAepF,OAAO,CAAC,2BAA2B;IA+BnC,OAAO,CAAC,8BAA8B;IAmDtC,yCAAyC;IAClC,WAAW,CAAC,MAAM,EAAE,MAAM,EAAE,CAAC,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM,GAAG,MAAM,GAAG,IAAI;IASpE,qBAAqB,CAAC,KAAK,EAAE,MAAM,GAAG,IAAI;IAK1C,iBAAiB,CAAC,KAAK,EAAE,MAAM,GAAG,IAAI;IAKtC,KAAK,IAAI,OAAO;CAGxB"}
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return null;
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}
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export class MonomerPlacer extends CellRendererBackBase {
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get updated() { return this._updated; }
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/** View is required to subscribe and handle for data frame changes */
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constructor(gridCol, tableCol, logger, propsProvider) {
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constructor(gridCol, tableCol, logger, monomerLengthLimit, propsProvider) {
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super(gridCol, tableCol, logger);
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this.monomerLengthLimit = monomerLengthLimit;
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this.propsProvider = propsProvider;
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this.colWidth = 0;
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this._monomerLengthList = null;
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// width of separator symbol
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this.separatorWidth = 5;
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this._processedMaxVisibleSeqLength = 0;
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this._updated = false;
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this._monomerLengthMap = {}; // caches the lengths to save time on g.measureText
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this._monomerStructureMap = {}; // caches the atomic structures of monomers
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this.props = this.propsProvider();
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return [res, resSum];
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}
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getCellMonomerLengthsForSeq(rowIdx) {
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const logPrefix = `${this.toLog()}.getCellMonomerLengthsForSeqMsa()`;
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// this.logger.debug(`${logPrefix}, start`);
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if (this._monomerLengthList === null) {
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this._monomerLengthList = new Array(this.tableCol.length).fill(null);
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this._updated = true;
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}
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const minMonWidth = this.props.separatorWidth + 1 * this.props.monomerCharWidth;
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const maxVisibleSeqLength = Math.ceil(this.colWidth / minMonWidth);
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let seqWidth = 0;
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for (let seqMonI = 0; seqMonI < visibleSeqLength; ++seqMonI) {
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const seqMonLabel = seqMonList[seqMonI];
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const shortMon = this.props.monomerToShort(seqMonLabel, this.
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const shortMon = this.props.monomerToShort(seqMonLabel, this.monomerLengthLimit);
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const separatorWidth = this.props.seqHandler.isSeparator() ? this.separatorWidth : this.props.separatorWidth;
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const seqMonWidth = separatorWidth + shortMon.length * this.props.monomerCharWidth;
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res[seqMonI] = seqMonWidth;
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if (seqWidth > this.colWidth)
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break;
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}
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this._updated = true;
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}
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return res;
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}
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getCellMonomerLengthsForSeqMsa() {
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var _a;
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const logPrefix = `${this.toLog()}.getCellMonomerLengthsForSeqMsa()`;
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// this.logger.debug(`${logPrefix}, start`);
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if (this._monomerLengthList === null) {
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this._monomerLengthList = new Array(1).fill(null);
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this._updated = true;
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}
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(_a = this._monomerLengthList)[0] ?? (_a[0] = new Array(0));
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const res = this._monomerLengthList[0];
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@@ -142,14 +142,13 @@ export class MonomerPlacer extends CellRendererBackBase {
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let seqWidth = 0;
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for (let seqMonI = 0; seqMonI < visibleSeqLength; ++seqMonI) {
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const seqMonLabel = seqMonList[seqMonI];
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const shortMon = this.props.monomerToShort(seqMonLabel, this.
