@datagrok-libraries/bio 5.40.0 → 5.40.1

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Files changed (17) hide show
  1. package/CHANGELOG.md +11 -0
  2. package/package.json +1 -1
  3. package/src/utils/cell-renderer-monomer-placer.d.ts +0 -1
  4. package/src/utils/cell-renderer-monomer-placer.d.ts.map +1 -1
  5. package/src/utils/cell-renderer-monomer-placer.js +3 -8
  6. package/src/utils/cell-renderer-monomer-placer.js.map +1 -1
  7. package/src/utils/macromolecule/types.d.ts +6 -2
  8. package/src/utils/macromolecule/types.d.ts.map +1 -1
  9. package/src/utils/macromolecule/types.js.map +1 -1
  10. package/src/utils/macromolecule/utils.d.ts +6 -6
  11. package/src/utils/macromolecule/utils.d.ts.map +1 -1
  12. package/src/utils/macromolecule/utils.js +17 -3
  13. package/src/utils/macromolecule/utils.js.map +1 -1
  14. package/src/utils/seq-handler.d.ts +6 -4
  15. package/src/utils/seq-handler.d.ts.map +1 -1
  16. package/src/utils/seq-handler.js +15 -9
  17. package/src/utils/seq-handler.js.map +1 -1
package/CHANGELOG.md CHANGED
@@ -1,5 +1,16 @@
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  # bio changelog
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+ ## 5.40.1 (2024-04-05)
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+
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+ ### Features
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+
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+ * Add support for custom notations, splitters
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+
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+ ### Bug fixes
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+
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+ bio: Fix monomer placer to render original monomers
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+ bio: Fix SeqHandler.getRegion for out of seq length
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+
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  ## 5.40.0 (2024-03-30)
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  ### Features
package/package.json CHANGED
@@ -8,7 +8,7 @@
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  "access": "public"
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  },
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  "friendlyName": "Datagrok bio library",
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- "version": "5.40.0",
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+ "version": "5.40.1",
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  "description": "Bio utilities, types supporting Macromolecule, Molecule3D data",
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  "dependencies": {
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  "@datagrok-libraries/gridext": "^1.3.68",
package/src/utils/cell-renderer-monomer-placer.d.ts CHANGED
@@ -36,7 +36,6 @@ export declare class MonomerPlacer {
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  private getCellMonomerLengthsForSeqMsa;
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  /** Returns seq position for pointer x */
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  getPosition(rowIdx: number, x: number): number | null;
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- getSeqMonList(rowIdx: number): string[];
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  getMonomer(symbol: string): Monomer | null;
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  setMonomerLengthLimit(limit: number): void;
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  setSeparatorWidth(width: number): void;
