@datagrok-libraries/bio 5.42.1 → 5.42.3
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/CHANGELOG.md +11 -0
- package/package.json +3 -3
- package/src/helm/helm-helper.d.ts +2 -3
- package/src/helm/helm-helper.d.ts.map +1 -1
- package/src/helm/helm-helper.js.map +1 -1
- package/src/helm/types.d.ts +2 -2
- package/src/helm/types.d.ts.map +1 -1
- package/src/utils/cell-renderer-monomer-placer.d.ts +2 -4
- package/src/utils/cell-renderer-monomer-placer.d.ts.map +1 -1
- package/src/utils/cell-renderer-monomer-placer.js +11 -12
- package/src/utils/cell-renderer-monomer-placer.js.map +1 -1
- package/src/utils/cell-renderer.d.ts +28 -22
- package/src/utils/cell-renderer.d.ts.map +1 -1
- package/src/utils/cell-renderer.js +59 -49
- package/src/utils/cell-renderer.js.map +1 -1
- package/src/package.d.ts +0 -1
- package/src/package.d.ts.map +0 -1
- package/src/package.js +0 -2
- package/src/package.js.map +0 -1
package/CHANGELOG.md
CHANGED
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@@ -1,5 +1,16 @@
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# bio changelog
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## 5.42.3 (2024-06-26)
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### Bug fixes
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* GROK-15996: Fix cell renderer for long mode
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* Fix package-lock.json
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## 5.42.2 (2024-06-25)
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Bump dependencies versions JSDraw.Lite and HELMWebEditor
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## 5.42.1 (2024-06-24)
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Fix for JSDraw types
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package/package.json
CHANGED
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@@ -8,7 +8,7 @@
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"access": "public"
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},
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"friendlyName": "Datagrok bio library",
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"version": "5.42.
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"version": "5.42.3",
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"description": "Bio utilities, types supporting Macromolecule, Molecule3D data",
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"dependencies": {
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"@datagrok-libraries/gridext": "^1.3.71",
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"wu": "latest"
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},
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"devDependencies": {
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"@datagrok-libraries/helm-web-editor": "^1.1.
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-
"@datagrok-libraries/js-draw-lite": "^0.0.
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"@datagrok-libraries/helm-web-editor": "^1.1.5",
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"@datagrok-libraries/js-draw-lite": "^0.0.3",
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"@types/signals": "1.0.1",
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"@types/three": "^0.159.0",
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"@types/uuid": "^9.0.1",
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@@ -1,8 +1,7 @@
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import type { App } from '@datagrok-libraries/helm-web-editor/helm/App';
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import {
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import { IHelmWebEditor } from './types';
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import { IMonomerLib } from '../types/index';
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export type GetMonomerFunc = (a: Atom<HelmType> | HelmType, name?: string) => GetMonomerResType;
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import { GetMonomerFunc } from '../helm/types';
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export interface IHelmHelper {
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createHelmWebEditor(): IHelmWebEditor;
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createWebEditorApp(host: HTMLDivElement, helm?: string): App;
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@@ -1 +1 @@
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{"version":3,"file":"helm-helper.d.ts","sourceRoot":"","sources":["helm-helper.ts"],"names":[],"mappings":"AAIA,OAAO,KAAK,EAAC,GAAG,EAAC,MAAM,8CAA8C,CAAC;AACtE,OAAO,
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{"version":3,"file":"helm-helper.d.ts","sourceRoot":"","sources":["helm-helper.ts"],"names":[],"mappings":"AAIA,OAAO,KAAK,EAAC,GAAG,EAAC,MAAM,8CAA8C,CAAC;AACtE,OAAO,EAAiB,cAAc,EAAoB,MAAM,SAAS,CAAC;AAC1E,OAAO,EAAC,WAAW,EAAC,MAAM,gBAAgB,CAAC;AAC3C,OAAO,EAAC,cAAc,EAAC,MAAM,eAAe,CAAC;AAG7C,MAAM,WAAW,WAAW;IAC1B,mBAAmB,IAAI,cAAc,CAAC;IAEtC,kBAAkB,CAAC,IAAI,EAAE,cAAc,EAAE,IAAI,CAAC,EAAE,MAAM,GAAG,GAAG,CAAC;IAE7D,IAAI,kBAAkB,IAAI,cAAc,GAAG,IAAI,CAAC;IAEhD,sBAAsB,CAAC,UAAU,EAAE,WAAW,GAAG,cAAc,CAAC;IAChE,kBAAkB,CAAC,cAAc,EAAE,cAAc,GAAG,cAAc,CAAC;IACnE,wBAAwB,IAAI,cAAc,CAAC;CAC5C;AAED,wBAAsB,aAAa,IAAI,OAAO,CAAC,WAAW,CAAC,CAO1D"}
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{"version":3,"file":"helm-helper.js","sourceRoot":"","sources":["helm-helper.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;
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{"version":3,"file":"helm-helper.js","sourceRoot":"","sources":["helm-helper.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAqBtC,MAAM,CAAC,KAAK,UAAU,aAAa;IACjC,MAAM,WAAW,GAAG,MAAM,CAAC;IAC3B,MAAM,QAAQ,GAAG,EAAE,CAAC,IAAI,CAAC,IAAI,CAAC,EAAC,OAAO,EAAE,WAAW,EAAE,IAAI,EAAE,eAAe,EAAC,CAAC,CAAC;IAC7E,IAAI,QAAQ,CAAC,MAAM,KAAK,CAAC;QACvB,MAAM,IAAI,KAAK,CAAC,YAAY,WAAW,qCAAqC,CAAC,CAAC;IAChF,MAAM,GAAG,GAAG,CAAC,MAAM,QAAQ,CAAC,CAAC,CAAC,CAAC,OAAO,EAAE,CAAC,IAAI,EAAE,CAAC,CAAC,mBAAmB,EAAiB,CAAC;IACtF,OAAO,GAAG,CAAC;AACb,CAAC"}
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package/src/helm/types.d.ts
CHANGED
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@@ -5,7 +5,7 @@ import type { Bond } from '@datagrok-libraries/js-draw-lite/src/Bond';
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import type { Mol } from '@datagrok-libraries/js-draw-lite/src/Mol';
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import type { Editor } from '@datagrok-libraries/js-draw-lite/src/JSDraw.Editor';
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import type { App } from '@datagrok-libraries/helm-web-editor/helm/App';
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import type { IOrgHelmWebEditor, IOrgHelmMonomers } from '@datagrok-libraries/helm-web-editor/src/types/org-helm';
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import type { IOrgHelmWebEditor, IOrgHelmMonomers, GetMonomerFunc, GetMonomerResType } from '@datagrok-libraries/helm-web-editor/src/types/org-helm';