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const shortMon = this.props.monomerToShort(seqMonLabel, this.monomerLengthLimit);
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const seqMonWidth = this.props.separatorWidth + shortMon.length * this.props.monomerCharWidth;
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res[seqMonI] = Math.max(res[seqMonI] ?? 0, seqMonWidth);
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seqWidth += seqMonWidth;
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if (seqWidth >= this.colWidth)
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break;
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}
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this._updated = true;
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this._processedMaxVisibleSeqLength = Math.max(this._processedMaxVisibleSeqLength, maxVisibleSeqLength);
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}
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return res; // first (and single) row of data
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@@ -164,12 +163,12 @@ export class MonomerPlacer extends CellRendererBackBase {
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return hitBounds(monomerMaxLengthSumList, x);
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}
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setMonomerLengthLimit(limit) {
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this.
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this.
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this.monomerLengthLimit = limit;
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this.reset();
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}
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setSeparatorWidth(width) {
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this.props.separatorWidth = width;
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this.
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this.reset();
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}
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isMsa() {
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return this.props.seqHandler.isMsa();
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|
-
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|
|
1
|
+
{"version":3,"file":"cell-renderer-monomer-placer.js","sourceRoot":"","sources":["cell-renderer-monomer-placer.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAEtC,OAAO,EAAE,MAAM,IAAI,CAAC;AAEpB,OAAO,EAAC,UAAU,EAAC,MAAM,eAAe,CAAC;AAGzC,OAAO,EAAC,oBAAoB,EAAC,MAAM,2BAA2B,CAAC;AAE/D,OAAO,EAAC,mBAAmB,EAAC,MAAM,gCAAgC,CAAC;AAQnE,MAAM,UAAU,SAAS,CAAC,MAAgB,EAAE,CAAS;IACnD,IAAI,cAAc,GAAW,GAAG,CAAC;IACjC,IAAI,KAAK,GAAW,CAAC,CAAC;IACtB,IAAI,MAAM,GAAG,MAAM,CAAC,MAAM,GAAG,CAAC,CAAC;IAC/B,IAAI,IAAI,CAAC;IACT,OAAO,KAAK,IAAI,MAAM,EAAE;QACtB,IAAI,GAAG,IAAI,CAAC,KAAK,CAAC,CAAC,MAAM,GAAG,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC;QACxC,IAAI,MAAM,CAAC,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,GAAG,MAAM,CAAC,IAAI,GAAG,CAAC,CAAC;YAC3C,OAAO,IAAI,CAAC;aACT,IAAI,CAAC,GAAG,MAAM,CAAC,IAAI,CAAC;YACvB,MAAM,GAAG,IAAI,GAAG,CAAC,CAAC;aACf,gCAAgC;YACnC,KAAK,GAAG,IAAI,GAAG,CAAC,CAAC;QAEnB,IAAI,EAAE,cAAc,IAAI,CAAC,EAAE;YACzB,MAAM,IAAI,KAAK,CAAC,gCAAgC,CAAC,+BAA+B;gBAC9E,MAAM,IAAI,CAAC,SAAS,CAAC,MAAM,CAAC,IAAI,CAAC,CAAC;SACrC;KACF;IACD,OAAO,IAAI,CAAC;AACd,CAAC;AAED,MAAM,OAAO,aAAc,SAAQ,oBAA4B;IAa7D,sEAAsE;IACtE,YACE,OAA6B,EAC7B,QAA2B,EAC3B,MAAe,EACR,kBAA0B,EAChB,aAAuC;QAExD,KAAK,CAAC,OAAO,EAAE,QAAQ,EAAE,MAAM,CAAC,CAAC;QAH1B,uBAAkB,GAAlB,kBAAkB,CAAQ;QAChB,kBAAa,GAAb,aAAa,CAA0B;QAlBlD,aAAQ,GAAW,CAAC,CAAC;QACrB,uBAAkB,GAAsB,IAAI,CAAC;QAErD,4BAA4B;QACpB,mBAAc,GAAG,CAAC,CAAC;QAGnB,kCAA6B,GAAW,CAAC,CAAC;QAE3C,sBAAiB,GAAmC,EAAE,CAAC,CAAC,mDAAmD;QAC3G,yBAAoB,GAAmC,EAAE,CAAC,CAAC,2CAA2C;QAW3G,IAAI,CAAC,KAAK,GAAG,IAAI,CAAC,aAAa,EAAE,CAAC;QAClC,IAAI,CAAC,cAAc,GAAG,EAAE,CAAC,MAAM,CAAC,MAAM,CAAC,IAAI,CAAC,QAAS,CAAC,MAAM,CAAC,CAAC;QAE9D,IAAI,IAAI,CAAC,OAAO,EAAE;YAChB,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,OAAO,CAAC,IAAI,CAAC,kBAAkB,CAAC,SAAS,CAAC,GAAG,EAAE;gBACjE,IAAI,CAAC,WAAW,CAAC,IAAI,EAAE,CAAC;YAC1B,CAAC,CAAC,CAAC,CAAC;SACL;QAED,mBAAmB,EAAE,CAAC,IAAI,CAAC,CAAC,SAAS,EAAE,EAAE;YACvC,IAAI,IAAI,CAAC,SAAS;gBAAE,OAAO;YAC3B,MAAM,UAAU,GAAG,SAAS,CAAC,SAAS,EAAE,CAAC;YACzC,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,UAAU,CAAC,SAAS,CAAC,SAAS,CAAC,GAAG,EAAE;gBACjD,IAAI,CAAC,KAAK,EAAE,CAAC;gBACb,IAAI,CAAC,OAAO,EAAE,IAAI,EAAE,UAAU,EAAE,CAAC;YACnC,CAAC,CAAC,CAAC,CAAC;QACN,CAAC,CAAC,CAAC;IACL,CAAC;IAEkB,KAAK;QACtB,IAAI,IAAI,CAAC,aAAa;YAAE,IAAI,CAAC,KAAK,GAAG,IAAI,CAAC,aAAa,EAAE,CAAC;QAC1D,IAAI,CAAC,cAAc,GAAG,EAAE,CAAC,MAAM,CAAC,MAAM,CAAC,IAAI,CAAC,QAAS,CAAC,MAAM,CAAC,CAAC;QAC9D,IAAI,CAAC,kBAAkB