package/src/utils/cell-renderer-monomer-placer.d.ts.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"cell-renderer-monomer-placer.d.ts","sourceRoot":"","sources":["cell-renderer-monomer-placer.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAKtC,OAAO,EAAC,UAAU,EAAC,MAAM,eAAe,CAAC;AACzC,OAAO,EAAC,kBAAkB,EAAW,MAAM,iBAAiB,CAAC;AAC7D,OAAO,EAAC,WAAW,EAAE,OAAO,EAAC,MAAM,UAAU,CAAC;AAG9C,KAAK,kBAAkB,GAAG;IACxB,UAAU,EAAE,UAAU,CAAC;IACvB,UAAU,CAAC,EAAE,WAAW,CAAC;IACzB,gBAAgB,EAAE,MAAM,CAAC;IAAC,cAAc,EAAE,MAAM,CAAC;IACjD,cAAc,EAAE,kBAAkB,CAAC;IAAC,kBAAkB,EAAE,MAAM,CAAC;CAChE,CAAC;AASF,qBAAa,aAAa;aAiBN,IAAI,EAAE,EAAE,CAAC,IAAI,GAAG,IAAI;aACpB,GAAG,EAAE,EAAE,CAAC,MAAM,CAAC,MAAM,CAAC;IACtC,OAAO,CAAC,QAAQ,CAAC,aAAa;IAlBhC,OAAO,CAAC,kBAAkB,CAA2B;IAGrD,OAAO,CAAC,cAAc,CAAK;IAC3B,OAAO,CAAC,KAAK,CAAqB;IAClC,OAAO,CAAC,cAAc,CAAY;IAElC,OAAO,CAAC,QAAQ,CAAkB;IAClC,IAAW,OAAO,IAAI,OAAO,CAA0B;IAEhD,iBAAiB,EAAE;QAAE,CAAC,GAAG,EAAE,MAAM,GAAG,WAAW,CAAA;KAAE,CAAM;IACvD,oBAAoB,EAAE;QAAE,CAAC,GAAG,EAAE,MAAM,GAAG,cAAc,CAAA;KAAE,CAAM;IACpE,OAAO,CAAC,QAAQ,CAAC,IAAI,CAAwB;IAE7C,sEAAsE;gBAEpD,IAAI,EAAE,EAAE,CAAC,IAAI,GAAG,IAAI,EACpB,GAAG,EAAE,EAAE,CAAC,MAAM,CAAC,MAAM,CAAC,EACrB,aAAa,EAAE,MAAM,kBAAkB;IAyB1D,OAAO,CAAC,OAAO;IAIf,qGAAqG;IAC9F,qBAAqB,CAAC,MAAM,EAAE,MAAM,GAAG,CAAC,MAAM,EAAE,EAAE,MAAM,EAAE,CAAC;IAWlE,OAAO,CAAC,2BAA2B;IAsBnC,OAAO,CAAC,8BAA8B;IAwCtC,yCAAyC;IAClC,WAAW,CAAC,MAAM,EAAE,MAAM,EAAE,CAAC,EAAE,MAAM,GAAG,MAAM,GAAG,IAAI;IAmC5D,aAAa,CAAC,MAAM,EAAE,MAAM,GAAG,MAAM,EAAE;IAKhC,UAAU,CAAC,MAAM,EAAE,MAAM,GAAG,OAAO,GAAG,IAAI;IAM1C,qBAAqB,CAAC,KAAK,EAAE,MAAM,GAAG,IAAI;IAK1C,iBAAiB,CAAC,KAAK,EAAE,MAAM,GAAG,IAAI;IAKtC,KAAK,IAAI,OAAO;CAGxB"}
1
+ {"version":3,"file":"cell-renderer-monomer-placer.d.ts","sourceRoot":"","sources":["cell-renderer-monomer-placer.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAKtC,OAAO,EAAC,UAAU,EAAC,MAAM,eAAe,CAAC;AACzC,OAAO,EAAC,kBAAkB,EAAW,MAAM,iBAAiB,CAAC;AAC7D,OAAO,EAAC,WAAW,EAAE,OAAO,EAAC,MAAM,UAAU,CAAC;AAI9C,KAAK,kBAAkB,GAAG;IACxB,UAAU,EAAE,UAAU,CAAC;IACvB,UAAU,CAAC,EAAE,WAAW,CAAC;IACzB,gBAAgB,EAAE,MAAM,CAAC;IAAC,cAAc,EAAE,MAAM,CAAC;IACjD,cAAc,EAAE,kBAAkB,CAAC;IAAC,kBAAkB,EAAE,MAAM,CAAC;CAChE,CAAC;AASF,qBAAa,aAAa;aAiBN,IAAI,EAAE,EAAE,CAAC,IAAI,GAAG,IAAI;aACpB,GAAG,EAAE,EAAE,CAAC,MAAM,CAAC,MAAM,CAAC;IACtC,OAAO,CAAC,QAAQ,CAAC,aAAa;IAlBhC,OAAO,CAAC,kBAAkB,CAA2B;IAGrD,OAAO,CAAC,cAAc,CAAK;IAC3B,OAAO,CAAC,KAAK,CAAqB;IAClC,OAAO,CAAC,cAAc,CAAY;IAElC,OAAO,CAAC,QAAQ,CAAkB;IAClC,IAAW,OAAO,IAAI,OAAO,CAA0B;IAEhD,iBAAiB,EAAE;QAAE,CAAC,GAAG,EAAE,MAAM,GAAG,WAAW,CAAA;KAAE,CAAM;IACvD,oBAAoB,EAAE;QAAE,CAAC,GAAG,EAAE,MAAM,GAAG,cAAc,CAAA;KAAE,CAAM;IACpE,OAAO,CAAC,QAAQ,CAAC,IAAI,CAAwB;IAE7C,sEAAsE;gBAEpD,IAAI,EAAE,EAAE,CAAC,IAAI,GAAG,IAAI,EACpB,GAAG,EAAE,EAAE,CAAC,MAAM,CAAC,MAAM,CAAC,EACrB,aAAa,EAAE,MAAM,kBAAkB;IAyB1D,OAAO,CAAC,OAAO;IAIf,qGAAqG;IAC9F,qBAAqB,CAAC,MAAM,EAAE,MAAM,GAAG,CAAC,MAAM,EAAE,EAAE,MAAM,EAAE,CAAC;IAWlE,OAAO,CAAC,2BAA2B;IAsBnC,OAAO,CAAC,8BAA8B;IAwCtC,yCAAyC;IAClC,WAAW,CAAC,MAAM,EAAE,MAAM,EAAE,CAAC,EAAE,MAAM,GAAG,MAAM,GAAG,IAAI;IAkCrD,UAAU,CAAC,MAAM,EAAE,MAAM,GAAG,OAAO,GAAG,IAAI;IAM1C,qBAAqB,CAAC,KAAK,EAAE,MAAM,GAAG,IAAI;IAK1C,iBAAiB,CAAC,KAAK,EAAE,MAAM,GAAG,IAAI;IAKtC,KAAK,IAAI,OAAO;CAGxB"}
package/src/utils/cell-renderer-monomer-placer.js CHANGED
@@ -68,7 +68,7 @@ export class MonomerPlacer {
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  }
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  let res = this._monomerLengthList[rowIdx];
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  if (res === null) {
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- const seqMonList = this.getSeqMonList(rowIdx);
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+ const seqMonList = SeqHandler.forColumn(this.col).getSplitted(rowIdx).originals;
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  res = this._monomerLengthList[rowIdx] = new Array(seqMonList.length);
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  for (const [seqMonLabel, seqMonI] of wu.enumerate(seqMonList)) {
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  const shortMon = this.props.monomerToShort(seqMonLabel, this.props.monomerLengthLimit);
@@ -108,7 +108,7 @@ export class MonomerPlacer {
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  for (let seqIdx = startIdx; seqIdx < endIdx; seqIdx++) {
