@datagrok-libraries/bio 5.39.15 → 5.39.17
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/CHANGELOG.md +1 -0
- package/package.json +1 -1
- package/src/pdb/types.d.ts +7 -9
- package/src/pdb/types.d.ts.map +1 -1
- package/src/pdb/types.js +10 -11
- package/src/pdb/types.js.map +1 -1
- package/src/utils/macromolecule/alignment.d.ts +14 -0
- package/src/utils/macromolecule/alignment.d.ts.map +1 -0
- package/src/utils/macromolecule/alignment.js +76 -0
- package/src/utils/macromolecule/alignment.js.map +1 -0
- package/src/utils/syncer.d.ts.map +1 -1
- package/src/utils/syncer.js.map +1 -1
- package/src/viewers/molstar-viewer.d.ts +2 -2
- package/src/viewers/molstar-viewer.d.ts.map +1 -1
- package/src/viewers/molstar-viewer.js +1 -1
- package/src/viewers/molstar-viewer.js.map +1 -1
- package/src/viewers/ngl-gl-viewer.d.ts +1 -2
- package/src/viewers/ngl-gl-viewer.d.ts.map +1 -1
- package/src/viewers/ngl-gl-viewer.js +1 -1
- package/src/viewers/ngl-gl-viewer.js.map +1 -1
package/CHANGELOG.md
CHANGED
package/package.json
CHANGED
package/src/pdb/types.d.ts
CHANGED
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@@ -8,14 +8,12 @@ export type BiostructureData = {
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dataLabel?: string;
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};
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};
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static fromData(src: BiostructureData): string;
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static toData(src: string): BiostructureData;
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/** Return {@link BiostructureData} (jsonified to {@link string}) by identifier value of type {@link string}. */
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export type BiostructureDataProviderFunc = DataProviderFunc<string, string>;
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export declare namespace BiostructureDataJson {
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const empty: string;
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/** {@link DG.Viewer} does not support a property of type extending String even completely compatible */
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function fromData(src: BiostructureData): string;
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function toData(src: string): BiostructureData;
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}
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//# sourceMappingURL=types.d.ts.map
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package/src/pdb/types.d.ts.map
CHANGED
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@@ -1 +1 @@
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{"version":3,"file":"types.d.ts","sourceRoot":"","sources":["types.ts"],"names":[],"mappings":"AAMA,OAAO,EAAC,gBAAgB,EAAC,MAAM,wBAAwB,CAAC;AAExD,MAAM,MAAM,gBAAgB,GAAG;IAC7B,MAAM,EAAE,OAAO,CAAC;IAChB,GAAG,EAAE,MAAM,CAAC;IACZ,IAAI,EAAE,MAAM,GAAG,UAAU,CAAC;IAC1B,OAAO,CAAC,EAAE;QAAE,IAAI,CAAC,EAAE,MAAM,CAAC;QAAC,SAAS,CAAC,EAAE,MAAM,CAAC;KAAE,CAAC;CAClD,CAAA;AAED,MAAM,MAAM,4BAA4B,GAAG,gBAAgB,CAAC,MAAM,EAAE,
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{"version":3,"file":"types.d.ts","sourceRoot":"","sources":["types.ts"],"names":[],"mappings":"AAMA,OAAO,EAAC,gBAAgB,EAAC,MAAM,wBAAwB,CAAC;AAExD,MAAM,MAAM,gBAAgB,GAAG;IAC7B,MAAM,EAAE,OAAO,CAAC;IAChB,GAAG,EAAE,MAAM,CAAC;IACZ,IAAI,EAAE,MAAM,GAAG,UAAU,CAAC;IAC1B,OAAO,CAAC,EAAE;QAAE,IAAI,CAAC,EAAE,MAAM,CAAC;QAAC,SAAS,CAAC,EAAE,MAAM,CAAC;KAAE,CAAC;CAClD,CAAA;AAED,gHAAgH;AAChH,MAAM,MAAM,4BAA4B,GAAG,gBAAgB,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;AAE5E,yBAAiB,oBAAoB,CAAC;IAG7B,MAAM,KAAK,EAAE,MAAe,CAAC;IAEpC,wGAAwG;IACxG,SAAgB,QAAQ,CAAC,GAAG,EAAE,gBAAgB,GAAG,MAAM,CAGtD;IAED,SAAgB,MAAM,CAAC,GAAG,EAAE,MAAM,GAAG,gBAAgB,CAIpD;CACF"}
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package/src/pdb/types.js
CHANGED
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@@ -1,21 +1,20 @@