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import type { HweWindow } from '@datagrok-libraries/helm-web-editor/src/types';
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import type { JSDraw2ModuleType, ScilModuleType } from '@datagrok-libraries/js-draw-lite/src/types';
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import type { OrgType } from '@datagrok-libraries/helm-web-editor/src/types/org-helm';
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import type { DojoType, DojoxType } from '@datagrok-libraries/js-draw-lite/src/types/dojo';
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export { HelmType, PolymerType, MonomerType, WebEditorRGroups };
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export { Atom, IJsAtom, Bond, Mol, Editor };
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export { IWebEditorMonomer, IMonomerColors, IOrgHelmWebEditor, IOrgHelmMonomers, App, Monomers };
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export { IWebEditorMonomer, IMonomerColors, IOrgHelmWebEditor, IOrgHelmMonomers, App, Monomers, GetMonomerFunc, GetMonomerResType };
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export { DojoType, DojoxType };
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export { HweWindow, ScilModuleType, JSDraw2ModuleType, OrgType };
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export interface IHelmWebEditor {
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package/src/helm/types.d.ts.map
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{"version":3,"file":"types.d.ts","sourceRoot":"","sources":["types.ts"],"names":[],"mappings":"AAIA,OAAO,KAAK,EACV,QAAQ,EAAE,WAAW,EAAE,WAAW,EAAE,iBAAiB,EAAE,gBAAgB,EAAE,cAAc,EACxF,MAAM,gDAAgD,CAAC;AAExD,OAAO,KAAK,EAAC,IAAI,EAAC,MAAM,2CAA2C,CAAC;AACpE,OAAO,KAAK,EAAC,OAAO,EAAC,MAAM,oDAAoD,CAAC;AAChF,OAAO,KAAK,EAAC,IAAI,EAAC,MAAM,2CAA2C,CAAC;AACpE,OAAO,KAAK,EAAC,GAAG,EAAC,MAAM,0CAA0C,CAAC;AAClE,OAAO,KAAK,EAAC,MAAM,EAAC,MAAM,oDAAoD,CAAC;AAE/E,OAAO,KAAK,EAAC,GAAG,EAAC,MAAM,8CAA8C,CAAC;AACtE,OAAO,KAAK,
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{"version":3,"file":"types.d.ts","sourceRoot":"","sources":["types.ts"],"names":[],"mappings":"AAIA,OAAO,KAAK,EACV,QAAQ,EAAE,WAAW,EAAE,WAAW,EAAE,iBAAiB,EAAE,gBAAgB,EAAE,cAAc,EACxF,MAAM,gDAAgD,CAAC;AAExD,OAAO,KAAK,EAAC,IAAI,EAAC,MAAM,2CAA2C,CAAC;AACpE,OAAO,KAAK,EAAC,OAAO,EAAC,MAAM,oDAAoD,CAAC;AAChF,OAAO,KAAK,EAAC,IAAI,EAAC,MAAM,2CAA2C,CAAC;AACpE,OAAO,KAAK,EAAC,GAAG,EAAC,MAAM,0CAA0C,CAAC;AAClE,OAAO,KAAK,EAAC,MAAM,EAAC,MAAM,oDAAoD,CAAC;AAE/E,OAAO,KAAK,EAAC,GAAG,EAAC,MAAM,8CAA8C,CAAC;AACtE,OAAO,KAAK,EACV,iBAAiB,EAAE,gBAAgB,EAAE,cAAc,EAAE,iBAAiB,EACvE,MAAM,wDAAwD,CAAC;AAChE,OAAO,KAAK,EAAC,SAAS,EAAC,MAAM,+CAA+C,CAAC;AAE7E,OAAO,KAAK,EAAC,iBAAiB,EAAE,cAAc,EAAC,MAAM,4CAA4C,CAAC;AAClG,OAAO,KAAK,EAAC,OAAO,EAAC,MAAM,wDAAwD,CAAC;AACpF,OAAO,KAAK,EAAC,QAAQ,EAAC,MAAM,mDAAmD,CAAC;AAChF,OAAO,KAAK,EAAC,QAAQ,EAAE,SAAS,EAAC,MAAM,iDAAiD,CAAC;AAEzF,OAAO,EAAC,QAAQ,EAAE,WAAW,EAAE,WAAW,EAAE,gBAAgB,EAAC,CAAC;AAC9D,OAAO,EAAC,IAAI,EAAE,OAAO,EAAE,IAAI,EAAE,GAAG,EAAE,MAAM,EAAC,CAAC;AAE1C,OAAO,EACL,iBAAiB,EAAE,cAAc,EAAE,iBAAiB,EAAE,gBAAgB,EAAE,GAAG,EAC3E,QAAQ,EAAE,cAAc,EAAE,iBAAiB,EAC5C,CAAC;AAEF,OAAO,EAAC,QAAQ,EAAE,SAAS,EAAC,CAAC;AAC7B,OAAO,EAAC,SAAS,EAAE,cAAc,EAAE,iBAAiB,EAAE,OAAO,EAAC,CAAC;AAG/D,MAAM,WAAW,cAAc;IAC7B,IAAI,MAAM,IAAI,MAAM,CAAC,QAAQ,CAAC,CAAC;IAC/B,IAAI,IAAI,IAAI,cAAc,CAAC;IAE3B,YAAY,CAAC,KAAK,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,GAAG,IAAI,CAAC;CACnD"}
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monomerCharWidth: number;
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separatorWidth: number;
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monomerToShort: MonomerToShortFunc;
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monomerLengthLimit: number;
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};
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export declare function hitBounds(bounds: number[], x: number): number | null;
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export declare class MonomerPlacer extends CellRendererBackBase<string> {
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monomerLengthLimit: number;
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private readonly propsProvider;
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private colWidth;
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private _monomerLengthList;
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props: MonomerPlacerProps;
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private _processedRows;
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private _processedMaxVisibleSeqLength;
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private _updated;
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get updated(): boolean;
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_monomerLengthMap: {
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[key: string]: TextMetrics;
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};
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[key: string]: HTMLElement;
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};
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/** View is required to subscribe and handle for data frame changes */
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constructor(gridCol: DG.GridColumn | null, tableCol: DG.Column<string>, logger: ILogger, propsProvider: () => MonomerPlacerProps);
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constructor(gridCol: DG.GridColumn | null, tableCol: DG.Column<string>, logger: ILogger, monomerLengthLimit: number, propsProvider: () => MonomerPlacerProps);
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protected reset(): void;
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/** Returns monomers lengths of the {@link rowIdx} and cumulative sums for borders, monomer places */
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getCellMonomerLengths(rowIdx: number, newWidth: number): [number[], number[]];
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{"version":3,"file":"cell-renderer-monomer-placer.d.ts","sourceRoot":"","sources":["cell-renderer-monomer-placer.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAItC,OAAO,EAAC,UAAU,EAAC,MAAM,eAAe,CAAC;AACzC,OAAO,EAAC,kBAAkB,EAAC,MAAM,iBAAiB,CAAC;AAEnD,OAAO,EAAC,oBAAoB,EAAC,MAAM,2BAA2B,CAAC;AAC/D,OAAO,EAAC,OAAO,EAAC,MAAM,UAAU,CAAC;AAGjC,KAAK,kBAAkB,GAAG;IACxB,UAAU,EAAE,UAAU,CAAC;IACvB,gBAAgB,EAAE,MAAM,CAAC;IAAC,cAAc,EAAE,MAAM,CAAC;IACjD,cAAc,EAAE,kBAAkB,
