@datagrok-libraries/bio 5.39.7 → 5.39.9
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/package.json +1 -1
- package/src/utils/fasta-handler.d.ts.map +1 -1
- package/src/utils/fasta-handler.js.map +1 -1
- package/src/viewers/ngl-gl-service.d.ts +30 -0
- package/src/viewers/ngl-gl-service.d.ts.map +1 -0
- package/src/viewers/ngl-gl-service.js +11 -0
- package/src/viewers/ngl-gl-service.js.map +1 -0
- package/src/viewers/ngl-gl-viewer.d.ts +0 -26
- package/src/viewers/ngl-gl-viewer.d.ts.map +1 -1
- package/src/viewers/ngl-gl-viewer.js +0 -14
- package/src/viewers/ngl-gl-viewer.js.map +1 -1
package/package.json
CHANGED
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@@ -1 +1 @@
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1
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-
{"version":3,"file":"fasta-handler.d.ts","sourceRoot":"","sources":["fasta-handler.ts"],"names":[],"mappings":"AAGA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;
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1
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+
{"version":3,"file":"fasta-handler.d.ts","sourceRoot":"","sources":["fasta-handler.ts"],"names":[],"mappings":"AAGA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAKtC,oCAAoC;AACpC,qBAAa,gBAAgB;IAC3B,OAAO,CAAC,YAAY,CAAS;IAC7B,OAAO,CAAC,kBAAkB,CAAgB;IAC1C,OAAO,CAAC,eAAe,CAAgB;IAGvC,IAAW,iBAAiB,IAAI,MAAM,EAAE,CAAoC;IAE5E,IAAW,cAAc,IAAI,MAAM,EAAE,CAAiC;IAEtE;;;;;;;OAOG;IACH,OAAO,CAAC,kBAAkB;IAS1B,2DAA2D;IAC3D,OAAO,CAAC,YAAY;IAiBpB;;;;OAIG;IACI,WAAW,IAAI,EAAE,CAAC,SAAS,EAAG;gBAezB,WAAW,EAAE,MAAM;CAIhC"}
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@@ -1 +1 @@
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1
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-
{"version":3,"file":"fasta-handler.js","sourceRoot":"","sources":["fasta-handler.ts"],"names":[],"mappings":"AAGA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAEtC,OAAO,EAAC,YAAY,EAAC,MAAM,iBAAiB,CAAC;AAC7C,OAAO,EAAC,QAAQ,EAAC,MAAM,wBAAwB,CAAC;
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1
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{"version":3,"file":"fasta-handler.js","sourceRoot":"","sources":["fasta-handler.ts"],"names":[],"mappings":"AAGA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAEtC,OAAO,EAAC,YAAY,EAAC,MAAM,iBAAiB,CAAC;AAC7C,OAAO,EAAC,QAAQ,EAAC,MAAM,wBAAwB,CAAC;AAEhD,oCAAoC;AACpC,MAAM,OAAO,gBAAgB;IAI3B,2CAA2C;IAE3C,IAAW,iBAAiB,KAAe,OAAO,IAAI,CAAC,kBAAkB,CAAC,CAAC,CAAC;IAE5E,IAAW,cAAc,KAAe,OAAO,IAAI,CAAC,eAAe,CAAC,CAAC,CAAC;IAEtE;;;;;;;OAOG;IACK,kBAAkB,CACxB,eAAuB,EACvB,aAAqB;QAErB,MAAM,GAAG,GAAG,IAAI,CAAC,YAAY,CAAC,KAAK,CAAC,eAAe,EAAE,aAAa,CAAC,CAAC;QACpE,MAAM,QAAQ,GAAG,GAAG,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC;QACjC,OAAO,QAAQ,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;IAC3B,CAAC;IAED,2DAA2D;IACnD,YAAY;QAClB,MAAM,KAAK,GAAG,WAAW,CAAC,CAAC,4CAA4C;QAEvE,IAAI,eAAe,GAAG,CAAC,CAAC;QACxB,IAAI,KAAK,CAAC,CAAC,mDAAmD;QAC9D,OAAO,KAAK,GAAG,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,YAAY,CAAC,EAAE;YAC5C,MAAM,WAAW,GAAG,IAAI,CAAC,YAAY,CAAC,SAAS,CAAC,KAAK,CAAC,KAAK,GAAG,CAAC,EAAE,KAAK,CAAC,SAAS,CAAC,CAAC;YAClF,IAAI,CAAC,kBAAkB,CAAC,IAAI,CAAC,WAAW,CAAC,CAAC;YAC1C,IAAI,eAAe,KAAK,CAAC;gBACvB,IAAI,CAAC,eAAe,CAAC,IAAI,CAAC,IAAI,CAAC,kBAAkB,CAAC,eAAe,EAAE,KAAK,CAAC,KAAK,CAAC,CAAC,CAAC;YACnF,eAAe,GAAG,KAAK,CAAC,SAAS,GAAG,CAAC,CAAC;SACvC;QACD,IAAI,CAAC,eAAe,CAAC,IAAI,CAAC,IAAI,CAAC,kBAAkB,CAAC,eAAe,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC;QAExE,8BAA8B;IAChC,CAAC;IAED;;;;OAIG;IACI,WAAW;QAChB,MAAM,oBAAoB,GAAG,EAAE,CAAC,MAAM,CAAC,WAAW,CAAC,aAAa,EAAE,IAAI,CAAC,iBAAiB,CAAC,CAAC;QAC1F,MAAM,WAAW,GAAG,EAAE,CAAC,MAAM,CAAC,WAAW,CAAC,UAAU,EAAE,IAAI,CAAC,cAAc,CAAC,CAAC;QAC3E,WAAW,CAAC,OAAO,GAAG,EAAE,CAAC,OAAO,CAAC,aAAa,CAAC;QAC/C,WAAW,CAAC,MAAM,CAAC,EAAE,CAAC,IAAI,CAAC,KAAK,EAAE,QAAQ,CAAC,KAAK,CAAC,CAAC;QAElD,6CAA6C;QAC7C,MAAM,EAAE,GAAG,YAAY,CAAC,WAAW,CAAC,WAAW,CAAC,CAAC;QAEjD,OAAO,CAAC,EAAE,CAAC,SAAS,CAAC,WAAW,CAAC;gBAC/B,oBAAoB;gBACpB,WAAW;aACZ,CAAC,CAAC,CAAC;IACN,CAAC;IAED,YAAY,WAAmB;QA/DvB,uBAAkB,GAAa,EAAE,CAAC,CAAC,4BAA4B;QAC/D,oBAAe,GAAa,EAAE,CAAC,CAAC,wBAAwB;QA+D9D,IAAI,CAAC,YAAY,GAAG,WAAW,CAAC;QAChC,IAAI,CAAC,YAAY,EAAE,CAAC;IACtB,CAAC;CACF"}
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@@ -0,0 +1,30 @@
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import * as DG from 'datagrok-api/dg';
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export type NglGlTask = {
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name: string;
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backColor: number;
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props: {
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width: number;
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height: number;
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} & {
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[propName: string]: any;
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};
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onAfterRender: (canvas: HTMLCanvasElement) => void;
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};
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export declare abstract class NglGlServiceBase {
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abstract get errorCount(): number;
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/** Disposes MolstarViewer to free WebGL context */
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abstract reset(): Promise<void>;
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/** Queues NglGl render task
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* @param key Specify to skip previously queued tasks with the same key
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*/
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abstract render(args: NglGlTask, key?: keyof any): void;
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/** Default implementation of rendering tree on grid cell
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* @param gCtx Context to draw on grid
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* @param bd Bound rect to clip drawing on task moment
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* @param gCell Grid cell to draw
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* @param canvas Image of the tree rendered
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*/