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  if (this._rowsProcessed.get(seqIdx))
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  continue;
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- const seqMonList = this.getSeqMonList(seqIdx);
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+ const seqMonList = SeqHandler.forColumn(this.col).getSplitted(seqIdx).originals;
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  if (seqMonList.length > res.length)
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  res.push(...new Array(seqMonList.length - res.length).fill(0));
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  for (const [seqMonLabel, seqMonI] of wu.enumerate(seqMonList)) {
@@ -124,8 +124,7 @@ export class MonomerPlacer {
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  getPosition(rowIdx, x) {
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  const [_monomerMaxLengthList, monomerMaxLengthSumList] = this.getCellMonomerLengths(rowIdx);
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  const sh = SeqHandler.forColumn(this.col);
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- const seq = this.col.get(rowIdx);
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- const seqMonList = wu(sh.getSplitted(rowIdx).canonicals).map((cm) => cm).toArray();
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+ const seqMonList = wu(sh.getSplitted(rowIdx).originals).toArray();
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  if (seqMonList.length === 0)
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  return null;
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  let iterationCount = 100;
@@ -154,10 +153,6 @@ export class MonomerPlacer {
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  }
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  return left;
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  }
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- getSeqMonList(rowIdx) {
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- const sh = SeqHandler.forColumn(this.col);
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- return wu(sh.getSplitted(rowIdx).canonicals).map((cm) => cm).toArray();
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- }
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  getMonomer(symbol) {
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  const alphabet = this.props.seqHandler.alphabet ?? "UN" /* ALPHABET.UN */;
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  const polymerType = polymerTypeMap[alphabet];
package/src/utils/cell-renderer-monomer-placer.js.map CHANGED
@@ -1 +1 @@
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package/src/utils/macromolecule/types.d.ts CHANGED
@@ -1,8 +1,9 @@
1
1
  /** Canonical gap symbol */
2
2
  export declare const GAP_SYMBOL: string;
3
+ export type SeqSplittedBase = ArrayLike<string> & Iterable<string>;
3
4
  export interface ISeqSplitted {
4
- get canonicals(): Iterable<string>;
5
- get originals(): Iterable<string>;
5
+ get canonicals(): SeqSplittedBase;
6
+ get originals(): SeqSplittedBase;
6
7
  isGap(posIdx: number): boolean;
7
8
  /** */
8
9
  getCanonical(posIdx: number): string;
@@ -10,6 +11,9 @@ export interface ISeqSplitted {
10
11
  getOriginal(posIdx: number): string;
11
12
  length: number;
12
13
  }
14
+ export interface INotationProvider {
15
+ get splitter(): SplitterFunc;
16
+ }
13
17
  export type SeqColStats = {
14
18
  freq: MonomerFreqs;
15
19
  sameLength: boolean;