,GAAG,IAAI,CAAC;QAC/B,IAAI,CAAC,iBAAiB,GAAG,EAAE,CAAC;QAC5B,IAAI,CAAC,oBAAoB,GAAG,EAAE,CAAC;IACjC,CAAC;IAED,qGAAqG;IAC9F,qBAAqB,CAAC,MAAc,EAAE,QAAgB;QAC3D,IAAI,IAAI,CAAC,QAAQ,GAAG,QAAQ,EAAE;YAC5B,IAAI,CAAC,QAAQ,GAAG,QAAQ,CAAC;YACzB,IAAI,CAAC,KAAK,EAAE,CAAC;SACd;QACD,MAAM,GAAG,GAAa,IAAI,CAAC,KAAK,CAAC,UAAU,CAAC,KAAK,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,8BAA8B,EAAE,CAAC,CAAC;YAC3F,IAAI,CAAC,2BAA2B,CAAC,MAAM,CAAC,CAAC;QAE3C,MAAM,MAAM,GAAa,IAAI,KAAK,CAAS,GAAG,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC;QAC3D,MAAM,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,UAAU;QACzB,KAAK,IAAI,GAAG,GAAW,CAAC,EAAE,GAAG,GAAG,MAAM,CAAC,MAAM,EAAE,GAAG,EAAE;YAClD,MAAM,CAAC,GAAG,CAAC,GAAG,MAAM,CAAC,GAAG,GAAG,CAAC,CAAC,GAAG,GAAG,CAAC,GAAG,GAAG,CAAC,CAAC,CAAC;QAC/C,OAAO,CAAC,GAAG,EAAE,MAAM,CAAC,CAAC;IACvB,CAAC;IAEO,2BAA2B,CAAC,MAAc;QAChD,MAAM,SAAS,GAAG,GAAG,IAAI,CAAC,KAAK,EAAE,mCAAmC,CAAC;QACrE,4CAA4C;QAE5C,IAAI,IAAI,CAAC,kBAAkB,KAAK,IAAI,EAAE;YACpC,IAAI,CAAC,kBAAkB,GAAG,IAAI,KAAK,CAAC,IAAI,CAAC,QAAQ,CAAC,MAAM,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;SACtE;QAED,MAAM,WAAW,GAAG,IAAI,CAAC,KAAK,CAAC,cAAc,GAAG,CAAC,GAAG,IAAI,CAAC,KAAK,CAAC,gBAAgB,CAAC;QAChF,MAAM,mBAAmB,GAAW,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,QAAQ,GAAG,WAAW,CAAC,CAAC;QAC3E,MAAM,UAAU,GAAoB,UAAU,CAAC,SAAS,CAAC,IAAI,CAAC,QAAQ,CAAC,CAAC,WAAW,CAAC,MAAM,CAAC,CAAC,SAAS,CAAC;QACtG,MAAM,gBAAgB,GAAW,IAAI,CAAC,GAAG,CAAC,mBAAmB,EAAE,UAAU,CAAC,MAAM,CAAC,CAAC;QAElF,IAAI,GAAG,GAAa,IAAI,CAAC,kBAAkB,CAAC,MAAM,CAAC,CAAC;QACpD,IAAI,GAAG,KAAK,IAAI,IAAI,GAAG,CAAC,MAAM,GAAG,gBAAgB,EAAE;YACjD,GAAG,GAAG,IAAI,CAAC,kBAAkB,CAAC,MAAM,CAAC,GAAG,IAAI,KAAK,CAAS,UAAU,CAAC,MAAM,CAAC,CAAC;YAE7E,IAAI,QAAQ,GAAW,CAAC,CAAC;YACzB,KAAK,IAAI,OAAO,GAAG,CAAC,EAAE,OAAO,GAAG,gBAAgB,EAAE,EAAE,OAAO,EAAE;gBAC3D,MAAM,WAAW,GAAG,UAAU,CAAC,OAAO,CAAC,CAAC;gBACxC,MAAM,QAAQ,GAAW,IAAI,CAAC,KAAK,CAAC,cAAc,CAAC,WAAW,EAAE,IAAI,CAAC,kBAAkB,CAAC,CAAC;gBACzF,MAAM,cAAc,GAAG,IAAI,CAAC,KAAK,CAAC,UAAU,CAAC,WAAW,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,cAAc,CAAC,CAAC,CAAC,IAAI,CAAC,KAAK,CAAC,cAAc,CAAC;gBAC7G,MAAM,WAAW,GAAW,cAAc,GAAG,QAAQ,CAAC,MAAM,GAAG,IAAI,CAAC,KAAK,CAAC,gBAAgB,CAAC;gBAC3F,GAAG,CAAC,OAAO,CAAC,GAAG,WAAW,CAAC;gBAC3B,QAAQ,IAAI,WAAW,CAAC;gBACxB,IAAI,QAAQ,GAAG,IAAI,CAAC,QAAQ;oBAAE,MAAM;aACrC;SACF;QACD,OAAO,GAAG,CAAC;IACb,CAAC;IAEO,8BAA8B;;QACpC,MAAM,SAAS,GAAG,GAAG,IAAI,CAAC,KAAK,EAAE,mCAAmC,CAAC;QACrE,4CAA4C;QAC5C,IAAI,IAAI,CAAC,kBAAkB,KAAK,IAAI,EAAE;YACpC,IAAI,CAAC,kBAAkB,GAAG,IAAI,KAAK,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;SACnD;QACD,MAAA,IAAI,CAAC,kBAAkB,EAAC,CAAC,SAAD,CAAC,IAAM,IAAI,KAAK,CAAC,CAAC,CAAC,EAAC;QAC5C,MAAM,GAAG,GAAG,IAAI,CAAC,kBAAkB,CAAC,CAAC,CAAC,CAAC;QACvC,mFAAmF;QACnF,8FAA8F;QAE9F,MAAM,EAAC,QAAQ,EAAE,MAAM,EAAC,GAAG,CAAC,GAAG,EAAE;YAC/B,IAAI;gBAC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|
package/src/utils/const.d.ts
CHANGED
|
@@ -66,7 +66,7 @@ export declare const DUMMY_MONOMER: {
|
|
|
66
66
|
rgroups: RGroup[];
|
|
67
67
|
createDate: null;
|
|
68
68
|
id: number;
|
|
69
|
-
polymerType: "G" | "
|
|
69
|
+
polymerType: "G" | "RNA" | "PEPTIDE" | "CHEM" | "BLOB";
|
|
70
70
|
symbol: string;
|
|
71
71
|
};
|
|
72
72
|
export declare const MONOMER_ENCODE_MIN = 256;
|
package/src/utils/logger.d.ts
CHANGED
|
@@ -4,4 +4,13 @@ export interface ILogger {
|
|
|
4
4
|
info(message: string, params?: object | undefined): void;
|
|
5
5
|
debug(message: string, params?: object | undefined): void;
|
|
6
6
|
}
|
|
7
|
+
export declare class LoggerWrapper implements ILogger {
|
|
8
|
+
private readonly target;
|
|
9
|
+
private debugEnabled;
|
|
10
|
+
constructor(target: ILogger, debugEnabled: boolean);
|
|
11
|
+
error(message: any, params?: object | undefined, stackTrace?: string | undefined): void;
|
|
12
|
+
warning(message: string, params?: object | undefined): void;
|
|
13
|
+
info(message: string, params?: object | undefined): void;
|
|
14
|
+
debug(message: string, params?: object | undefined): void;
|
|
15
|
+
}
|
|
7
16
|
//# sourceMappingURL=logger.d.ts.map
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"logger.d.ts","sourceRoot":"","sources":["logger.ts"],"names":[],"mappings":"AAIA,MAAM,WAAW,OAAO;IACtB,KAAK,CAAC,OAAO,EAAE,GAAG,EAAE,MAAM,CAAC,EAAE,MAAM,GAAG,SAAS,EAAE,UAAU,CAAC,EAAE,MAAM,GAAG,SAAS,GAAG,IAAI,CAAC;IACxF,OAAO,CAAC,OAAO,EAAE,MAAM,EAAE,MAAM,CAAC,EAAE,MAAM,GAAG,SAAS,GAAG,IAAI,CAAC;IAC5D,IAAI,CAAC,OAAO,EAAE,MAAM,EAAE,MAAM,CAAC,EAAE,MAAM,GAAG,SAAS,GAAG,IAAI,CAAC;IACzD,KAAK,CAAC,OAAO,EAAE,MAAM,EAAE,MAAM,CAAC,EAAE,MAAM,GAAG,SAAS,GAAG,IAAI,CAAC;CAC3D"}
|
|
1
|
+