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abstract renderOnGridCell(gCtx: CanvasRenderingContext2D, bd: DG.Rect, gCell: DG.GridCell, canvas: CanvasImageSource): void;
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}
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export declare function getNglGlService(): Promise<NglGlServiceBase>;
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//# sourceMappingURL=ngl-gl-service.d.ts.map
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@@ -0,0 +1 @@
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{"version":3,"file":"ngl-gl-service.d.ts","sourceRoot":"","sources":["ngl-gl-service.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAEtC,MAAM,MAAM,SAAS,GAAG;IACtB,IAAI,EAAE,MAAM,CAAC;IACb,SAAS,EAAE,MAAM,CAAC;IAClB,KAAK,EAAE;QAAE,KAAK,EAAE,MAAM,CAAC;QAAC,MAAM,EAAE,MAAM,CAAA;KAAE,GAAG;QAAE,CAAC,QAAQ,EAAE,MAAM,GAAG,GAAG,CAAA;KAAE,CAAC;IACvE,aAAa,EAAE,CAAC,MAAM,EAAE,iBAAiB,KAAK,IAAI,CAAA;CACnD,CAAC;AAEF,8BAAsB,gBAAgB;IACpC,QAAQ,KAAK,UAAU,IAAI,MAAM,CAAC;IAElC,mDAAmD;IACnD,QAAQ,CAAC,KAAK,IAAI,OAAO,CAAC,IAAI,CAAC;IAE/B;;OAEG;IACH,QAAQ,CAAC,MAAM,CAAC,IAAI,EAAE,SAAS,EAAE,GAAG,CAAC,EAAE,MAAM,GAAG,GAAG,IAAI;IAEvD;;;;;OAKG;IACH,QAAQ,CAAC,gBAAgB,CACvB,IAAI,EAAE,wBAAwB,EAAE,EAAE,EAAE,EAAE,CAAC,IAAI,EAAE,KAAK,EAAE,EAAE,CAAC,QAAQ,EAAE,MAAM,EAAE,iBAAiB,GAAG,IAAI;CACpG;AAGD,wBAAsB,eAAe,IAAI,OAAO,CAAC,gBAAgB,CAAC,CAOjE"}
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import * as DG from 'datagrok-api/dg';
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export class NglGlServiceBase {
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}
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export async function getNglGlService() {
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const funcList = DG.Func.find({ package: 'BiostructureViewer', name: 'getNglGlService' });
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if (funcList.length === 0)
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throw new Error('Package "BiostructureViewer" must be installed for NglGl services.');
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const svc = (await funcList[0].prepare().call()).getOutputParamValue();
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return svc;
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}
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//# sourceMappingURL=ngl-gl-service.js.map
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{"version":3,"file":"ngl-gl-service.js","sourceRoot":"","sources":["ngl-gl-service.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAStC,MAAM,OAAgB,gBAAgB;CAmBrC;AAGD,MAAM,CAAC,KAAK,UAAU,eAAe;IACnC,MAAM,QAAQ,GAAG,EAAE,CAAC,IAAI,CAAC,IAAI,CAAC,EAAC,OAAO,EAAE,oBAAoB,EAAE,IAAI,EAAE,iBAAiB,EAAC,CAAC,CAAC;IACxF,IAAI,QAAQ,CAAC,MAAM,KAAK,CAAC;QACvB,MAAM,IAAI,KAAK,CAAC,oEAAoE,CAAC,CAAC;IAExF,MAAM,GAAG,GAAqB,CAAC,MAAM,QAAQ,CAAC,CAAC,CAAC,CAAC,OAAO,EAAE,CAAC,IAAI,EAAE,CAAC,CAAC,mBAAmB,EAAsB,CAAC;IAC7G,OAAO,GAAG,CAAC;AACb,CAAC"}
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@@ -34,30 +34,4 @@ declare module 'datagrok-api/dg' {
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fromType(viewerType: 'NGL', options: Partial<NglProps>): Promise<DG.Viewer<NglProps> & INglViewer>;
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}
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}