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{"version":3,"file":"cell-renderer-monomer-placer.d.ts","sourceRoot":"","sources":["cell-renderer-monomer-placer.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAItC,OAAO,EAAC,UAAU,EAAC,MAAM,eAAe,CAAC;AACzC,OAAO,EAAC,kBAAkB,EAAC,MAAM,iBAAiB,CAAC;AAEnD,OAAO,EAAC,oBAAoB,EAAC,MAAM,2BAA2B,CAAC;AAC/D,OAAO,EAAC,OAAO,EAAC,MAAM,UAAU,CAAC;AAGjC,KAAK,kBAAkB,GAAG;IACxB,UAAU,EAAE,UAAU,CAAC;IACvB,gBAAgB,EAAE,MAAM,CAAC;IAAC,cAAc,EAAE,MAAM,CAAC;IACjD,cAAc,EAAE,kBAAkB,CAAA;CACnC,CAAC;AAEF,wBAAgB,SAAS,CAAC,MAAM,EAAE,MAAM,EAAE,EAAE,CAAC,EAAE,MAAM,GAAG,MAAM,GAAG,IAAI,CAoBpE;AAED,qBAAa,aAAc,SAAQ,oBAAoB,CAAC,MAAM,CAAC;IAkBpD,kBAAkB,EAAE,MAAM;IACjC,OAAO,CAAC,QAAQ,CAAC,aAAa;IAlBhC,OAAO,CAAC,QAAQ,CAAa;IAC7B,OAAO,CAAC,kBAAkB,CAA2B;IAGrD,OAAO,CAAC,cAAc,CAAK;IACpB,KAAK,EAAE,kBAAkB,CAAC;IACjC,OAAO,CAAC,cAAc,CAAY;IAClC,OAAO,CAAC,6BAA6B,CAAa;IAE3C,iBAAiB,EAAE;QAAE,CAAC,GAAG,EAAE,MAAM,GAAG,WAAW,CAAA;KAAE,CAAM;IACvD,oBAAoB,EAAE;QAAE,CAAC,GAAG,EAAE,MAAM,GAAG,WAAW,CAAA;KAAE,CAAM;IAEjE,sEAAsE;gBAEpE,OAAO,EAAE,EAAE,CAAC,UAAU,GAAG,IAAI,EAC7B,QAAQ,EAAE,EAAE,CAAC,MAAM,CAAC,MAAM,CAAC,EAC3B,MAAM,EAAE,OAAO,EACR,kBAAkB,EAAE,MAAM,EAChB,aAAa,EAAE,MAAM,kBAAkB;cAsBvC,KAAK,IAAI,IAAI;IAQhC,qGAAqG;IAC9F,qBAAqB,CAAC,MAAM,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,CAAC,MAAM,EAAE,EAAE,MAAM,EAAE,CAAC;IAepF,OAAO,CAAC,2BAA2B;IA+BnC,OAAO,CAAC,8BAA8B;IAmDtC,yCAAyC;IAClC,WAAW,CAAC,MAAM,EAAE,MAAM,EAAE,CAAC,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM,GAAG,MAAM,GAAG,IAAI;IASpE,qBAAqB,CAAC,KAAK,EAAE,MAAM,GAAG,IAAI;IAK1C,iBAAiB,CAAC,KAAK,EAAE,MAAM,GAAG,IAAI;IAKtC,KAAK,IAAI,OAAO;CAGxB"}
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return null;
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}
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export class MonomerPlacer extends CellRendererBackBase {
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get updated() { return this._updated; }
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/** View is required to subscribe and handle for data frame changes */
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constructor(gridCol, tableCol, logger, propsProvider) {
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constructor(gridCol, tableCol, logger, monomerLengthLimit, propsProvider) {
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super(gridCol, tableCol, logger);
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this.monomerLengthLimit = monomerLengthLimit;
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this.propsProvider = propsProvider;
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this.colWidth = 0;
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this._monomerLengthList = null;
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// width of separator symbol
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this.separatorWidth = 5;
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this._processedMaxVisibleSeqLength = 0;
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this._updated = false;
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this._monomerLengthMap = {}; // caches the lengths to save time on g.measureText
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this._monomerStructureMap = {}; // caches the atomic structures of monomers
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this.props = this.propsProvider();
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return [res, resSum];
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}
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getCellMonomerLengthsForSeq(rowIdx) {
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const logPrefix = `${this.toLog()}.getCellMonomerLengthsForSeqMsa()`;
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// this.logger.debug(`${logPrefix}, start`);
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if (this._monomerLengthList === null) {
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this._monomerLengthList = new Array(this.tableCol.length).fill(null);
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this._updated = true;
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}
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const minMonWidth = this.props.separatorWidth + 1 * this.props.monomerCharWidth;
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const maxVisibleSeqLength = Math.ceil(this.colWidth / minMonWidth);
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let seqWidth = 0;
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for (let seqMonI = 0; seqMonI < visibleSeqLength; ++seqMonI) {
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93
93
|
const seqMonLabel = seqMonList[seqMonI];
|
|
94
|
-
const shortMon = this.props.monomerToShort(seqMonLabel, this.
|
|
94
|
+
const shortMon = this.props.monomerToShort(seqMonLabel, this.monomerLengthLimit);
|
|
95
95
|
const separatorWidth = this.props.seqHandler.isSeparator() ? this.separatorWidth : this.props.separatorWidth;
|
|
96
96
|
const seqMonWidth = separatorWidth + shortMon.length * this.props.monomerCharWidth;
|
|
97
97
|
res[seqMonI] = seqMonWidth;
|
|
@@ -99,15 +99,15 @@ export class MonomerPlacer extends CellRendererBackBase {
|
|
|
99
99
|
if (seqWidth > this.colWidth)
|
|
100
100
|
break;
|
|
101
101
|
}
|
|
102
|
-
this._updated = true;
|
|
103
102
|
}
|
|
104
103
|
return res;
|
|
105
104
|
}
|
|
106
105
|
getCellMonomerLengthsForSeqMsa() {
|
|
107
106
|
var _a;
|
|
107
|
+
const logPrefix = `${this.toLog()}.getCellMonomerLengthsForSeqMsa()`;
|
|
108
|
+
// this.logger.debug(`${logPrefix}, start`);
|
|
108
109
|
if (this._monomerLengthList === null) {
|
|
109
110
|
this._monomerLengthList = new Array(1).fill(null);
|
|
110
|
-
this._updated = true;
|
|
111
111
|
}
|
|
112
112
|
(_a = this._monomerLengthList)[0] ?? (_a[0] = new Array(0));
|
|
113
113
|
const res = this._monomerLengthList[0];
|
|
@@ -142,14 +142,13 @@ export class MonomerPlacer extends CellRendererBackBase {
|
|
|
142
142
|
let seqWidth = 0;
|
|
143
143
|
for (let seqMonI = 0; seqMonI < visibleSeqLength; ++seqMonI) {
|
|
144
144
|
const seqMonLabel = seqMonList[seqMonI];
|
|
145
|
-
const shortMon = this.props.monomerToShort(seqMonLabel, this.
|
|
145
|
+
const shortMon = this.props.monomerToShort(seqMonLabel, this.monomerLengthLimit);
|
|
146
146
|
const seqMonWidth = this.props.separatorWidth + shortMon.length * this.props.monomerCharWidth;
|
|
147
147
|
res[seqMonI] = Math.max(res[seqMonI] ?? 0, seqMonWidth);
|
|
148
148
|
seqWidth += seqMonWidth;
|
|
149
149
|
if (seqWidth >= this.colWidth)
|
|
150
150
|
break;
|
|
151
151
|
}
|
|
152
|
-
this._updated = true;
|
|
153
152
|
this._processedMaxVisibleSeqLength = Math.max(this._processedMaxVisibleSeqLength, maxVisibleSeqLength);
|
|
154
153
|
}
|
|
155
154
|
return res; // first (and single) row of data
|
|
@@ -164,12 +163,12 @@ export class MonomerPlacer extends CellRendererBackBase {
|
|
|
164
163
|
return hitBounds(monomerMaxLengthSumList, x);
|
|
165
164
|
}
|
|
166
165
|
setMonomerLengthLimit(limit) {
|
|
167
|
-
this.
|
|
168
|
-
this.
|
|
166
|
+
this.monomerLengthLimit = limit;
|
|
167
|
+
this.reset();
|
|
169
168
|
}
|
|
170
169
|
setSeparatorWidth(width) {
|
|
171
170
|
this.props.separatorWidth = width;
|
|
172
|
-
this.