package/src/utils/macromolecule/types.d.ts.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"types.d.ts","sourceRoot":"","sources":["types.ts"],"names":[],"mappings":"AAOA,2BAA2B;AAC3B,eAAO,MAAM,UAAU,EAAE,MAAW,CAAC;AAErC,MAAM,WAAW,YAAY;IAC3B,IAAI,UAAU,IAAI,QAAQ,CAAC,MAAM,CAAC,CAAC;IACnC,IAAI,SAAS,IAAI,QAAQ,CAAC,MAAM,CAAC,CAAC;IAElC,KAAK,CAAC,MAAM,EAAE,MAAM,GAAG,OAAO,CAAC;IAE/B,MAAM;IACN,YAAY,CAAC,MAAM,EAAE,MAAM,GAAG,MAAM,CAAC;IAErC,uEAAuE;IACvE,WAAW,CAAC,MAAM,EAAE,MAAM,GAAG,MAAM,CAAC;IAEpC,MAAM,EAAE,MAAM,CAAC;CAChB;AAED,MAAM,MAAM,WAAW,GAAG;IAAE,IAAI,EAAE,YAAY,CAAC;IAAC,UAAU,EAAE,OAAO,CAAA;CAAE,CAAA;AACrE,MAAM,MAAM,YAAY,GAAG,CAAC,GAAG,EAAE,MAAM,KAAK,YAAY,CAAC;AACzD,MAAM,MAAM,YAAY,GAAG;IAAE,CAAC,CAAC,EAAE,MAAM,GAAG,MAAM,CAAA;CAAE,CAAC;AAEnD,8BAA8B;AAC9B,qBAAa,aAAa;IACxB,IAAI,EAAE,MAAM,CAAC;IACb,QAAQ,EAAE,GAAG,CAAC,MAAM,CAAC,CAAC;IACtB,MAAM,EAAE,MAAM,CAAC;gBAEH,IAAI,EAAE,MAAM,EAAE,QAAQ,EAAE,GAAG,CAAC,MAAM,CAAC,EAAE,MAAM,EAAE,MAAM;CAKhE;AAED,yCAAyC;AACzC,qBAAa,gBAAiB,SAAQ,aAAa;IACjD,IAAI,EAAE,YAAY,CAAC;IACnB,4BAA4B;IAC5B,UAAU,EAAE,MAAM,CAAC;gBAEP,SAAS,EAAE,aAAa,EAAE,IAAI,EAAE,YAAY,EAAE,UAAU,EAAE,MAAM;CAK7E"}
1
+ {"version":3,"file":"types.d.ts","sourceRoot":"","sources":["types.ts"],"names":[],"mappings":"AAOA,2BAA2B;AAC3B,eAAO,MAAM,UAAU,EAAE,MAAW,CAAC;AAErC,MAAM,MAAM,eAAe,GAAG,SAAS,CAAC,MAAM,CAAC,GAAG,QAAQ,CAAC,MAAM,CAAC,CAAC;AAEnE,MAAM,WAAW,YAAY;IAC3B,IAAI,UAAU,IAAI,eAAe,CAAC;IAClC,IAAI,SAAS,IAAI,eAAe,CAAC;IAEjC,KAAK,CAAC,MAAM,EAAE,MAAM,GAAG,OAAO,CAAC;IAE/B,MAAM;IACN,YAAY,CAAC,MAAM,EAAE,MAAM,GAAG,MAAM,CAAC;IAErC,uEAAuE;IACvE,WAAW,CAAC,MAAM,EAAE,MAAM,GAAG,MAAM,CAAC;IAEpC,MAAM,EAAE,MAAM,CAAC;CAChB;AAED,MAAM,WAAW,iBAAiB;IAChC,IAAI,QAAQ,IAAI,YAAY,CAAC;CAC9B;AAED,MAAM,MAAM,WAAW,GAAG;IAAE,IAAI,EAAE,YAAY,CAAC;IAAC,UAAU,EAAE,OAAO,CAAA;CAAE,CAAA;AACrE,MAAM,MAAM,YAAY,GAAG,CAAC,GAAG,EAAE,MAAM,KAAK,YAAY,CAAC;AACzD,MAAM,MAAM,YAAY,GAAG;IAAE,CAAC,CAAC,EAAE,MAAM,GAAG,MAAM,CAAA;CAAE,CAAC;AAEnD,8BAA8B;AAC9B,qBAAa,aAAa;IACxB,IAAI,EAAE,MAAM,CAAC;IACb,QAAQ,EAAE,GAAG,CAAC,MAAM,CAAC,CAAC;IACtB,MAAM,EAAE,MAAM,CAAC;gBAEH,IAAI,EAAE,MAAM,EAAE,QAAQ,EAAE,GAAG,CAAC,MAAM,CAAC,EAAE,MAAM,EAAE,MAAM;CAKhE;AAED,yCAAyC;AACzC,qBAAa,gBAAiB,SAAQ,aAAa;IACjD,IAAI,EAAE,YAAY,CAAC;IACnB,4BAA4B;IAC5B,UAAU,EAAE,MAAM,CAAC;gBAEP,SAAS,EAAE,aAAa,EAAE,IAAI,EAAE,YAAY,EAAE,UAAU,EAAE,MAAM;CAK7E"}
package/src/utils/macromolecule/types.js.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"types.js","sourceRoot":"","sources":["types.ts"],"names":[],"mappings":"AAOA,2BAA2B;AAC3B,MAAM,CAAC,MAAM,UAAU,GAAW,EAAE,CAAC;AAqBrC,8BAA8B;AAC9B,MAAM,OAAO,aAAa;IAKxB,YAAY,IAAY,EAAE,QAAqB,EAAE,MAAc;QAC7D,IAAI,CAAC,IAAI,GAAG,IAAI,CAAC;QACjB,IAAI,CAAC,QAAQ,GAAG,QAAQ,CAAC;QACzB,IAAI,CAAC,MAAM,GAAG,MAAM,CAAC;IACvB,CAAC;CACF;AAED,yCAAyC;AACzC,MAAM,OAAO,gBAAiB,SAAQ,aAAa;IAKjD,YAAY,SAAwB,EAAE,IAAkB,EAAE,UAAkB;QAC1E,KAAK,CAAC,SAAS,CAAC,IAAI,EAAE,SAAS,CAAC,QAAQ,EAAE,SAAS,CAAC,MAAM,CAAC,CAAC;QAC5D,IAAI,CAAC,IAAI,GAAG,IAAI,CAAC;QACjB,IAAI,CAAC,UAAU,GAAG,UAAU,CAAC;IAC/B,CAAC;CACF"}
1
+ {"version":3,"file":"types.js","sourceRoot":"","sources":["types.ts"],"names":[],"mappings":"AAOA,2BAA2B;AAC3B,MAAM,CAAC,MAAM,UAAU,GAAW,EAAE,CAAC;AA2BrC,8BAA8B;AAC9B,MAAM,OAAO,aAAa;IAKxB,YAAY,IAAY,EAAE,QAAqB,EAAE,MAAc;QAC7D,IAAI,CAAC,IAAI,GAAG,IAAI,CAAC;QACjB,IAAI,CAAC,QAAQ,GAAG,QAAQ,CAAC;QACzB,IAAI,CAAC,MAAM,GAAG,MAAM,CAAC;IACvB,CAAC;CACF;AAED,yCAAyC;AACzC,MAAM,OAAO,gBAAiB,SAAQ,aAAa;IAKjD,YAAY,SAAwB,EAAE,IAAkB,EAAE,UAAkB;QAC1E,KAAK,CAAC,SAAS,CAAC,IAAI,EAAE,SAAS,CAAC,QAAQ,EAAE,SAAS,CAAC,MAAM,CAAC,CAAC;QAC5D,IAAI,CAAC,IAAI,GAAG,IAAI,CAAC;QACjB,IAAI,CAAC,UAAU,GAAG,UAAU,CAAC;IAC/B,CAAC;CACF"}
package/src/utils/macromolecule/utils.d.ts CHANGED
@@ -1,23 +1,23 @@
1
1
  import * as DG from 'datagrok-api/dg';
2
- import { CandidateType, ISeqSplitted, MonomerFreqs, SeqColStats, SplitterFunc } from './types';
2
+ import { CandidateType, ISeqSplitted, MonomerFreqs, SeqColStats, SeqSplittedBase, SplitterFunc } from './types';
3
3
  import { ALPHABET } from './consts';
4
4
  import { SeqPalette } from '../../seq-palettes';
5
5
  export declare class StringListSeqSplitted implements ISeqSplitted {
6
6
  private readonly mList;
7
7
  private readonly gapOriginalMonomer;
8
8
  get length(): number;
9
- get canonicals(): Iterable<string>;
10
- get originals(): Iterable<string>;
9
+ get canonicals(): SeqSplittedBase;
10
+ get originals(): SeqSplittedBase;
11
11
