@datagrok-libraries/bio 5.41.2 → 5.41.3

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Files changed (6) hide show
  1. package/CHANGELOG.md +4 -0
  2. package/package.json +1 -1
  3. package/src/utils/cell-renderer-monomer-placer.d.ts +1 -0
  4. package/src/utils/cell-renderer-monomer-placer.d.ts.map +1 -1
  5. package/src/utils/cell-renderer-monomer-placer.js +23 -25
  6. package/src/utils/cell-renderer-monomer-placer.js.map +1 -1
package/CHANGELOG.md CHANGED
@@ -1,5 +1,9 @@
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  # bio changelog
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+ ## 5.41.3 (2024-05-15)
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+
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+ Fix cell renderer monomer placer hit test
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+
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  ## 5.41.2 (2024-05-13)
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  ### Bug fixes
package/package.json CHANGED
@@ -8,7 +8,7 @@
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  "access": "public"
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  },
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  "friendlyName": "Datagrok bio library",
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- "version": "5.41.2",
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+ "version": "5.41.3",
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  "description": "Bio utilities, types supporting Macromolecule, Molecule3D data",
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  "dependencies": {
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  "@datagrok-libraries/gridext": "^1.3.71",
package/src/utils/cell-renderer-monomer-placer.d.ts CHANGED
@@ -10,6 +10,7 @@ type MonomerPlacerProps = {
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  monomerToShort: MonomerToShortFunc;
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  monomerLengthLimit: number;
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  };
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+ export declare function hitBounds(bounds: number[], x: number): number | null;
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  export declare class MonomerPlacer extends CellRendererBackBase<string> {
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  private readonly propsProvider;
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  private _monomerLengthList;
package/src/utils/cell-renderer-monomer-placer.d.ts.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"cell-renderer-monomer-placer.d.ts","sourceRoot":"","sources":["cell-renderer-monomer-placer.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAKtC,OAAO,EAAC,UAAU,EAAC,MAAM,eAAe,CAAC;AACzC,OAAO,EAAC,kBAAkB,EAAC,MAAM,iBAAiB,CAAC;AAGnD,OAAO,EAAC,oBAAoB,EAAC,MAAM,2BAA2B,CAAC;AAC/D,OAAO,EAAC,OAAO,EAAC,MAAM,UAAU,CAAC;AAGjC,KAAK,kBAAkB,GAAG;IACxB,UAAU,EAAE,UAAU,CAAC;IACvB,gBAAgB,EAAE,MAAM,CAAC;IAAC,cAAc,EAAE,MAAM,CAAC;IACjD,cAAc,EAAE,kBAAkB,CAAC;IAAC,kBAAkB,EAAE,MAAM,CAAC;CAChE,CAAC;AAEF,qBAAa,aAAc,SAAQ,oBAAoB,CAAC,MAAM,CAAC;IAoB3D,OAAO,CAAC,QAAQ,CAAC,aAAa;IAnBhC,OAAO,CAAC,kBAAkB,CAA2B;IAGrD,OAAO,CAAC,cAAc,CAAK;IACpB,KAAK,EAAE,kBAAkB,CAAC;IACjC,OAAO,CAAC,cAAc,CAAY;IAClC,OAAO,CAAC,6BAA6B,CAAa;IAElD,OAAO,CAAC,QAAQ,CAAkB;IAClC,IAAW,OAAO,IAAI,OAAO,CAA0B;IAEhD,iBAAiB,EAAE;QAAE,CAAC,GAAG,EAAE,MAAM,GAAG,WAAW,CAAA;KAAE,CAAM;IACvD,oBAAoB,EAAE;QAAE,CAAC,GAAG,EAAE,MAAM,GAAG,WAAW,CAAA;KAAE,CAAM;IAEjE,sEAAsE;gBAEpE,OAAO,EAAE,EAAE,CAAC,UAAU,GAAG,IAAI,EAC7B,QAAQ,EAAE,EAAE,CAAC,MAAM,CAAC,MAAM,CAAC,EAC3B,MAAM,EAAE,OAAO,EACE,aAAa,EAAE,MAAM,kBAAkB;cAsBvC,KAAK,IAAI,IAAI;IAQhC,qGAAqG;IAC9F,qBAAqB,CAAC,MAAM,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM,GAAG,CAAC,MAAM,EAAE,EAAE,MAAM,EAAE,CAAC;IAWjF,OAAO,CAAC,2BAA2B;IA8BnC,OAAO,CAAC,8BAA8B;IAmDtC,yCAAyC;IAClC,WAAW,CAAC,MAAM,EAAE,MAAM,EAAE,CAAC,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM,GAAG,MAAM,GAAG,IAAI;IAmCpE,qBAAqB,CAAC,KAAK,EAAE,MAAM,GAAG,IAAI;IAK1C,iBAAiB,CAAC,KAAK,EAAE,MAAM,GAAG,IAAI;IAKtC,KAAK,IAAI,OAAO;CAGxB"}
1
+ {"version":3,"file":"cell-renderer-monomer-placer.d.ts","sourceRoot":"","sources":["cell-renderer-monomer-placer.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAKtC,OAAO,EAAC,UAAU,EAAC,MAAM,eAAe,CAAC;AACzC,OAAO,EAAC,kBAAkB,EAAC,MAAM,iBAAiB,CAAC;AAGnD,OAAO,EAAC,oBAAoB,EAAC,MAAM,2BAA2B,CAAC;AAC/D,OAAO,EAAC,OAAO,EAAC,MAAM,UAAU,CAAC;AAGjC,KAAK,kBAAkB,GAAG;IACxB,UAAU,EAAE,UAAU,CAAC;IACvB,gBAAgB,EAAE,MAAM,CAAC;IAAC,cAAc,EAAE,MAAM,CAAC;IACjD,cAAc,EAAE,kBAAkB,CAAC;IAAC,kBAAkB,EAAE,MAAM,CAAC;CAChE,CAAC;AAEF,wBAAgB,SAAS,CAAC,MAAM,EAAE,MAAM,EAAE,EAAE,CAAC,EAAE,MAAM,GAAG,MAAM,GAAG,IAAI,CAsBpE;AAED,qBAAa,aAAc,SAAQ,oBAAoB,CAAC,MAAM,CAAC;IAoB3D,OAAO,CAAC,QAAQ,CAAC,aAAa;IAnBhC,OAAO,CAAC,kBAAkB,CAA2B;IAGrD,OAAO,CAAC,cAAc,CAAK;IACpB,KAAK,EAAE,kBAAkB,CAAC;IACjC,OAAO,CAAC,cAAc,CAAY;IAClC,OAAO,CAAC,6BAA6B,CAAa;IAElD,OAAO,CAAC,QAAQ,CAAkB;IAClC,IAAW,OAAO,IAAI,OAAO,CAA0B;IAEhD,iBAAiB,EAAE;QAAE,CAAC,GAAG,EAAE,MAAM,GAAG,WAAW,CAAA;KAAE,CAAM;IACvD,oBAAoB,EAAE;QAAE,CAAC,GAAG,EAAE,MAAM,GAAG,WAAW,CAAA;KAAE,CAAM;IAEjE,sEAAsE;gBAEpE,OAAO,EAAE,EAAE,CAAC,UAAU,GAAG,IAAI,EAC7B,QAAQ,EAAE,EAAE,CAAC,MAAM,CAAC,MAAM,CAAC,EAC3B,MAAM,EAAE,OAAO,EACE,aAAa,EAAE,MAAM,kBAAkB;cAsBvC,KAAK,IAAI,IAAI;IAQhC,qGAAqG;IAC9F,qBAAqB,CAAC,MAAM,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM,GAAG,CAAC,MAAM,EAAE,EAAE,MAAM,EAAE,CAAC;IAWjF,OAAO,CAAC,2BAA2B;IA8BnC,OAAO,CAAC,8BAA8B;IAmDtC,yCAAyC;IAClC,WAAW,CAAC,MAAM,EAAE,MAAM,EAAE,CAAC,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM,GAAG,MAAM,GAAG,IAAI;IASpE,qBAAqB,CAAC,KAAK,EAAE,MAAM,GAAG,IAAI;IAK1C,iBAAiB,CAAC,KAAK,EAAE,MAAM,GAAG,IAAI;IAKtC,KAAK,IAAI,OAAO;CAGxB"}