|
|
171
|
+
this.reset();
|
|
173
172
|
}
|
|
174
173
|
isMsa() {
|
|
175
174
|
return this.props.seqHandler.isMsa();
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"cell-renderer-monomer-placer.js","sourceRoot":"","sources":["cell-renderer-monomer-placer.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAEtC,OAAO,EAAE,MAAM,IAAI,CAAC;AAEpB,OAAO,EAAC,UAAU,EAAC,MAAM,eAAe,CAAC;AAGzC,OAAO,EAAC,oBAAoB,EAAC,MAAM,2BAA2B,CAAC;AAE/D,OAAO,EAAC,mBAAmB,EAAC,MAAM,gCAAgC,CAAC;AAQnE,MAAM,UAAU,SAAS,CAAC,MAAgB,EAAE,CAAS;IACnD,IAAI,cAAc,GAAW,GAAG,CAAC;IACjC,IAAI,KAAK,GAAW,CAAC,CAAC;IACtB,IAAI,MAAM,GAAG,MAAM,CAAC,MAAM,GAAG,CAAC,CAAC;IAC/B,IAAI,IAAI,CAAC;IACT,OAAO,KAAK,IAAI,MAAM,EAAE;QACtB,IAAI,GAAG,IAAI,CAAC,KAAK,CAAC,CAAC,MAAM,GAAG,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC;QACxC,IAAI,MAAM,CAAC,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,GAAG,MAAM,CAAC,IAAI,GAAG,CAAC,CAAC;YAC3C,OAAO,IAAI,CAAC;aACT,IAAI,CAAC,GAAG,MAAM,CAAC,IAAI,CAAC;YACvB,MAAM,GAAG,IAAI,GAAG,CAAC,CAAC;aACf,gCAAgC;YACnC,KAAK,GAAG,IAAI,GAAG,CAAC,CAAC;QAEnB,IAAI,EAAE,cAAc,IAAI,CAAC,EAAE;YACzB,MAAM,IAAI,KAAK,CAAC,gCAAgC,CAAC,+BAA+B;gBAC9E,MAAM,IAAI,CAAC,SAAS,CAAC,MAAM,CAAC,IAAI,CAAC,CAAC;SACrC;KACF;IACD,OAAO,IAAI,CAAC;AACd,CAAC;AAED,MAAM,OAAO,aAAc,SAAQ,oBAA4B;
|
|
1
|
+
{"version":3,"file":"cell-renderer-monomer-placer.js","sourceRoot":"","sources":["cell-renderer-monomer-placer.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAEtC,OAAO,EAAE,MAAM,IAAI,CAAC;AAEpB,OAAO,EAAC,UAAU,EAAC,MAAM,eAAe,CAAC;AAGzC,OAAO,EAAC,oBAAoB,EAAC,MAAM,2BAA2B,CAAC;AAE/D,OAAO,EAAC,mBAAmB,EAAC,MAAM,gCAAgC,CAAC;AAQnE,MAAM,UAAU,SAAS,CAAC,MAAgB,EAAE,CAAS;IACnD,IAAI,cAAc,GAAW,GAAG,CAAC;IACjC,IAAI,KAAK,GAAW,CAAC,CAAC;IACtB,IAAI,MAAM,GAAG,MAAM,CAAC,MAAM,GAAG,CAAC,CAAC;IAC/B,IAAI,IAAI,CAAC;IACT,OAAO,KAAK,IAAI,MAAM,EAAE;QACtB,IAAI,GAAG,IAAI,CAAC,KAAK,CAAC,CAAC,MAAM,GAAG,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC;QACxC,IAAI,MAAM,CAAC,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,GAAG,MAAM,CAAC,IAAI,GAAG,CAAC,CAAC;YAC3C,OAAO,IAAI,CAAC;aACT,IAAI,CAAC,GAAG,MAAM,CAAC,IAAI,CAAC;YACvB,MAAM,GAAG,IAAI,GAAG,CAAC,CAAC;aACf,gCAAgC;YACnC,KAAK,GAAG,IAAI,GAAG,CAAC,CAAC;QAEnB,IAAI,EAAE,cAAc,IAAI,CAAC,EAAE;YACzB,MAAM,IAAI,KAAK,CAAC,gCAAgC,CAAC,+BAA+B;gBAC9E,MAAM,IAAI,CAAC,SAAS,CAAC,MAAM,CAAC,IAAI,CAAC,CAAC;SACrC;KACF;IACD,OAAO,IAAI,CAAC;AACd,CAAC;AAED,MAAM,OAAO,aAAc,SAAQ,oBAA4B;IAa7D,sEAAsE;IACtE,YACE,OAA6B,EAC7B,QAA2B,EAC3B,MAAe,EACR,kBAA0B,EAChB,aAAuC;QAExD,KAAK,CAAC,OAAO,EAAE,QAAQ,EAAE,MAAM,CAAC,CAAC;QAH1B,uBAAkB,GAAlB,kBAAkB,CAAQ;QAChB,kBAAa,GAAb,aAAa,CAA0B;QAlBlD,aAAQ,GAAW,CAAC,CAAC;QACrB,uBAAkB,GAAsB,IAAI,CAAC;QAErD,4BAA4B;QACpB,mBAAc,GAAG,CAAC,CAAC;QAGnB,kCAA6B,GAAW,CAAC,CAAC;QAE3C,sBAAiB,GAAmC,EAAE,CAAC,CAAC,mDAAmD;QAC3G,yBAAoB,GAAmC,EAAE,CAAC,CAAC,2CAA2C;QAW3G,IAAI,CAAC,KAAK,GAAG,IAAI,CAAC,aAAa,EAAE,CAAC;QAClC,IAAI,CAAC,cAAc,GAAG,EAAE,CAAC,MAAM,CAAC,MAAM,CAAC,IAAI,CAAC,QAAS,CAAC,MAAM,CAAC,CAAC;QAE9D,IAAI,IAAI,CAAC,OAAO,EAAE;YAChB,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,OAAO,CAAC,IAAI,CAAC,kBAAkB,CAAC,SAAS,CAAC,GAAG,EAAE;gBACjE,IAAI,CAAC,WAAW,CAAC,IAAI,EAAE,CAAC;YAC1B,CAAC,CAAC,CAAC,CAAC;SACL;QAED,mBAAmB,EAAE,CAAC,IAAI,CAAC,CAAC,SAAS,EAAE,EAAE;YACvC,IAAI,IAAI,CAAC,SAAS;gBAAE,OAAO;YAC3B,MAAM,UAAU,GAAG,SAAS,CAAC,SAAS,EAAE,CAAC;YACzC,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,UAAU,CAAC,SAAS,CAAC,SAAS,CAAC,GAAG,EAAE;gBACjD,IAAI,CAAC,KAAK,EAAE,CAAC;gBACb,IAAI,CAAC,OAAO,EAAE,IAAI,EAAE,UAAU,EAAE,CAAC;YACnC,CAAC,CAAC,CAAC,CAAC;QACN,CAAC,CAAC,CAAC;IACL,CAAC;IAEkB,KAAK;QACtB,IAAI,IAAI,CAAC,aAAa;YAAE,IAAI,CAAC,KAAK,GAAG,IAAI,CAAC,aAAa,EAAE,CAAC;QAC1D,IAAI,CAAC,cAAc,GAAG,EAAE,CAAC,MAAM,CAAC,MAAM,CAAC,IAAI,CAAC,QAAS,CAAC,MAAM,CAAC,CAAC;QAC9D,IAAI,CAAC,kBAAkB,GAAG,IAAI,CAAC;QAC/B,IAAI,CAAC,iBAAiB,GAAG,EAAE,CAAC;QAC5B,IAAI,CAAC,oBAAoB,GAAG,EAAE,CAAC;IACjC,CAAC;IAED,qGAAqG;IAC9F,qBAAqB,CAAC,MAAc,EAAE,QAAgB;QAC3D,IAAI,IAAI,CAAC,QAAQ,GAAG,QAAQ,EAAE;YAC5B,IAAI,CAAC,QAAQ,GAAG,QAAQ,CAAC;YACzB,IAAI,CAAC,KAAK,EAAE,CAAC;SACd;QACD,MAAM,GAAG,GAAa,IAAI,CAAC,KAAK,CAAC,UAAU,CAAC,KAAK,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,8BAA8B,EAAE,CAAC,CAAC;YAC3F,IAAI,CAAC,2BAA2B,CAAC,MAAM,CAAC,CAAC;QAE3C,MAAM,MAAM,GAAa,IAAI,KAAK,CAAS,GAAG,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC;QAC3D,MAAM,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,UAAU;QACzB,KAAK,IAAI,GAAG,GAAW,CAAC,EAAE,GAAG,GAAG,MAAM,CAAC,MAAM,EAAE,GAAG,EAAE;YAClD,MAAM,CAAC,GAAG,CAAC,GAAG,MAAM,CAAC,GAAG,GAAG,CAAC,CAAC,GAAG,GAAG,CAAC,GAAG,GAAG,CAAC,CAAC,CAAC;QAC/C,OAAO,CAAC,GAAG,EAAE,MAAM,CAAC,CAAC;IACvB,CAAC;IAEO,2BAA2B,CAAC,MAAc;QAChD,MAAM,SAAS,GAAG,GAAG,IAAI,CAAC,KAAK,EAAE,mCAAmC,CAAC;QACrE,4CAA4C;QAE5C,IAAI,IAAI,CAAC,kBAAkB,KAAK,IAAI,EAAE;YACpC,IAAI,CAAC,kBAAkB,GAAG,IAAI,KAAK,CAAC,IAAI,CAAC,QAAQ,CAAC,MAAM,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;SACtE;QAED,MAAM,WAAW,GAAG,IAAI,CAAC,KAAK,CAAC,cAAc,GAAG,CAAC,GAAG,IAAI,CAAC,KAAK,CAAC,gBAAgB,CAAC;QAChF,MAAM,mBAAmB,GAAW,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,QAAQ,GAAG,WAAW,CAAC,CAAC;QAC3E,MAAM,UAAU,GAAoB,UAAU,CAAC,SAAS,CAAC,IAAI,CAAC,QAAQ,CAAC,CAAC,WAAW,CAAC,MAAM,CAAC,CAAC,SAAS,CAAC;QACtG,MAAM,gBAAgB,GAAW,IAAI,CAAC,GAAG,CAAC,mBAAmB,EAAE,UAAU,CAAC,MAAM,CAAC,CAAC;QAElF,IAAI,GAAG,GAAa,IAAI,CAAC,kBAAkB,CAAC,MAAM,CAAC,CAAC;QACpD,IAAI,GAAG,KAAK,IAAI,IAAI,GAAG,CAAC,MAAM,GAAG,gBAAgB,EAAE;YACjD,GAAG,GAAG,IAAI,CAAC,kBAAkB,CAAC,MAAM,CAAC,GAAG,IAAI,KAAK,CAAS,UAAU,CAAC,MAAM,CAAC,CAAC;YAE7E,IAAI,QAAQ,GAAW,CAAC,CAAC;YACzB,KAAK,IAAI,OAAO,GAAG,CAAC,EAAE,OAAO,GAAG,gBAAgB,EAAE,EAAE,OAAO,EAAE;gBAC3D,MAAM,WAAW,GAAG,UAAU,CAAC,OAAO,CAAC,CAAC;gBACxC,MAAM,QAAQ,GAAW,IAAI,CAAC,KAAK,CAAC,cAAc,CAAC,WAAW,EAAE,IAAI,CAAC,kBAAkB,CAAC,CAAC;gBACzF,MAAM,cAAc,GAAG,IAAI,CAAC,KAAK,CAAC,UAAU,CAAC,WAAW,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,cAAc,CAAC,CAAC,CAAC,IAAI,CAAC,KAAK,CAAC,cAAc,CAAC;gBAC7G,MAAM,WAAW,GAAW,cAAc,GAAG,QAAQ,CAAC,MAAM,GAAG,IAAI,CAAC,KAAK,CAAC,gBAAgB,CAAC;gBAC3F,GAAG,CAAC,OAAO,CAAC,GAAG,WAAW,CAAC;gBAC3B,QAAQ,IAAI,WAAW,CAAC;gBACxB,IAAI,QAAQ,GAAG,IAAI,CAAC,QAAQ;oBAAE,MAAM;aACrC;SACF;QACD,OAAO,GAAG,CAAC;IACb,CAAC;IAEO,8BAA8B;;QACpC,MAAM,SAAS,GAAG,GAAG,IAAI,CAAC,KAAK,EAAE,mCAAmC,CAAC;QACrE,4CAA4C;QAC5C,IAAI,IAAI,CAAC,kBAAkB,KAAK,IAAI,EAAE;YACpC,IAAI,CAAC,kBAAkB,GAAG,IAAI,KAAK,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;SACnD;QACD,MAAA,IAAI,CAAC,kBAAkB,EAAC,CAAC,SAAD,CAAC,IAAM,IAAI,KAAK,CAAC,CAAC,CAAC,EAAC;QAC5C,MAAM,GAAG,GAAG,IAAI,CAAC,kBAAkB,CAAC,CAAC,CAAC,CAAC;QACvC,mFAAmF;QACnF,8FAA8F;QAE9F,MAAM,EAAC,QAAQ,EAAE,MAAM,EAAC,GAAG,CAAC,GAAG,EAAE;YAC/B,IAAI;gBACF,MAAM,IAAI,GAAmB,IAAI,CAAC,OAAO,IAAI,IAAI,CAAC,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,IAAI,CAAC,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,IAAI,CAAC;gBAC1F,IAAI,IAAI,IAAI,IAAI,CAAC,IAAI,EAAE;oBACrB,OAAO;wBACL,QAAQ,EAAE,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,IAAI,EAAE,UAAU,CAAC,GAAG,IAAI,CAAC,CAAC,GAAG,EAAE,CAAC,EAAE,CAAC,CAAC;wBACnE,MAAM,EAAE,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC,IAAI,EAAE,UAAU,CAAC,GAAG,IAAI,CAAC,CAAC,GAAG,EAAE,CAAC,EAAE,IAAI,CAAC,QAAQ,CAAC,MAAM,CAAC;qBACpF,CAAC;iBACH;;oBAAM,OAAO,EAAC,QAAQ,EAAE,CAAC,EAAE,MAAM,EAAE,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,QAAQ,CAAC,MAAM,EAAE,EAAE,CAAC,EAAC,CAAC;aACzE;YAAC,OAAO,EAAE,EAAE;gBACX,OAAO,EAAC,QAAQ,EAAE,CAAC,EAAE,MAAM,EAAE,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,QAAQ,CAAC,MAAM,EAAE,EAAE,CAAC,EAAC,CAAC;aAClE;QACH,CAAC,CAAC,EAAE,CAAC;QAEL,MAAM,WAAW,GAAG,IAAI,CAAC,KAAK,CAAC,cAAc,GAAG,CAAC,GAAG,IAAI,CAAC,KAAK,CAAC,gBAAgB,CAAC;QAChF,MAAM,mBAAmB,GAAW,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,QAAQ,GAAG,WAAW,CAAC,CAAC;QAC3E,KAAK,IAAI,MAAM,GAAG,QAAQ,EAAE,MAAM,GAAG,MAAM,EAAE,MAAM,EAAE,EAAE;YACrD,IAAI,IAAI,CAAC,cAAc,CAAC,GAAG,CAAC,MAAM,CAAC,IAAI,mBAAmB,IAAI,IAAI,CAAC,6BAA6B;gBAC9F,SAAS;YACX,MAAM,UAAU,GAAoB,UAAU,CAAC,SAAS,CAAC,IAAI,CAAC,QAAQ,CAAC;iBACpE,WAAW,CAAC,MAAM,EAAE,mBAAmB,CAAC,CAAC,SAAS,CAAC;YAEtD,MAAM,gBAAgB,GAAW,IAAI,CAAC,GAAG,CAAC,mBAAmB,EAAE,UAAU,CAAC,MAAM,CAAC,CAAC;YAClF,IAAI,gBAAgB,GAAG,GAAG,CAAC,MAAM;gBAC/B,GAAG,CAAC,IAAI,CAAC,GAAG,IAAI,KAAK,CAAS,gBAAgB,GAAG,GAAG,CAAC,MAAM,CAAC,CAAC,IAAI,CAAC,WAAW,CAAC,CAAC,CAAC;YAElF,IAAI,QAAQ,GAAW,CAAC,CAAC;YACzB,KAAK,IAAI,OAAO,GAAG,CAAC,EAAE,OAAO,GAAG,gBAAgB,EAAE,EAAE,OAAO,EAAE;gBAC3