  isGap(posIdx: number): boolean;
12
12
  getCanonical(posIdx: number): string;
13
13
  getOriginal(posIdx: number): string;
14
- constructor(mList: string[], gapOriginalMonomer: string);
14
+ constructor(mList: SeqSplittedBase, gapOriginalMonomer: string);
15
15
  }
16
16
  export declare class FastaSimpleSeqSplitted implements ISeqSplitted {
17
17
  private readonly seqS;
18
18
  get length(): number;
19
- get canonicals(): Iterable<string>;
20
- get originals(): Iterable<string>;
19
+ get canonicals(): string;
20
+ get originals(): string;
21
21
  isGap(posIdx: number): boolean;
22
22
  getCanonical(posIdx: number): string;
23
23
  getOriginal(posIdx: number): string;
package/src/utils/macromolecule/utils.d.ts.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"utils.d.ts","sourceRoot":"","sources":["utils.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAGtC,OAAO,EAEL,aAAa,EACb,YAAY,EACZ,YAAY,EACZ,WAAW,EACX,YAAY,EACb,MAAM,SAAS,CAAC;AACjB,OAAO,EAAC,QAAQ,EAAqD,MAAM,UAAU,CAAC;AAItF,OAAO,EAAC,UAAU,EAAC,MAAM,oBAAoB,CAAC;AAK9C,qBAAa,qBAAsB,YAAW,YAAY;IAgBtD,OAAO,CAAC,QAAQ,CAAC,KAAK;IACtB,OAAO,CAAC,QAAQ,CAAC,kBAAkB;IAhBrC,IAAI,MAAM,IAAI,MAAM,CAA8B;IAElD,IAAI,UAAU,IAAI,QAAQ,CAAC,MAAM,CAAC,CAAuB;IAEzD,IAAI,SAAS,IAAI,QAAQ,CAAC,MAAM,CAAC,CAAuB;IAExD,KAAK,CAAC,MAAM,EAAE,MAAM,GAAG,OAAO;IAI9B,YAAY,CAAC,MAAM,EAAE,MAAM,GAAG,MAAM;IAEpC,WAAW,CAAC,MAAM,EAAE,MAAM,GAAG,MAAM;gBAGhB,KAAK,EAAE,MAAM,EAAE,EACf,kBAAkB,EAAE,MAAM;CAE9C;AAED,qBAAa,sBAAuB,YAAW,YAAY;IAqBvD,OAAO,CAAC,QAAQ,CAAC,IAAI;IApBvB,IAAI,MAAM,IAAI,MAAM,CAA6B;IAEjD,IAAI,UAAU,IAAI,QAAQ,CAAC,MAAM,CAAC,CAAsB;IAExD,IAAI,SAAS,IAAI,QAAQ,CAAC,MAAM,CAAC,CAAsB;IAEvD,KAAK,CAAC,MAAM,EAAE,MAAM,GAAG,OAAO;IAI9B,YAAY,CAAC,MAAM,EAAE,MAAM,GAAG,MAAM;IAOpC,WAAW,CAAC,MAAM,EAAE,MAAM,GAAG,MAAM;gBAGhB,IAAI,EAAE,MAAM;CAEhC;AAED;;;;;GAKG;AACH,wBAAgB,cAAc,CAAC,MAAM,EAAE,EAAE,CAAC,MAAM,CAAC,MAAM,CAAC,EAAE,SAAS,EAAE,MAAM,EAAE,QAAQ,EAAE,YAAY,GAAG,WAAW,CAKhH;AAwBD;;;;GAIG;AACH,eAAO,MAAM,eAAe,EAAE,YAc7B,CAAC;AAEF,eAAO,MAAM,qBAAqB,EAAE,YAEnC,CAAC;AAEF;;;;GAIG;AACH,wBAAgB,wBAAwB,CAAC,SAAS,EAAE,MAAM,EAAE,KAAK,GAAE,MAAM,GAAG,SAAqB,GAAG,YAAY,CAS/G;AAMD;;;;;GAKG;AACH,eAAO,MAAM,cAAc,EAAE,YAgB5B,CAAC;AAEF,4EAA4E;AAC5E,MAAM,MAAM,kBAAkB,GAAG,CAAC,YAAY,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM,KAAK,MAAM,CAAC;AAEjF;;;;;GAKG;AACH,wBAAgB,WAAW,CAAC,KAAK,EAAE,MAAM,EAAE,SAAS,EAAE,MAAM,EAAE,KAAK,GAAE,MAAM,GAAG,SAAqB,GAAG,YAAY,CAWjH;AAID,+CAA+C;AAC/C,wBAAgB,cAAc,CAAC,KAAK,EAAE,MAAM,EAAE,kBAAkB,EAAE,MAAM,GAAG,MAAM,CAQhF;AAED,MAAM;AACN,wBAAgB,WAAW,CAAC,QAAQ,EAAE,QAAQ,GAAG,GAAG,CAAC,MAAM,CAAC,CAW3D;AAED;;;;;GAKG;AACH,wBAAgB,qBAAqB,CAAC,IAAI,EAAE,YAAY,EAAE,QAAQ,EAAE,GAAG,CAAC,MAAM,CAAC,EAAE,SAAS,GAAE,MAAY,GAAG,MAAM,CAchH;AAED,+BAA+B;AAC/B,wBAAgB,cAAc,CAAC,IAAI,EAAE,YAAY,EAAE,UAAU,EAAE,aAAa,EAAE,EAAE,SAAS,GAAE,MAAY,UAetG;AAED;;;;GAIG;AACH,wBAAgB,aAAa,CAAC,MAAM,EAAE,EAAE,CAAC,MAAM,EAAE,SAAS,GAAE,MAAU,GAAG,UAAU,CAYlF;AAED,wBAAgB,gBAAgB,CAAC,WAAW,EAAE,MAAM,GAAG,UAAU,CAWhE;AAED,wBAAgB,YAAY,CAAC,EAAE,EAAE,EAAE,CAAC,SAAS,GAAG,EAAE,CAAC,MAAM,CAAC,MAAM,CAAC,GAAG,IAAI,CASvE"}
1
+ {"version":3,"file":"utils.d.ts","sourceRoot":"","sources":["utils.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAGtC,OAAO,EAEL,aAAa,EACb,YAAY,EACZ,YAAY,EACZ,WAAW,EAAE,eAAe,EAC5B,YAAY,EACb,MAAM,SAAS,CAAC;AACjB,OAAO,EAAC,QAAQ,EAAqD,MAAM,UAAU,CAAC;AAItF,OAAO,EAAC,UAAU,EAAC,MAAM,oBAAoB,CAAC;AAK9C,qBAAa,qBAAsB,YAAW,YAAY;IAwBtD,OAAO,CAAC,QAAQ,CAAC,KAAK;IACtB,OAAO,CAAC,QAAQ,CAAC,kBAAkB;IAxBrC,IAAI,MAAM,IAAI,MAAM,CAA8B;IAElD,IAAI,UAAU,oBAAyB;IAEvC,IAAI,SAAS,oBAAyB;IAEtC,KAAK,CAAC,MAAM,EAAE,MAAM,GAAG,OAAO;IAI9B,YAAY,CAAC,MAAM,EAAE,MAAM,GAAG,MAAM;IAMpC,WAAW,CAAC,MAAM,EAAE,MAAM,GAAG,MAAM;gBAOhB,KAAK,EAAE,eAAe,EACtB,kBAAkB,EAAE,MAAM;CAE9C;AAED,qBAAa,sBAAuB,YAAW,YAAY;IA0BvD,OAAO,CAAC,QAAQ,CAAC,IAAI;IAzBvB,IAAI,MAAM,IAAI,MAAM,CAA6B;IAEjD,IAAI,UAAU,WAAwB;IAEtC,IAAI,SAAS,WAAwB;IAErC,KAAK,CAAC,MAAM,EAAE,MAAM,GAAG,OAAO;IAI9B,YAAY,CAAC,MAAM,EAAE,MAAM,GAAG,MAAM;IAQpC,WAAW,CAAC,MAAM,EAAE,MAAM,GAAG,MAAM;gBAOhB,IAAI,