package/src/utils/cell-renderer-monomer-placer.js CHANGED
@@ -3,6 +3,28 @@ import wu from 'wu';
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  import { SeqHandler } from './seq-handler';
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  import { CellRendererBackBase } from './cell-renderer-back-base';
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  import { getMonomerLibHelper } from '../monomer-works/monomer-utils';
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+ export function hitBounds(bounds, x) {
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+ let iterationCount = 100;
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+ let leftI = 0;
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+ let rightI = bounds.length - 1;
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+ let midI;
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+ while (leftI <= rightI) {
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+ midI = Math.floor((rightI + leftI) / 2);
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+ const logVal = { x, leftI, left: bounds[leftI], midI, mid: bounds[midI], rightI, right: bounds[rightI] };
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+ console.debug(`bio lib: hitTestBounds(), ${JSON.stringify(logVal)}`);
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+ if (bounds[midI] <= x && x < bounds[midI + 1])
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+ return midI;
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+ else if (x < bounds[midI])
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+ rightI = midI - 1;
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+ else /* if (bounds[midI + 1] <= x) */
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+ leftI = midI + 1;
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+ if (--iterationCount <= 0) {
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+ throw new Error(`Get position for pointer x = ${x} searching has not converged ` +
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+ `on ${JSON.stringify(bounds)}. `);
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+ }
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+ }
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+ return null;
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+ }
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  export class MonomerPlacer extends CellRendererBackBase {
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  get updated() { return this._updated; }
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  /** View is required to subscribe and handle for data frame changes */
@@ -136,31 +158,7 @@ export class MonomerPlacer extends CellRendererBackBase {
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  const seqMonList = wu(sh.getSplitted(rowIdx).originals).toArray();
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  if (seqMonList.length === 0)
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  return null;
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- let iterationCount = 100;
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- let left = null;
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- let right = seqMonList.length;
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- let found = false;
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- let mid = 0;
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- if (monomerMaxLengthSumList[0] <= x && x < monomerMaxLengthSumList.slice(-1)[0]) {
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- while (!found) {
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- mid = Math.floor((right + (left ?? 0)) / 2);
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- if (x >= monomerMaxLengthSumList[mid] && x <= monomerMaxLengthSumList[mid + 1]) {
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- left = mid;
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- found = true;
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- }
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- else if (x < monomerMaxLengthSumList[mid])
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- right = mid - 1;
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- else if (x > monomerMaxLengthSumList[mid + 1])
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- left = mid + 1;
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- if (left == right)
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- found = true;
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- if (--iterationCount <= 0) {
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- throw new Error(`Get position for pointer x = ${x} searching has not converged ` +
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- `on ${JSON.stringify(monomerMaxLengthSumList)}. `);
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- }
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- }
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- }
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- return left;
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+ return hitBounds(monomerMaxLengthSumList, x);
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  }
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  setMonomerLengthLimit(limit) {
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  this.props.monomerLengthLimit = limit;
package/src/utils/cell-renderer-monomer-placer.js.map CHANGED
@@ -1 +1 @@
1
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