D,MAAM,WAAW,GAAW,UAAU,CAAC,OAAO,CAAC,CAAC;gBAChD,MAAM,QAAQ,GAAW,IAAI,CAAC,KAAK,CAAC,cAAc,CAAC,WAAW,EAAE,IAAI,CAAC,kBAAkB,CAAC,CAAC;gBACzF,MAAM,WAAW,GAAW,IAAI,CAAC,KAAK,CAAC,cAAc,GAAG,QAAQ,CAAC,MAAM,GAAG,IAAI,CAAC,KAAK,CAAC,gBAAgB,CAAC;gBACtG,GAAG,CAAC,OAAO,CAAC,GAAG,IAAI,CAAC,GAAG,CAAC,GAAG,CAAC,OAAO,CAAC,IAAI,CAAC,EAAE,WAAW,CAAC,CAAC;gBACxD,QAAQ,IAAI,WAAW,CAAC;gBACxB,IAAI,QAAQ,IAAI,IAAI,CAAC,QAAQ;oBAAE,MAAM;aACtC;YACD,IAAI,CAAC,6BAA6B,GAAG,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,6BAA6B,EAAE,mBAAmB,CAAC,CAAC;SACxG;QACD,OAAO,GAAG,CAAC,CAAC,iCAAiC;IAC/C,CAAC;IAED,yCAAyC;IAClC,WAAW,CAAC,MAAc,EAAE,CAAS,EAAE,KAAa;QACzD,MAAM,CAAC,qBAAqB,EAAE,uBAAuB,CAAC,GACpD,IAAI,CAAC,qBAAqB,CAAC,MAAM,EAAE,KAAK,CAAC,CAAC;QAC5C,MAAM,EAAE,GAAG,UAAU,CAAC,SAAS,CAAC,IAAI,CAAC,QAAQ,CAAC,CAAC;QAC/C,MAAM,UAAU,GAAa,EAAE,CAAC,EAAE,CAAC,WAAW,CAAC,MAAM,CAAC,CAAC,SAAS,CAAC,CAAC,OAAO,EAAE,CAAC;QAC5E,IAAI,UAAU,CAAC,MAAM,KAAK,CAAC;YAAE,OAAO,IAAI,CAAC;QACzC,OAAO,SAAS,CAAC,uBAAuB,EAAE,CAAC,CAAC,CAAC;IAC/C,CAAC;IAEM,qBAAqB,CAAC,KAAa;QACxC,IAAI,CAAC,kBAAkB,GAAG,KAAK,CAAC;QAChC,IAAI,CAAC,KAAK,EAAE,CAAC;IACf,CAAC;IAEM,iBAAiB,CAAC,KAAa;QACpC,IAAI,CAAC,KAAK,CAAC,cAAc,GAAG,KAAK,CAAC;QAClC,IAAI,CAAC,KAAK,EAAE,CAAC;IACf,CAAC;IAEM,KAAK;QACV,OAAO,IAAI,CAAC,KAAK,CAAC,UAAU,CAAC,KAAK,EAAE,CAAC;IACvC,CAAC;CACF"}
|
|
@@ -1,4 +1,5 @@
|
|
|
1
1
|
import * as DG from 'datagrok-api/dg';
|
|
2
|
+
import { ILogger } from './logger';
|
|
2
3
|
export declare enum TAGS {
|
|
3
4
|
maxMonomerLength = ".mm.cellRenderer.maxMonomerLength"
|
|
4
5
|
}
|
|
@@ -6,28 +7,33 @@ export declare enum DrawStyle {
|
|
|
6
7
|
MSA = "MSA",
|
|
7
8
|
classic = "classic"
|
|
8
9
|
}
|
|
10
|
+
export declare const PrintOptionsDefaults: {
|
|
11
|
+
/** Color of text to print */ color: string;
|
|
12
|
+
/** */ pivot: number;
|
|
13
|
+
/** Is left aligned */ left: boolean;
|
|
14
|
+
/** Transparency rate where 1.0 is fully transparent */ transparencyRate: number;
|
|
15
|
+
/** Monomer's separator, if specified */ separator: string;
|
|
16
|
+
/** Is checker if element last or not */ last: boolean;
|
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17
|
+
/** MSA - for aligned, classic - for other seq */ drawStyle: DrawStyle;
|
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18
|
+
/** Max word lengths per position (index of list) */ maxWord: number[];
|
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19
|
+
/** Word index we currently draw */ wordIdx: number;
|
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|
+
/** */ gridCell: DG.GridCell | null;
|
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21
|
+
/** Reference sequence for diff mode */ referenceSequence: string[] | null;
|
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22
|
+
/** Max length of a monomer */ maxLengthOfMonomer: number | null;
|
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|
+
/** Map of monomers' text sizes */ monomerTextSizeMap: {
|
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24
|
+
[key: string]: TextMetrics;
|
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+
};
|
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+
/** */ logger?: ILogger | undefined;
|
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+
};
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+
export type PrintOptions = typeof PrintOptionsDefaults;
|
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9
29
|
/** A function that prints a string aligned to left or centered.
|
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|
-
* @param {
|
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* @param {
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-
* @param {number}
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-
* @param {number}
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-
* @param {
|
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* @param {
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-
* @param {
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17
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-
* @param {number}pivot Pirvot.