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import { Base64 } from 'js-base64';
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*/
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}
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static fromData(src) {
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export var BiostructureDataJson;
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(function (BiostructureDataJson) {
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/* avoid static methods */
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BiostructureDataJson.empty = 'null';
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/** {@link DG.Viewer} does not support a property of type extending String even completely compatible */
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function fromData(src) {
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const dataStr = src.binary ? Base64.fromUint8Array(src.data) : src.data;
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return JSON.stringify({ data: dataStr, ext: src.ext, binary: src.binary, options: src.options });
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}
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BiostructureDataJson.fromData = fromData;
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function toData(src) {
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const data = JSON.parse(src);
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if (data)
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data.data = data.binary ? Base64.toUint8Array(data.data) : data.data;
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return data;
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}
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BiostructureDataJson
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BiostructureDataJson.toData = toData;
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})(BiostructureDataJson || (BiostructureDataJson = {}));
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//# sourceMappingURL=types.js.map
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package/src/pdb/types.js.map
CHANGED
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{"version":3,"file":"types.js","sourceRoot":"","sources":["types.ts"],"names":[],"mappings":"AAIA,OAAO,EAAC,MAAM,EAAC,MAAM,WAAW,CAAC;
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{"version":3,"file":"types.js","sourceRoot":"","sources":["types.ts"],"names":[],"mappings":"AAIA,OAAO,EAAC,MAAM,EAAC,MAAM,WAAW,CAAC;AAcjC,MAAM,KAAW,oBAAoB,CAgBpC;AAhBD,WAAiB,oBAAoB;IACnC,0BAA0B;IAEb,0BAAK,GAAW,MAAM,CAAC;IAEpC,wGAAwG;IACxG,SAAgB,QAAQ,CAAC,GAAqB;QAC5C,MAAM,OAAO,GAAG,GAAG,CAAC,MAAM,CAAC,CAAC,CAAC,MAAM,CAAC,cAAc,CAAC,GAAG,CAAC,IAAkB,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,IAAc,CAAC;QAChG,OAAO,IAAI,CAAC,SAAS,CAAC,EAAC,IAAI,EAAE,OAAO,EAAE,GAAG,EAAE,GAAG,CAAC,GAAG,EAAE,MAAM,EAAE,GAAG,CAAC,MAAM,EAAE,OAAO,EAAE,GAAG,CAAC,OAAO,EAAC,CAAC,CAAC;IACjG,CAAC;IAHe,6BAAQ,WAGvB,CAAA;IAED,SAAgB,MAAM,CAAC,GAAW;QAChC,MAAM,IAAI,GAAG,IAAI,CAAC,KAAK,CAAC,GAAwB,CAAC,CAAC;QAClD,IAAI,IAAI;YAAE,IAAI,CAAC,IAAI,GAAG,IAAI,CAAC,MAAM,CAAC,CAAC,CAAC,MAAM,CAAC,YAAY,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC;QAC/E,OAAO,IAAI,CAAC;IACd,CAAC;IAJe,2BAAM,SAIrB,CAAA;AACH,CAAC,EAhBgB,oBAAoB,KAApB,oBAAoB,QAgBpC"}
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export type AlignmentOptions = {
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gapPenalty: number;
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matchScore: number;
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gapSymbol: string;
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localAlignment: boolean;
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};
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export declare const defaultAlignmentOptions: AlignmentOptions;