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export type NglGlTask = {
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name: string;
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backColor: number;
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props: {
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[propName: string]: any;
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};
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onAfterRender: (canvas: HTMLCanvasElement) => Promise<void>;
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};
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export declare abstract class NglGlServiceBase {
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static noneSource: {
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type: string;
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data: any;
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};
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/** Queues NglGl render task
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* @param key Specify to skip previously queued tasks with the same key
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*/
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abstract render(args: NglGlTask, key?: keyof any): void;
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/** Default implementation of rendering tree on grid cell
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* @param gCtx Context to draw on grid
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* @param bd Bound rect to clip drawing on task moment
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* @param gCell Grid cell to draw
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* @param canvas Image of the tree rendered
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*/
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abstract renderOnGridCell(gCtx: CanvasRenderingContext2D, bd: DG.Rect, gCell: DG.GridCell, canvas: CanvasImageSource): void;
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}
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export declare function getNglGlService(): Promise<NglGlServiceBase>;
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//# sourceMappingURL=ngl-gl-viewer.d.ts.map
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{"version":3,"file":"ngl-gl-viewer.d.ts","sourceRoot":"","sources":["ngl-gl-viewer.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAEtC,OAAO,EAAC,OAAO,EAAC,MAAM,UAAU,CAAC;AACjC,OAAO,EAAC,UAAU,EAAC,MAAM,MAAM,CAAC;AAMhC,MAAM,MAAM,aAAa,GAAG;IAAE,CAAC,QAAQ,EAAE,MAAM,GAAG,GAAG,CAAA;CAAE,CAAC;AACxD,MAAM,MAAM,UAAU,GAAG;IAAE,CAAC,QAAQ,EAAE,MAAM,GAAG,aAAa,CAAA;CAAE,CAAC;AAE/D,oBAAY,kBAAkB;IAC5B,OAAO,YAAY;IACnB,QAAQ,aAAa;IACrB,YAAY,eAAe;IAC3B,QAAQ,aAAa;IACrB,SAAS,cAAc;IACvB,OAAO,YAAY;CACpB;AAED,eAAO,MAAM,eAAe;SAErB,MAAM,GAAG,IAAI;YACV,MAAM,GAAG,IAAI;sBACH,MAAM,GAAG,IAAI;oBAGf,kBAAkB;6BAIT,OAAO;0BACV,OAAO;4BACL,OAAO;CAC9B,CAAC;AAGJ,MAAM,MAAM,QAAQ,GAAG,OAAO,eAAe,CAAC;AAE9C,MAAM,WAAW,UAAW,SAAQ,OAAO;IACzC,UAAU,CAAC,OAAO,EAAE,OAAO,CAAC,QAAQ,CAAC,GAAG,IAAI,CAAC;IAE7C,IAAI,gBAAgB,IAAI,UAAU,CAAC,IAAI,CAAC,CAAC;CAC1C;AAED,OAAO,QAAQ,iBAAiB,CAAC;IAC/B,UAAU,mBAAmB;QAC3B,QAAQ,CAAC,UAAU,EAAE,KAAK,EAAE,OAAO,EAAE,OAAO,CAAC,QAAQ,CAAC,GAAG,OAAO,CAAC,EAAE,CAAC,MAAM,CAAC,QAAQ,CAAC,GAAG,UAAU,CAAC,CAAC;KACpG;CACF