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18
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-
* @param {boolean}left Is left aligned.
|
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|
-
* @param {number}transparencyRate Transparency rate where 1.0 is fully transparent
|
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-
* @param {string}separator Is separator for sequence.
|
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21
|
-
* @param {boolean}last Is checker if element last or not.
|
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22
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-
* @param {DrawStyle}drawStyle Is draw style. MSA - for multicharSeq, classic - for other seq.
|
|
23
|
-
* @param {number[]}maxWord {{[pos: number]: number}} Max word lengths per position.
|
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24
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-
* @param {number}wordIdx Is index of word we currently draw.
|
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-
* @param {DG.GridCell}gridCell Is grid cell.
|
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-
* @param {string[]}referenceSequence Is reference sequence for diff mode.
|
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27
|
-
* @param {number}maxLengthOfMonomer Is max length of monomer.
|
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|
-
* @param {{[key: string]: TextMetrics}}monomerTextSizeMap Is map of monomer text sizes.
|
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30
|
+
* @param {CanvasRenderingContext2D} g Canvas rendering context
|
|
31
|
+
* @param {string} s Text to print
|
|
32
|
+
* @param {number} x x coordinate
|
|
33
|
+
* @param {number} y y coordinate
|
|
34
|
+
* @param {number} w Width
|
|
35
|
+
* @param {number} h Height
|
|
36
|
+
* @param {PrintOptions} options
|
|
29
37
|
* @return {number} x coordinate to start printing at.*/
|
|
30
|
-
export declare function printLeftOrCentered(
|
|
31
|
-
[key: string]: TextMetrics;
|
|
32
|
-
}): number;
|
|
38
|
+
export declare function printLeftOrCentered(g: CanvasRenderingContext2D, s: string, x: number, y: number, w: number, h: number, options: Partial<PrintOptions>): number;
|
|
33
39
|
//# sourceMappingURL=cell-renderer.d.ts.map
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"cell-renderer.d.ts","sourceRoot":"","sources":["cell-renderer.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;
|
|
1
|
+
{"version":3,"file":"cell-renderer.d.ts","sourceRoot":"","sources":["cell-renderer.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAGtC,OAAO,EAAC,OAAO,EAAC,MAAM,UAAU,CAAC;AAOjC,oBAAY,IAAI;IACd,gBAAgB,sCAAsC;CACvD;AAED,oBAAY,SAAS;IACnB,GAAG,QAAQ;IACX,OAAO,YAAY;CACpB;AAED,eAAO,MAAM,oBAAoB;IAC/B,6BAA6B,QAAQ,MAAM;IAC3C,MAAM,QAAQ,MAAM;IACpB,sBAAsB,OAAO,OAAO;IACpC,uDAAuD,mBAAmB,MAAM;IAChF,wCAAwC,YAAY,MAAM;IAC1D,wCAAwC,OAAO,OAAO;IACtD,iDAAiD,YAAY,SAAS;IACtE,oDAAoD,UAAU,MAAM,EAAE;IACtE,mCAAmC,UAAU,MAAM;IACnD,OAAO,WAAW,GAAG,QAAQ,GAAG,IAAI;IACpC,uCAAuC,oBAAoB,MAAM,EAAE,GAAG,IAAI;IAC1E,8BAA8B,qBAAqB,MAAM,GAAG,IAAI;IAChE,kCAAkC;;;IAClC,MAAM;CACL,CAAC;AAEJ,MAAM,MAAM,YAAY,GAAG,OAAO,oBAAoB,CAAC;AAEvD;;;;;;;;wDAQwD;AACxD,wBAAgB,mBAAmB,CAAC,CAAC,EAAE,wBAAwB,EAC7D,CAAC,EAAE,MAAM,EAAE,CAAC,EAAE,MAAM,EAAE,CAAC,EAAE,MAAM,EAAE,CAAC,EAAE,MAAM,EAAE,CAAC,EAAE,MAAM,EAAE,OAAO,EAAE,OAAO,CAAC,YAAY,CAAC,GACpF,MAAM,CAkER"}
|
|
@@ -12,78 +12,88 @@ export var DrawStyle;
|
|
|
12
12
|
DrawStyle["MSA"] = "MSA";
|
|
13
13
|
DrawStyle["classic"] = "classic";
|
|
14
14
|
})(DrawStyle || (DrawStyle = {}));
|
|
15
|
+
export const PrintOptionsDefaults = new class {
|
|
16
|
+
constructor() {
|
|
17
|
+
/** Color of text to print */ this.color = undefinedColor;
|
|
18
|
+
/** */ this.pivot = 0;
|
|
19
|
+
/** Is left aligned */ this.left = false;
|
|
20
|
+
/** Transparency rate where 1.0 is fully transparent */ this.transparencyRate = 1.0;
|
|
21
|
+
/** Monomer's separator, if specified */ this.separator = '';
|
|
22
|
+
/** Is checker if element last or not */ this.last = false;
|
|
23
|
+
/** MSA - for aligned, classic - for other seq */ this.drawStyle = DrawStyle.classic;
|
|
24
|
+
/** Max word lengths per position (index of list) */ this.maxWord = [];
|
|
25
|
+
/** Word index we currently draw */ this.wordIdx = 0;
|
|
26
|
+
/** */ this.gridCell = null;
|
|
27
|
+
/** Reference sequence for diff mode */ this.referenceSequence = null;
|
|
28
|
+
/** Max length of a monomer */ this.maxLengthOfMonomer = null;
|
|
29
|
+
/** Map of monomers' text sizes */ this.monomerTextSizeMap = {};
|
|
30
|
+
/** */ this.logger = undefined;
|
|
31
|
+
}
|
|
32
|
+
}();
|
|
15
33
|
/** A function that prints a string aligned to left or centered.
|
|
16
|
-
* @param {
|
|
17
|
-
* @param {
|
|
18
|
-
* @param {number}
|
|
19
|
-
* @param {number}
|
|
20
|
-
* @param {
|
|
21
|
-
* @param {
|
|
22
|
-
* @param {
|
|
23
|
-
* @param {number}pivot Pirvot.
|
|
24
|
-
* @param {boolean}left Is left aligned.
|
|
25
|
-
* @param {number}transparencyRate Transparency rate where 1.0 is fully transparent
|
|
26
|
-
* @param {string}separator Is separator for sequence.
|
|
27
|
-
* @param {boolean}last Is checker if element last or not.
|
|
28
|
-
* @param {DrawStyle}drawStyle Is draw style. MSA - for multicharSeq, classic - for other seq.
|
|
29
|
-
* @param {number[]}maxWord {{[pos: number]: number}} Max word lengths per position.
|
|
30
|
-
* @param {number}wordIdx Is index of word we currently draw.
|
|
31
|
-
* @param {DG.GridCell}gridCell Is grid cell.
|
|
32
|
-
* @param {string[]}referenceSequence Is reference sequence for diff mode.
|
|
33
|
-
* @param {number}maxLengthOfMonomer Is max length of monomer.
|
|
34
|
-
* @param {{[key: string]: TextMetrics}}monomerTextSizeMap Is map of monomer text sizes.