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export declare function alignSequencePair<T extends string | string[]>(template: T, seq: T, alignmentOptions?: Partial<AlignmentOptions>): {
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seq1: string;
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seq2: string;
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seq1Splitted: string[];
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seq2Splitted: string[];
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};
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//# sourceMappingURL=alignment.d.ts.map
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{"version":3,"file":"alignment.d.ts","sourceRoot":"","sources":["alignment.ts"],"names":[],"mappings":"AAAA,MAAM,MAAM,gBAAgB,GAAG;IAC3B,UAAU,EAAE,MAAM,CAAC;IACnB,UAAU,EAAE,MAAM,CAAC;IACnB,SAAS,EAAE,MAAM,CAAC;IAClB,cAAc,EAAE,OAAO,CAAC;CAC3B,CAAA;AAED,eAAO,MAAM,uBAAuB,EAAE,gBAKrC,CAAC;AAEF,wBAAgB,iBAAiB,CAAC,CAAC,SAAS,MAAM,GAAG,MAAM,EAAE,EAAE,QAAQ,EAAE,CAAC,EAAE,GAAG,EAAE,CAAC,EAChF,gBAAgB,GAAE,OAAO,CAAC,gBAAgB,CAAM,GAC/C;IAAC,IAAI,EAAE,MAAM,CAAC;IAAC,IAAI,EAAE,MAAM,CAAC;IAAC,YAAY,EAAE,MAAM,EAAE,CAAC;IAAC,YAAY,EAAE,MAAM,EAAE,CAAA;CAAC,CA+E9E"}
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export const defaultAlignmentOptions = {
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gapPenalty: 1,
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matchScore: 1,
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gapSymbol: '-',
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localAlignment: false,
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};
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export function alignSequencePair(template, seq, alignmentOptions = {}) {
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const options = { ...defaultAlignmentOptions, ...alignmentOptions };
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function compare(c1, c2) {
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return c1 === c2 ? options.matchScore : -options.matchScore;
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}
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const templateLen = template.length;
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const seqLen = seq.length;
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const matrix = Array(templateLen + 1).fill(0).map(() => Array(seqLen + 1).fill(0));
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let maxScore = -9999;
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let index = [1, 1];
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for (let i = 1; i < templateLen + 1; i++) {
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for (let j = 1; j < seqLen + 1; j++) {
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matrix[i][j] = Math.max(0, matrix[i - 1][j - 1] + compare(template[i - 1], seq[j - 1]), matrix[i - 1][j] - options.gapPenalty, matrix[i][j - 1] - options.gapPenalty);
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if (matrix[i][j] >= maxScore) {
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maxScore = matrix[i][j];
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index = [i, j];
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}
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}
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}
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let i = options.localAlignment ? index[0] : templateLen;
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let j = options.localAlignment ? index[1] : seqLen;
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let alignedTemplate = new Array(0);
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let alignedSeq = new Array(0);
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while (i > 0 && j > 0) {
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const mx = Math.max(matrix[i - 1][j - 1], matrix[i - 1][j], matrix[i][j - 1]);
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if (matrix[i][j] == matrix[i - 1][j - 1] + options.matchScore && mx == matrix[i - 1][j - 1]) {