{"version":3,"file":"logger.d.ts","sourceRoot":"","sources":["logger.ts"],"names":[],"mappings":"AAIA,MAAM,WAAW,OAAO;IACtB,KAAK,CAAC,OAAO,EAAE,GAAG,EAAE,MAAM,CAAC,EAAE,MAAM,GAAG,SAAS,EAAE,UAAU,CAAC,EAAE,MAAM,GAAG,SAAS,GAAG,IAAI,CAAC;IACxF,OAAO,CAAC,OAAO,EAAE,MAAM,EAAE,MAAM,CAAC,EAAE,MAAM,GAAG,SAAS,GAAG,IAAI,CAAC;IAC5D,IAAI,CAAC,OAAO,EAAE,MAAM,EAAE,MAAM,CAAC,EAAE,MAAM,GAAG,SAAS,GAAG,IAAI,CAAC;IACzD,KAAK,CAAC,OAAO,EAAE,MAAM,EAAE,MAAM,CAAC,EAAE,MAAM,GAAG,SAAS,GAAG,IAAI,CAAC;CAC3D;AAED,qBAAa,aAAc,YAAW,OAAO;IAEzC,OAAO,CAAC,QAAQ,CAAC,MAAM;IACvB,OAAO,CAAC,YAAY;gBADH,MAAM,EAAE,OAAO,EACxB,YAAY,EAAE,OAAO;IAG/B,KAAK,CAAC,OAAO,EAAE,GAAG,EAAE,MAAM,CAAC,EAAE,MAAM,GAAG,SAAS,EAAE,UAAU,CAAC,EAAE,MAAM,GAAG,SAAS,GAAG,IAAI;IAIvF,OAAO,CAAC,OAAO,EAAE,MAAM,EAAE,MAAM,CAAC,EAAE,MAAM,GAAG,SAAS,GAAG,IAAI;IAI3D,IAAI,CAAC,OAAO,EAAE,MAAM,EAAE,MAAM,CAAC,EAAE,MAAM,GAAG,SAAS,GAAG,IAAI;IAIxD,KAAK,CAAC,OAAO,EAAE,MAAM,EAAE,MAAM,CAAC,EAAE,MAAM,GAAG,SAAS,GAAG,IAAI;CAI1D"}
|
package/src/utils/logger.js
CHANGED
|
@@ -1,2 +1,20 @@
|
|
|
1
|
-
export {
|
|
1
|
+
export class LoggerWrapper {
|
|
2
|
+
constructor(target, debugEnabled) {
|
|
3
|
+
this.target = target;
|
|
4
|
+
this.debugEnabled = debugEnabled;
|
|
5
|
+
}
|
|
6
|
+
error(message, params, stackTrace) {
|
|
7
|
+
return this.target.error(message, params, stackTrace);
|
|
8
|
+
}
|
|
9
|
+
warning(message, params) {
|
|
10
|
+
return this.target.warning(message, params);
|
|
11
|
+
}
|
|
12
|
+
info(message, params) {
|
|
13
|
+
return this.target.info(message, params);
|
|
14
|
+
}
|
|
15
|
+
debug(message, params) {
|
|
16
|
+
if (this.debugEnabled)
|
|
17
|
+
return this.target.debug(message, params);
|
|
18
|
+
}
|
|
19
|
+
}
|
|
2
20
|
//# sourceMappingURL=logger.js.map
|
package/src/utils/logger.js.map
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"logger.js","sourceRoot":"","sources":["logger.ts"],"names":[],"mappings":""}
|
|
1
|
+
{"version":3,"file":"logger.js","sourceRoot":"","sources":["logger.ts"],"names":[],"mappings":"AAWA,MAAM,OAAO,aAAa;IACxB,YACmB,MAAe,EACxB,YAAqB;QADZ,WAAM,GAAN,MAAM,CAAS;QACxB,iBAAY,GAAZ,YAAY,CAAS;IAC5B,CAAC;IAEJ,KAAK,CAAC,OAAY,EAAE,MAA2B,EAAE,UAA+B;QAC9E,OAAO,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,OAAO,EAAE,MAAM,EAAE,UAAU,CAAC,CAAC;IACxD,CAAC;IAED,OAAO,CAAC,OAAe,EAAE,MAA2B;QAClD,OAAO,IAAI,CAAC,MAAM,CAAC,OAAO,CAAC,OAAO,EAAE,MAAM,CAAC,CAAC;IAC9C,CAAC;IAED,IAAI,CAAC,OAAe,EAAE,MAA2B;QAC/C,OAAO,IAAI,CAAC,MAAM,CAAC,IAAI,CAAC,OAAO,EAAE,MAAM,CAAC,CAAC;IAC3C,CAAC;IAED,KAAK,CAAC,OAAe,EAAE,MAA2B;QAChD,IAAI,IAAI,CAAC,YAAY;YACnB,OAAO,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,OAAO,EAAE,MAAM,CAAC,CAAC;IAC9C,CAAC;CACF"}
|