EAAE,MAAM;CAEhC;AAED;;;;;GAKG;AACH,wBAAgB,cAAc,CAAC,MAAM,EAAE,EAAE,CAAC,MAAM,CAAC,MAAM,CAAC,EAAE,SAAS,EAAE,MAAM,EAAE,QAAQ,EAAE,YAAY,GAAG,WAAW,CAKhH;AAwBD;;;;GAIG;AACH,eAAO,MAAM,eAAe,EAAE,YAc7B,CAAC;AAEF,eAAO,MAAM,qBAAqB,EAAE,YAEnC,CAAC;AAEF;;;;GAIG;AACH,wBAAgB,wBAAwB,CAAC,SAAS,EAAE,MAAM,EAAE,KAAK,GAAE,MAAM,GAAG,SAAqB,GAAG,YAAY,CAS/G;AAMD;;;;;GAKG;AACH,eAAO,MAAM,cAAc,EAAE,YAgB5B,CAAC;AAEF,4EAA4E;AAC5E,MAAM,MAAM,kBAAkB,GAAG,CAAC,YAAY,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM,KAAK,MAAM,CAAC;AAEjF;;;;;GAKG;AACH,wBAAgB,WAAW,CAAC,KAAK,EAAE,MAAM,EAAE,SAAS,EAAE,MAAM,EAAE,KAAK,GAAE,MAAM,GAAG,SAAqB,GAAG,YAAY,CAWjH;AAID,+CAA+C;AAC/C,wBAAgB,cAAc,CAAC,KAAK,EAAE,MAAM,EAAE,kBAAkB,EAAE,MAAM,GAAG,MAAM,CAQhF;AAED,MAAM;AACN,wBAAgB,WAAW,CAAC,QAAQ,EAAE,QAAQ,GAAG,GAAG,CAAC,MAAM,CAAC,CAW3D;AAED;;;;;GAKG;AACH,wBAAgB,qBAAqB,CAAC,IAAI,EAAE,YAAY,EAAE,QAAQ,EAAE,GAAG,CAAC,MAAM,CAAC,EAAE,SAAS,GAAE,MAAY,GAAG,MAAM,CAchH;AAED,+BAA+B;AAC/B,wBAAgB,cAAc,CAAC,IAAI,EAAE,YAAY,EAAE,UAAU,EAAE,aAAa,EAAE,EAAE,SAAS,GAAE,MAAY,UAetG;AAED;;;;GAIG;AACH,wBAAgB,aAAa,CAAC,MAAM,EAAE,EAAE,CAAC,MAAM,EAAE,SAAS,GAAE,MAAU,GAAG,UAAU,CAYlF;AAED,wBAAgB,gBAAgB,CAAC,WAAW,EAAE,MAAM,GAAG,UAAU,CAWhE;AAED,wBAAgB,YAAY,CAAC,EAAE,EAAE,EAAE,CAAC,SAAS,GAAG,EAAE,CAAC,MAAM,CAAC,MAAM,CAAC,GAAG,IAAI,CASvE"}
package/src/utils/macromolecule/utils.js CHANGED
@@ -15,8 +15,16 @@ export class StringListSeqSplitted {
15
15
  isGap(posIdx) {
16
16
  return this.getOriginal(posIdx) === this.gapOriginalMonomer;
17
17
  }
18
- getCanonical(posIdx) { return this.mList[posIdx]; }
19
- getOriginal(posIdx) { return this.mList[posIdx]; }
18
+ getCanonical(posIdx) {
19
+ if (this.length <= posIdx)
20
+ throw new Error('Index out of bounds');
21
+ return this.mList[posIdx];
22
+ }
23
+ getOriginal(posIdx) {
24
+ if (this.length <= posIdx)
25
+ throw new Error('Index out of bounds');
26
+ return this.mList[posIdx];
27
+ }
20
28
  constructor(mList, gapOriginalMonomer) {
21
29
  this.mList = mList;
22
30
  this.gapOriginalMonomer = gapOriginalMonomer;
@@ -30,11 +38,17 @@ export class FastaSimpleSeqSplitted {
30
38
  return this.getOriginal(posIdx) === GapOriginals[NOTATION.FASTA];
31
39
  }
32
40
  getCanonical(posIdx) {
41
+ if (this.length <= posIdx)
42
+ throw new Error('Index out of bounds');
33
43
  if (this.isGap(posIdx))
34
44
  return GAP_SYMBOL;
35
45
  return this.seqS[posIdx];
36
46
  }
37
- getOriginal(posIdx) { return this.seqS[posIdx]; }
47
+ getOriginal(posIdx) {
48
+ if (this.length <= posIdx)
49
+ throw new Error('Index out of bounds');
50
+ return this.seqS[posIdx];
51
+ }
38
52
  constructor(seqS) {
39
53
  this.seqS = seqS;
40
54
  }
package/src/utils/macromolecule/utils.js.map CHANGED
@@ -1 +1 @@
1
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package/src/utils/seq-handler.d.ts CHANGED
@@ -1,11 +1,12 @@
1
1
  import * as DG from 'datagrok-api/dg';
2
2
  import { NOTATION } from './macromolecule';
3
- import { ISeqSplitted, SeqColStats, SplitterFunc } from './macromolecule/types';
3
+ import { ISeqSplitted, SeqColStats, SplitterFunc, INotationProvider } from './macromolecule/types';
4
4
  import { MmDistanceFunctionsNames } from '@datagrok-libraries/ml/src/macromolecule-distance-functions';
5
5
  import { mmDistanceFunctionType } from '@datagrok-libraries/ml/src/macromolecule-distance-functions/types';
6
- export declare const Temps: {
7
- /** Column's temp slot name for a UnitsHandler object */
8
- uh: string;
6
+ export declare const SeqTemps: {
7
+ /** Column's temp slot name for a SeqHandler object */
8
+ seqHandler: string;
9
+ notationProvider: string;
9
10
  };
10
11
  export declare const GapOriginals: {
11
12
  [units: string]: string;
@@ -21,6 +22,7 @@ export declare class SeqHandler {
21
22
  protected readonly _units: string;
22
23
  protected readonly _notation: NOTATION;
23
24
  protected readonly _defaultGapOriginal: string;
25
+ protected readonly notationProvider: INotationProvider | null;
24
26
  private _splitter;