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alignedTemplate.push(template[i - 1]);
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alignedSeq.push(seq[j - 1]);
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i -= 1;
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j -= 1;
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}
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else {
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if (matrix[i][j] == matrix[i - 1][j] - options.gapPenalty) {
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alignedSeq.push(options.gapSymbol.valueOf());
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alignedTemplate.push(template[i - 1]);
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i -= 1;
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}
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else {
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if (matrix[i][j] == matrix[i][j - 1] - options.gapPenalty) {
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alignedTemplate.push(options.gapSymbol.valueOf());
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alignedSeq.push(seq[j - 1]);
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j -= 1;
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}
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else {
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alignedTemplate.push(template[i - 1]);
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alignedSeq.push(seq[j - 1]);
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i -= 1;
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j -= 1;
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}
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}
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}
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}
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alignedTemplate = [...Array.from(template).splice(0, i), ...alignedTemplate.reverse(),
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...(options.localAlignment ? Array.from(template).splice(index[0], templateLen) : [])];
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alignedSeq = [...Array.from(seq).splice(0, j), ...alignedSeq.reverse(),
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...(options.localAlignment ? Array.from(seq).splice(index[1], seqLen) : [])];
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const templateStart = i;
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const seqStart = j;
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if (templateStart > seqStart)
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alignedSeq = [...new Array(templateStart - seqStart).fill(options.gapSymbol.valueOf()), ...alignedSeq];
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else
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alignedTemplate = [...new Array(seqStart - templateStart).fill(options.gapSymbol.valueOf()), ...alignedTemplate];
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if (alignedSeq.length > alignedTemplate.length)
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alignedTemplate.push(...new Array(alignedSeq.length - alignedTemplate.length).fill(options.gapSymbol.valueOf()));
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else
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alignedSeq.push(...new Array(alignedTemplate.length - alignedSeq.length).fill(options.gapSymbol.valueOf()));
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return { seq1: alignedTemplate.join(''), seq2: alignedSeq.join(''),
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seq1Splitted: alignedTemplate, seq2Splitted: alignedSeq };
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}
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//# sourceMappingURL=alignment.js.map
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+