|
|
34
|
+
* @param {CanvasRenderingContext2D} g Canvas rendering context
|
|
35
|
+
* @param {string} s Text to print
|
|
36
|
+
* @param {number} x x coordinate
|
|
37
|
+
* @param {number} y y coordinate
|
|
38
|
+
* @param {number} w Width
|
|
39
|
+
* @param {number} h Height
|
|
40
|
+
* @param {PrintOptions} options
|
|
35
41
|
* @return {number} x coordinate to start printing at.*/
|
|
36
|
-
export function printLeftOrCentered(
|
|
42
|
+
export function printLeftOrCentered(g, s, x, y, w, h, options) {
|
|
43
|
+
var _a, _b, _c;
|
|
44
|
+
const opts = Object.assign(Object.assign({}, PrintOptionsDefaults), options);
|
|
45
|
+
const logPrefix = `Bio: printLeftOrCentered()`;
|
|
46
|
+
options.logger?.debug(`${logPrefix}, start`);
|
|
37
47
|
g.textAlign = 'start';
|
|
38
48
|
let colorPart = s.substring(0);
|
|
39
|
-
let grayPart = last ? '' : separator;
|
|
40
|
-
if (drawStyle === DrawStyle.MSA)
|
|
49
|
+
let grayPart = opts.last ? '' : opts.separator;
|
|
50
|
+
if (opts.drawStyle === DrawStyle.MSA)
|
|
41
51
|
grayPart = '';
|
|
42
52
|
let colorCode = true;
|
|
43
53
|
let compareWithCurrent = true;
|
|
44
54
|
let highlightDifference = 'difference';
|
|
45
|
-
if ((gridCell != null) && (gridCell.cell.column != null)) {
|
|
46
|
-
colorCode = gridCell.cell.column.temp['color-code'] ?? true;
|
|
47
|
-
compareWithCurrent = gridCell.cell.column.temp['compare-with-current'] ?? true;
|
|
48
|
-
highlightDifference = gridCell.cell.column.temp['highlight-difference'] ?? 'difference';
|
|
55
|
+
if ((opts.gridCell != null) && (opts.gridCell.cell.column != null)) {
|
|
56
|
+
colorCode = opts.gridCell.cell.column.temp['color-code'] ?? true;
|
|
57
|
+
compareWithCurrent = opts.gridCell.cell.column.temp['compare-with-current'] ?? true;
|
|
58
|
+
highlightDifference = opts.gridCell.cell.column.temp['highlight-difference'] ?? 'difference';
|
|
49
59
|
}
|
|
50
|
-
if (referenceSequence) {
|
|
51
|
-
const currentMonomerCanonical = referenceSequence[wordIdx];
|
|
52
|
-
if (compareWithCurrent && (referenceSequence.length > 0) && (highlightDifference === 'difference'))
|
|
53
|
-
transparencyRate = (colorPart == currentMonomerCanonical) ? 0.3 : transparencyRate;
|
|
54
|
-
if (compareWithCurrent && (referenceSequence.length > 0) && (highlightDifference === 'equal'))
|
|
55
|
-
transparencyRate = (colorPart != currentMonomerCanonical) ? 0.3 : transparencyRate;
|
|
60
|
+
if (opts.referenceSequence) {
|
|
61
|
+
const currentMonomerCanonical = opts.referenceSequence[opts.wordIdx];
|
|
62
|
+
if (compareWithCurrent && (opts.referenceSequence.length > 0) && (highlightDifference === 'difference'))
|
|
63
|
+
opts.transparencyRate = (colorPart == currentMonomerCanonical) ? 0.3 : opts.transparencyRate;
|
|
64
|
+
if (compareWithCurrent && (opts.referenceSequence.length > 0) && (highlightDifference === 'equal'))
|
|
65
|
+
opts.transparencyRate = (colorPart != currentMonomerCanonical) ? 0.3 : opts.transparencyRate;
|
|
56
66
|
}
|
|
57
|
-
if (maxLengthOfMonomer != null)
|
|
58
|
-
colorPart = monomerToShortFunction(colorPart, maxLengthOfMonomer);
|
|
67
|
+
if (opts.maxLengthOfMonomer != null)
|
|
68
|
+
colorPart = monomerToShortFunction(colorPart, opts.maxLengthOfMonomer);
|
|
59
69
|
const fullText = colorPart + grayPart;
|
|
60
|
-
monomerTextSizeMap[fullText] ?? (
|
|
61
|
-
let textSize = monomerTextSizeMap[fullText];
|
|
62
|
-
monomerTextSizeMap[colorPart] ?? (
|
|
63
|
-
let maxColorTextSize = monomerTextSizeMap[colorPart].width;
|
|
64
|
-
monomerTextSizeMap[grayPart] ?? (monomerTextSizeMap[grayPart] = g.measureText(grayPart));
|
|
65
|
-
const grayPartSize = monomerTextSizeMap[grayPart].width;
|
|
70
|
+
(_a = opts.monomerTextSizeMap)[fullText] ?? (_a[fullText] = g.measureText(fullText));
|
|
71
|
+
let textSize = opts.monomerTextSizeMap[fullText];
|
|
72
|
+
(_b = opts.monomerTextSizeMap)[colorPart] ?? (_b[colorPart] = g.measureText(colorPart));
|
|
73
|
+
let maxColorTextSize = opts.monomerTextSizeMap[colorPart].width;
|
|
66
74
|
const dy = h / 2 - (textSize.fontBoundingBoxAscent + textSize.fontBoundingBoxDescent) / 2 + 1;
|
|
75
|
+
(_c = opts.monomerTextSizeMap)[grayPart] ?? (_c[grayPart] = g.measureText(grayPart));
|
|
76
|
+
const grayPartSize = opts.monomerTextSizeMap[grayPart].width;
|
|
67
77
|
textSize = textSize.width;
|
|
68
|
-
if (drawStyle === DrawStyle.MSA) {
|
|
69
|
-
maxColorTextSize = maxWord[wordIdx];
|
|
70
|
-
textSize = maxWord[wordIdx];
|
|
78
|
+
if (opts.drawStyle === DrawStyle.MSA) {
|
|
79
|
+
maxColorTextSize = opts.maxWord[opts.wordIdx];
|
|
80
|
+
textSize = opts.maxWord[opts.wordIdx];
|
|
71
81
|
}
|
|
72
82
|
/** Draw color part at {@link dx1}, and gray part at {@link dx2}. */
|
|
73
83
|
function draw(dx1, dx2) {
|
|
74
|
-
const drawColor = colorCode ? color : blackColor;
|
|
84
|
+
const drawColor = colorCode ? opts.color : blackColor;
|
|
75
85
|
g.fillStyle = drawColor;
|
|
76
|
-
g.globalAlpha = transparencyRate;
|
|
77
|
-
if (drawStyle === DrawStyle.classic) {
|
|
86
|
+
g.globalAlpha = opts.transparencyRate;
|
|
87
|
+
if (opts.drawStyle === DrawStyle.classic) {
|
|
78
88
|
g.fillText(colorPart, x + dx1, y + dy);
|
|
79
89
|
g.fillStyle = grayColor;
|
|
80
90
|
g.fillText(grayPart, x + dx2, y + dy);
|
|
81
91
|
}
|
|
82
|
-
if (drawStyle === DrawStyle.MSA)
|
|
92
|
+
if (opts.drawStyle === DrawStyle.MSA)
|
|
83
93
|
g.fillText(colorPart, x + dx1, y + dy);
|
|
84
94
|
}
|
|
85
|
-
const placeX = (maxWord[wordIdx] ?? 0) - (maxWord[0] ?? 0);
|
|
86
|
-
if (left || textSize > w) {
|
|
95
|
+
const placeX = (opts.maxWord[opts.wordIdx] ?? 0) - (opts.maxWord[0] ?? 0);
|
|
96
|
+
if (opts.left || textSize > w) {
|
|
87
97
|
draw(placeX, placeX + maxColorTextSize);
|
|
88
98
|
return x + placeX + maxColorTextSize + grayPartSize;
|
|
89
99
|
}
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"cell-renderer.js","sourceRoot":"","sources":["cell-renderer.ts"],"names":[],"mappings":"AAIA,OAAO,EAAC,cAAc,EAAC,MAAM,uBAAuB,CAAC;AAGrD,MAAM,cAAc,GAAG,kBAAkB,CAAC;AAC1C,MAAM,SAAS,GAAG,SAAS,CAAC;AAC5B,MAAM,UAAU,GAAG,YAAY,CAAC;AAChC,MAAM,sBAAsB,GAA0D,cAAc,CAAC;AAErG,MAAM,CAAN,IAAY,IAEX;AAFD,WAAY,IAAI;IACd,8DAAsD,CAAA;AACxD,CAAC,EAFW,IAAI,KAAJ,IAAI,QAEf;AAED,MAAM,CAAN,IAAY,SAGX;AAHD,WAAY,SAAS;IACnB,wBAAW,CAAA;IACX,gCAAmB,CAAA;AACrB,CAAC,EAHW,SAAS,KAAT,SAAS,QAGpB;AAED
|
|
1
|
+
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