25
27
  protected constructor(col: DG.Column<string>);
26
28
  static setUnitsToFastaColumn(uh: SeqHandler): void;
package/src/utils/seq-handler.d.ts.map CHANGED
@@ -1 +1 @@
1
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1
+ {"version":3,"file":"seq-handler.d.ts","sourceRoot":"","sources":["seq-handler.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAItC,OAAO,EACsB,QAAQ,EAEpC,MAAM,iBAAiB,CAAC;AACzB,OAAO,EAEL,YAAY,EAAE,WAAW,EAAE,YAAY,EAAE,iBAAiB,EAC3D,MAAM,uBAAuB,CAAC;AAE/B,OAAO,EACgB,wBAAwB,EAC9C,MAAM,6DAA6D,CAAC;AACrE,OAAO,EAAC,sBAAsB,EAAC,MAAM,mEAAmE,CAAC;AAIzG,eAAO,MAAM,QAAQ;IACnB,sDAAsD;;;CAGrD,CAAC;AAEJ,eAAO,MAAM,YAAY,EAAE;IACzB,CAAC,KAAK,EAAE,MAAM,GAAG,MAAM,CAAA;CAKxB,CAAC;AAEF,MAAM,MAAM,WAAW,GAAG,CAAC,GAAG,EAAE,MAAM,KAAK,MAAM,CAAC;AAClD,MAAM,MAAM,UAAU,GAAG,CAAC,GAAG,EAAE,YAAY,KAAK,MAAM,CAAC;AAEvD;;GAEG;AACH,qBAAa,UAAU;IACrB,SAAS,CAAC,QAAQ,CAAC,OAAO,EAAE,EAAE,CAAC,MAAM,CAAC;IACtC,SAAS,CAAC,QAAQ,CAAC,cAAc,EAAE,MAAM,CAAC;IAC1C,SAAS,CAAC,QAAQ,CAAC,MAAM,EAAE,MAAM,CAAC;IAClC,SAAS,CAAC,QAAQ,CAAC,SAAS,EAAE,QAAQ,CAAC;IACvC,SAAS,CAAC,QAAQ,CAAC,mBAAmB,EAAE,MAAM,CAAC;IAC/C,SAAS,CAAC,QAAQ,CAAC,gBAAgB,EAAE,iBAAiB,GAAG,IAAI,CAAC;IAE9D,OAAO,CAAC,SAAS,CAA6B;IAE9C,SAAS,aAAa,GAAG,EAAE,EAAE,CAAC,MAAM,CAAC,MAAM,CAAC;WAoD9B,qBAAqB,CAAC,EAAE,EAAE,UAAU;WAQpC,yBAAyB,CAAC,EAAE,EAAE,UAAU,EAAE,SAAS,CAAC,EAAE,MAAM;WAW5D,oBAAoB,CAAC,EAAE,EAAE,UAAU;IAQjD,+BAA+B;WACjB,OAAO,CAAC,EAAE,EAAE,UAAU,GAAG,IAAI;IA8B3C,SAAS,KAAK,MAAM,IAAI,EAAE,CAAC,MAAM,CAAyB;IAE1D,IAAW,MAAM,IAAI,MAAM,CAAgC;IAE3D,IAAW,KAAK,IAAI,MAAM,CAAwB;IAElD,IAAW,QAAQ,IAAI,QAAQ,CAA2B;IAE1D,IAAW,kBAAkB,IAAI,MAAM,CAAqC;IAE5E,IAAW,SAAS,IAAI,MAAM,GAAG,SAAS,CAKzC;IAED,IAAW,OAAO,IAAI,MAAM,CAQ3B;IAED,iCAAiC;IACjC,IAAW,QAAQ,IAAI,MAAM,CAQ5B;IAED,SAAS,KAAK,cAAc,IAAI,MAAM,GAAG,SAAS,CAEjD;IAEM,eAAe,IAAI,MAAM;IA4BzB,sBAAsB,IAAI,OAAO;IASxC,OAAO,CAAC,MAAM,CAAiB;IAC/B,OAAO,CAAC,SAAS,CAAwC;IACzD,OAAO,CAAC,aAAa,CAAuB;IAiBrC,WAAW,CAAC,MAAM,EAAE,MAAM,GAAG,YAAY;IAoBhD,OAAO,CAAC,MAAM,CAA4B;IAE1C,IAAW,KAAK,IAAI,WAAW,CAuB9B;IAED,OAAO,CAAC,UAAU,CAAuB;IACzC,IAAW,SAAS,IAAI,MAAM,CAM7B;IAED,OAAO,CAAC,QAAQ,CAAyB;IACzC,IAAW,OAAO,IAAI,MAAM,EAAE,CAO7B;IAEM,OAAO,IAAI,OAAO;IAElB,WAAW,IAAI,OAAO;IAEtB,MAAM,IAAI,OAAO;IAEjB,KAAK,IAAI,OAAO;IAEhB,KAAK,IAAI,OAAO;IAEhB,SAAS,IAAI,OAAO;IAEpB,KAAK,IAAI,OAAO;IAEhB,gBAAgB,IAAI,OAAO;IAElC;;;OAGG;IACI,KAAK,CAAC,EAAE,EAAE,MAAM,GAAG,OAAO;IAIjC,4DAA4D;IAC5D;;OAEG;IACH,SAAS,CAAC,WAAW,IAAI,QAAQ;IAYjC;;;;;OAKG;IACI,eAAe,IAAI,MAAM,EAAE;IAWlC;;;;;;OAMG;IACH,SAAS,CAAC,YAAY,CACpB,WAAW,EAAE,QAAQ,EAAE,YAAY,CAAC,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,MAAM,EAAE,IAAI,CAAC,EAAE,MAAM,EAAE,GAC9E,EAAE,CAAC,MAAM,CAAC,MAAM,CAAC;IAuCpB,yEAAyE;IAClE,oBAAoB,CAAC,IAAI,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,EAAE,GAAG,EAAE,CAAC,MAAM,CAAC,MAAM,CAAC;IAI/E;;;;;;OAMG;WACW,YAAY,CAAC,WAAW,EAAE,EAAE,CAAC,MAAM,GAAG,EAAE,CAAC,MAAM;IAM7D;;;;;OAKG;WACW,kBAAkB,CAAC,KAAK,EAAE,MAAM,GAAG,OAAO;IASxD;;;;;;;;OAQG;WACW,sBAAsB,CAClC,GAAG,EAAE,MAAM,EACX,IAAI,EAAE,MAAM,EACZ,KAAK,EAAE,MAAM,GACZ,EAAE,CAAC,MAAM;IAYZ,mDAAmD;IACnD,SAAS,CAAC,WAAW,CAAC,KAAK,CAAC,EAAE,MAAM,GAAG,YAAY;IAqB5C,KAAK,CAAC,GAAG,EAAE,MAAM,GAAG,YAAY;IAIhC,uBAAuB,IAAI,wBAAwB;IAoBnD,mBAAmB,IAAI,sBAAsB;IAKvC,sBAAsB,IAAI,OAAO,CAAC,OAAO,CAAC;IAuCvD,SAAS,KAAK,QAAQ,IAAI,YAAY,CAIrC;IAEM,OAAO,CAAC,cAAc,EAAE,QAAQ,GAAG,OAAO;IAE1C,WAAW,CAAC,cAAc,EAAE,QAAQ,GAAG,OAAO;IAE9C,MAAM,CAAC,cAAc,EAAE,QAAQ,GAAG,OAAO;IAEhD;;;;;;;;;OASG;IACI,2BAA2B,CAChC,MAAM,EAAE,MAAM,EAAE,WAAW,EAAE,MAAM,EAAE,YAAY,CAAC,EAAE,MAAM,EAAE,cAAc,CAAC,EAAE,MAAM,GAClF,MAAM;IA8BT;;;;;OAKG;IACI,OAAO,CAAC,WAAW,EAAE,QAAQ,EAAE,YAAY,CAAC,EAAE,MAAM,GAAG,EAAE,CAAC,MAAM,CAAC,MAAM,CAAC;IAa/E;;;;OAIG;IACI,SAAS,CAAC,QAAQ,EAAE,MAAM,GAAG,IAAI,EAAE,MAAM,EAAE,MAAM,GAAG,IAAI,EAAE,IAAI,EAAE,MAAM,GAAG,EAAE,CAAC,MAAM,CAAC,MAAM,CAAC;IAyCjG,OAAO,CAAC,OAAO,CAAC,CAAyB;IAEzC,IAAW,MAAM,IAAI,UAAU,CAK9B;IAEM,SAAS,CAAC,IAAI,CAAC,EAAE;QAAE,QAAQ,EAAE,QAAQ,CAAC;QAAC,SAAS,CAAC,EAAE,MAAM,CAAA;KAAE,GAAG,UAAU;IA6BxE,YAAY,CAAC,QAAQ,EAAE,QAAQ,EAAE,YAAY,GAAE,MAAM,GAAG,SAAqB,GAAG,WAAW;IAelG,0GAA0G;WAC5F,SAAS,CAAC,GAAG,EAAE,EAAE,CAAC,MAAM,CAAC,MAAM,CAAC,GAAG,UAAU;IAU3D,OAAO,CAAC,WAAW;IAoBnB,OAAO,CAAC,cAAc;IAMtB,OAAO,CAAC,kBAAkB;IAK1B,OAAO,CAAC,aAAa;IAQrB,sGAAsG;IACtG,OAAO,CAAC,kBAAkB;CAe3B"}