{"version":3,"file":"alignment.js","sourceRoot":"","sources":["alignment.ts"],"names":[],"mappings":"AAOA,MAAM,CAAC,MAAM,uBAAuB,GAAqB;IACvD,UAAU,EAAE,CAAC;IACb,UAAU,EAAE,CAAC;IACb,SAAS,EAAE,GAAG;IACd,cAAc,EAAE,KAAK;CACtB,CAAC;AAEF,MAAM,UAAU,iBAAiB,CAA8B,QAAW,EAAE,GAAM,EAChF,mBAA8C,EAAE;IAEhD,MAAM,OAAO,GAAG,EAAC,GAAG,uBAAuB,EAAE,GAAG,gBAAgB,EAAC,CAAC;IAElE,SAAS,OAAO,CAAC,EAAU,EAAE,EAAU;QACrC,OAAO,EAAE,KAAK,EAAE,CAAC,CAAC,CAAC,OAAO,CAAC,UAAU,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,UAAU,CAAC;IAC9D,CAAC;IACD,MAAM,WAAW,GAAG,QAAQ,CAAC,MAAM,CAAC;IACpC,MAAM,MAAM,GAAG,GAAG,CAAC,MAAM,CAAC;IAE1B,MAAM,MAAM,GAAG,KAAK,CAAC,WAAW,GAAG,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,GAAG,EAAE,CAAC,KAAK,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC;IAEnF,IAAI,QAAQ,GAAG,CAAC,IAAI,CAAC;IACrB,IAAI,KAAK,GAAG,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC;IACnB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,WAAW,GAAG,CAAC,EAAE,CAAC,EAAE,EAAE;QACxC,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,MAAM,GAAG,CAAC,EAAE,CAAC,EAAE,EAAE;YACnC,MAAM,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,EACvB,MAAM,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,GAAG,OAAO,CAAC,QAAQ,CAAC,CAAC,GAAG,CAAC,CAAC,EAAE,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,EAC3D,MAAM,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,OAAO,CAAC,UAAU,EACrC,MAAM,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,GAAG,OAAO,CAAC,UAAU,CAAC,CAAC;YACzC,IAAI,MAAM,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,IAAI,QAAQ,EAAE;gBAC5B,QAAQ,GAAG,MAAM,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;gBACxB,KAAK,GAAG,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC;aAChB;SACF;KACF;IAED,IAAI,CAAC,GAAG,OAAO,CAAC,cAAc,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,WAAW,CAAC;IACxD,IAAI,CAAC,GAAG,OAAO,CAAC,cAAc,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,MAAM,CAAC;IACnD,IAAI,eAAe,GAAG,IAAI,KAAK,CAAS,CAAC,CAAC,CAAC;IAC3C,IAAI,UAAU,GAAG,IAAI,KAAK,CAAS,CAAC,CAAC,CAAC;IAEtC,OAAQ,CAAC,GAAG,CAAC,IAAI,CAAC,GAAG,CAAC,EAAE;QACtB,MAAM,EAAE,GAAG,IAAI,CAAC,GAAG,CAAC,MAAM,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,EAAE,MAAM,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,EAAE,MAAM,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC;QAE9E,IAAI,MAAM,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,IAAI,MAAM,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,GAAG,OAAO,CAAC,UAAU,IAAI,EAAE,IAAI,MAAM,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,EAAE;YAC3F,eAAe,CAAC,IAAI,CAAC,QAAQ,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC;YACtC,UAAU,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC;YAC5B,CAAC,IAAI,CAAC,CAAC;YACP,CAAC,IAAI,CAAC,CAAC;SACR;aAAM;YACL,IAAI,MAAM,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,IAAI,MAAM,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,OAAO,CAAC,UAAU,EAAE;gBACzD,UAAU,CAAC,IAAI,CAAC,OAAO,CAAC,SAAS,CAAC,OAAO,EAAE,CAAC,CAAC;gBAC7C,eAAe,CAAC,IAAI,CAAC,QAAQ,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC;gBACtC,CAAC,IAAI,CAAC,CAAC;aACR;iBAAM;gBACL,IAAI,MAAM,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,IAAI,MAAM,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,GAAG,OAAO,CAAC,UAAU,EAAE;oBACzD,eAAe,CAAC,IAAI,CAAC,OAAO,CAAC,SAAS,CAAC,OAAO,EAAE,CAAC,CAAC;oBAClD,UAAU,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC;oBAC5B,CAAC,IAAI,CAAC,CAAC;iBACR;qBAAM;oBACL,eAAe,CAAC,IAAI,CAAC,QAAQ,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC;oBACtC,UAAU,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC;oBAC5B,CAAC,IAAI,CAAC,CAAC;oBACP,CAAC,IAAI,CAAC,CAAC;iBACR;aACF;SACF;KACF;IACD,eAAe,GAAG,CAAC,GAAG,KAAK,CAAC,IAAI,CAAC,QAAQ,CAAC,CAAC,MAAM,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,GAAG,eAAe,CAAC,OAAO,EAAE;QACnF,GAAG,CAAC,OAAO,CAAC,cAAc,CAAC,CAAC,CAAC,KAAK,CAAC,IAAI,CAAC,QAAQ,CAAC,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE,WAAW,CAAC,CAAC,CAAC,CAAC,EAAc,CAAC,CAAC,CAAC;IACrG,UAAU,GAAG,CAAC