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{"version":3,"file":"ngl-gl-viewer.d.ts","sourceRoot":"","sources":["ngl-gl-viewer.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAEtC,OAAO,EAAC,OAAO,EAAC,MAAM,UAAU,CAAC;AACjC,OAAO,EAAC,UAAU,EAAC,MAAM,MAAM,CAAC;AAMhC,MAAM,MAAM,aAAa,GAAG;IAAE,CAAC,QAAQ,EAAE,MAAM,GAAG,GAAG,CAAA;CAAE,CAAC;AACxD,MAAM,MAAM,UAAU,GAAG;IAAE,CAAC,QAAQ,EAAE,MAAM,GAAG,aAAa,CAAA;CAAE,CAAC;AAE/D,oBAAY,kBAAkB;IAC5B,OAAO,YAAY;IACnB,QAAQ,aAAa;IACrB,YAAY,eAAe;IAC3B,QAAQ,aAAa;IACrB,SAAS,cAAc;IACvB,OAAO,YAAY;CACpB;AAED,eAAO,MAAM,eAAe;SAErB,MAAM,GAAG,IAAI;YACV,MAAM,GAAG,IAAI;sBACH,MAAM,GAAG,IAAI;oBAGf,kBAAkB;6BAIT,OAAO;0BACV,OAAO;4BACL,OAAO;CAC9B,CAAC;AAGJ,MAAM,MAAM,QAAQ,GAAG,OAAO,eAAe,CAAC;AAE9C,MAAM,WAAW,UAAW,SAAQ,OAAO;IACzC,UAAU,CAAC,OAAO,EAAE,OAAO,CAAC,QAAQ,CAAC,GAAG,IAAI,CAAC;IAE7C,IAAI,gBAAgB,IAAI,UAAU,CAAC,IAAI,CAAC,CAAC;CAC1C;AAED,OAAO,QAAQ,iBAAiB,CAAC;IAC/B,UAAU,mBAAmB;QAC3B,QAAQ,CAAC,UAAU,EAAE,KAAK,EAAE,OAAO,EAAE,OAAO,CAAC,QAAQ,CAAC,GAAG,OAAO,CAAC,EAAE,CAAC,MAAM,CAAC,QAAQ,CAAC,GAAG,UAAU,CAAC,CAAC;KACpG;CACF"}
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import * as DG from 'datagrok-api/dg';
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import { TAGS as pdbTAGS } from '../pdb/index';
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export var RepresentationType;
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NglGlServiceBase.noneSource = {
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type: 'biojs',
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data: { name: 'none', branch_length: 1, children: [] }
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};
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export async function getNglGlService() {
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const funcList = DG.Func.find({ package: 'BiostructureViewer', name: 'getNglGlService' });
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throw new Error('Package "BiostructureViewer" must be installed for NglGl services.');
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const svc = (await funcList[0].prepare().call()).getOutputParamValue();
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}
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{"version":3,"file":"ngl-gl-viewer.js","sourceRoot":"","sources":["ngl-gl-viewer.ts"],"names":[],"mappings":"
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{"version":3,"file":"ngl-gl-viewer.js","sourceRoot":"","sources":["ngl-gl-viewer.ts"],"names":[],"mappings":"AAQA,OAAO,EAAC,IAAI,IAAI,OAAO,EAAC,MAAM,cAAc,CAAC;AAM7C,MAAM,CAAN,IAAY,kBAOX;AAPD,WAAY,kBAAkB;IAC5B,yCAAmB,CAAA;IACnB,2CAAqB,CAAA;IACrB,iDAA2B,CAAA;IAC3B,2CAAqB,CAAA;IACrB,6CAAuB,CAAA;IACvB,yCAAmB,CAAA;AACrB,CAAC,EAPW,kBAAkB,KAAlB,kBAAkB,QAO7B;AAED,MAAM,CAAC,MAAM,eAAe,GAAG,IAAI;IAAA;QACjC,aAAa;QACb,QAAG,GAAkB,IAAI,CAAC;QAC1B,WAAM,GAAkB,OAAO,CAAC,GAAG,CAAC;QACpC,qBAAgB,GAAkB,IAAI,CAAC;QAEvC,cAAc;QACd,mBAAc,GAAuB,kBAAkB,CAAC,OAAO,CAAC;QAEhE,kBAAkB;QAElB,4BAAuB,GAAY,KAAK,CAAC;QACzC,yBAAoB,GAAY,IAAI,CAAC;QACrC,2BAAsB,GAAY,IAAI,CAAC;IACzC,CAAC;CAAA,EAAE,CAAC"}
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