package/src/utils/seq-handler.js CHANGED
@@ -6,10 +6,11 @@ import { detectAlphabet, splitterAsFastaSimple, StringListSeqSplitted } from './
6
6
  import { mmDistanceFunctions, MmDistanceFunctionsNames } from '@datagrok-libraries/ml/src/macromolecule-distance-functions';
7
7
  import { getMonomerLibHelper } from '../monomer-works/monomer-utils';
8
8
  import { HELM_WRAPPERS_REGEXP, PHOSPHATE_SYMBOL } from './const';
9
- export const Temps = new class {
9
+ export const SeqTemps = new class {
10
10
  constructor() {
11
- /** Column's temp slot name for a UnitsHandler object */
12
- this.uh = `units-handler.${DG.SEMTYPE.MACROMOLECULE}`;
11
+ /** Column's temp slot name for a SeqHandler object */
12
+ this.seqHandler = `seq-handler`;
13
+ this.notationProvider = `seq-handler.notation-provider`;
13
14
  }
14
15
  }();
15
16
  export const GapOriginals = {
@@ -74,6 +75,7 @@ export class SeqHandler {
74
75
  `tag '${".alphabetIsMultichar" /* TAGS.alphabetIsMultichar */}' is mandatory.`);
75
76
  }
76
77
  }
78
+ this.notationProvider = this.column.temp[SeqTemps.notationProvider] ?? null;
77
79
  }
78
80
  static setUnitsToFastaColumn(uh) {
79
81
  if (uh.column.semType !== DG.SEMTYPE.MACROMOLECULE || uh.column.getTag(DG.TAGS.UNITS) !== NOTATION.FASTA)
@@ -395,6 +397,10 @@ export class SeqHandler {
395
397
  }
396
398
  /** Gets function to split seq value to monomers */
397
399
  getSplitter(limit) {
400
+ let splitter = null;
401
+ splitter = this.notationProvider ? this.notationProvider.splitter : null;
402
+ if (splitter)
403
+ return splitter;
398
404
  if (this.units.toLowerCase().startsWith(NOTATION.FASTA)) {
399
405
  const alphabet = this.column.getTag("alphabet" /* TAGS.alphabet */);
400
406
  if (alphabet !== null && !this.getAlphabetIsMultichar())
@@ -546,18 +552,18 @@ export class SeqHandler {
546
552
  regCol.name = name;
547
553
  const startIdxVal = startIdx ?? 0;
548
554
  const endIdxVal = endIdx ?? this.maxLength - 1;
549
- const join = this.getJoiner();
555
+ const joiner = this.getJoiner();
550
556
  const regLength = endIdxVal - startIdxVal + 1;
557
+ const gapOM = GapOriginals[this.notation];
551
558
  regCol.init((rowI) => {
552
559
  const seqS = this.getSplitted(rowI);
553
560
  // Custom slicing instead of array method to maintain gaps
554
561
  const regOMList = new Array(regLength);
555
562
  for (let regJPos = 0; regJPos < regLength; ++regJPos) {
556
563
  const seqJPos = startIdxVal + regJPos;
557
- const seqOM = seqS.getOriginal(seqJPos);
558
- regOMList[regJPos] = seqJPos < seqS.length ? seqOM : GapOriginals[this.notation];
564
+ regOMList[regJPos] = seqJPos < seqS.length ? seqS.getOriginal(seqJPos) : gapOM;
559
565
  }
560
- return join(new StringListSeqSplitted(regOMList, GapOriginals[this.notation]));
566
+ return joiner(new StringListSeqSplitted(regOMList, gapOM));
561
567
  });
562
568
  const getRegionOfPositionNames = (str) => {
563
569
  const srcPosList = str.split(',').map((p) => p.trim());
@@ -624,9 +630,9 @@ export class SeqHandler {
624
630
  /** Gets a column's UnitsHandler object from temp slot or creates a new and stores it to the temp slot. */
625
631
  static forColumn(col) {
626
632
  // TODO: Invalidate col.temp[Temps.uh] checking column's metadata
627
- let res = col.temp[Temps.uh];
633
+ let res = col.temp[SeqTemps.seqHandler];
628
634
  if (!res || res.columnVersion !== col.version)
629
- res = col.temp[Temps.uh] = new SeqHandler(col);
635
+ res = col.temp[SeqTemps.seqHandler] = new SeqHandler(col);
630
636
  return res;
631
637
  }
632
638
  // -- joiners & converters --
package/src/utils/seq-handler.js.map CHANGED
@@ -1 +1 @@
1
- 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