,GAAG,KAAK,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,MAAM,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,GAAG,UAAU,CAAC,OAAO,EAAE;QACpE,GAAG,CAAC,OAAO,CAAC,cAAc,CAAC,CAAC,CAAC,KAAK,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE,MAAM,CAAC,CAAC,CAAC,CAAC,EAAc,CAAC,CAAC,CAAC;IAE3F,MAAM,aAAa,GAAG,CAAC,CAAC;IACxB,MAAM,QAAQ,GAAG,CAAC,CAAC;IAEnB,IAAI,aAAa,GAAG,QAAQ;QAC1B,UAAU,GAAG,CAAC,GAAG,IAAI,KAAK,CAAC,aAAa,GAAG,QAAQ,CAAC,CAAC,IAAI,CAAC,OAAO,CAAC,SAAS,CAAC,OAAO,EAAE,CAAC,EAAE,GAAG,UAAU,CAAC,CAAC;;QAEvG,eAAe,GAAG,CAAC,GAAG,IAAI,KAAK,CAAC,QAAQ,GAAG,aAAa,CAAC,CAAC,IAAI,CAAC,OAAO,CAAC,SAAS,CAAC,OAAO,EAAE,CAAC,EAAE,GAAG,eAAe,CAAC,CAAC;IAGnH,IAAI,UAAU,CAAC,MAAM,GAAG,eAAe,CAAC,MAAM;QAC5C,eAAe,CAAC,IAAI,CAAC,GAAG,IAAI,KAAK,CAAC,UAAU,CAAC,MAAM,GAAG,eAAe,CAAC,MAAM,CAAC,CAAC,IAAI,CAAC,OAAO,CAAC,SAAS,CAAC,OAAO,EAAE,CAAC,CAAC,CAAC;;QAEjH,UAAU,CAAC,IAAI,CAAC,GAAG,IAAI,KAAK,CAAC,eAAe,CAAC,MAAM,GAAG,UAAU,CAAC,MAAM,CAAC,CAAC,IAAI,CAAC,OAAO,CAAC,SAAS,CAAC,OAAO,EAAE,CAAC,CAAC,CAAC;IAE9G,OAAO,EAAC,IAAI,EAAE,eAAe,CAAC,IAAI,CAAC,EAAE,CAAC,EAAE,IAAI,EAAE,UAAU,CAAC,IAAI,CAAC,EAAE,CAAC;QAC/D,YAAY,EAAE,eAAe,EAAE,YAAY,EAAE,UAAU,EAAC,CAAC;AAC7D,CAAC"}
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"syncer.d.ts","sourceRoot":"","sources":["syncer.ts"],"names":[],"mappings":"
|
|
1
|
+
{"version":3,"file":"syncer.d.ts","sourceRoot":"","sources":["syncer.ts"],"names":[],"mappings":"AAKA,OAAO,EAAC,OAAO,EAAC,MAAM,UAAU,CAAC;AAEjC,oBAAY,QAAQ;IAAG,KAAK,IAAI;IAAE,OAAO,IAAI;IAAE,IAAI,IAAI;IAAE,KAAK,IAAI;CAAC;AAEnE,qBAAa,aAAa;IAItB,OAAO,CAAC,QAAQ,CAAC,MAAM;IAHzB,OAAO,CAAC,OAAO,CAAoC;gBAGhC,MAAM,EAAE,OAAO;IAGlC,OAAO,CAAC,WAAW,CAAa;IAEzB,IAAI,CAAC,SAAS,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,OAAO,CAAC,IAAI,CAAC,GAAG,IAAI;CAahE"}
|
package/src/utils/syncer.js.map
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"syncer.js","sourceRoot":"","sources":["syncer.ts"],"names":[],"mappings":"
|
|
1
|
+
{"version":3,"file":"syncer.js","sourceRoot":"","sources":["syncer.ts"],"names":[],"mappings":"AAIA,OAAO,EAAC,OAAO,EAAC,MAAM,YAAY,CAAC;AAGnC,MAAM,CAAN,IAAY,QAAuD;AAAnE,WAAY,QAAQ;IAAG,yCAAS,CAAA;IAAE,6CAAW,CAAA;IAAE,uCAAQ,CAAA;IAAE,yCAAS,CAAA;AAAA,CAAC,EAAvD,QAAQ,KAAR,QAAQ,QAA+C;AAEnE,MAAM,OAAO,aAAa;IAGxB,YACmB,MAAe;QAAf,WAAM,GAAN,MAAM,CAAS;QAH1B,YAAO,GAAkB,OAAO,CAAC,OAAO,EAAE,CAAC;QAM3C,gBAAW,GAAW,CAAC,CAAC;IAF7B,CAAC;IAIG,IAAI,CAAC,SAAiB,EAAE,IAAyB;QACtD,MAAM,MAAM,GAAW,EAAE,IAAI,CAAC,WAAW,CAAC;QAC1C,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,GAAG,SAAS,mBAAmB,MAAM,OAAO,CAAC,CAAC;QAChE,IAAI,CAAC,OAAO,GAAG,IAAI,CAAC,OAAO,CAAC,IAAI,CAAC,KAAK,IAAI,EAAE;YAC1C,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,GAAG,SAAS,mBAAmB,MAAM,UAAU,CAAC,CAAC;YACnE,MAAM,IAAI,EAAE,CAAC;YACb,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,GAAG,SAAS,mBAAmB,MAAM,QAAQ,CAAC,CAAC;QACnE,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,GAAQ,EAAE,EAAE;YACpB,MAAM,CAAC,MAAM,EAAE,QAAQ,CAAC,GAAG,OAAO,CAAC,GAAG,CAAC,CAAC;YACxC,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,GAAG,SAAS,mBAAmB,MAAM,aAAa,MAAM,EAAE,EAAE,SAAS,EAAE,QAAQ,CAAC,CAAC;QACrG,CAAC,CAAC,CAAC;QACH,mEAAmE;IACrE,CAAC;CACF"}
|
|
@@ -1,5 +1,5 @@
|
|
|
1
1
|
import * as DG from 'datagrok-api/dg';
|
|
2
|
-
import { BiostructureData
|
|
2
|
+
import { BiostructureData } from '../pdb/types';
|
|
3
3
|
import { IViewer } from './viewer';
|
|
4
4
|
import { PdbResDataFrameType } from '../pdb/pdb-helper';
|
|
5
5
|
export declare enum RepresentationType {
|
|
@@ -26,7 +26,7 @@ export declare enum PluginLayoutControlsDisplayType {
|
|
|
26
26
|
REACTIVE = "reactive"
|
|
27
27
|
}
|
|
28
28
|
export declare const BiostructurePropsDefault: {
|
|
29
|
-
dataJson:
|
|
29
|
+
dataJson: string;
|
|
30
30
|
pdb: string | null;
|
|
31
31
|
pdbTag: string | null;
|
|
32
32
|
biostructureIdColumnName: string | null;
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"molstar-viewer.d.ts","sourceRoot":"","sources":["molstar-viewer.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAItC,OAAO,EAAC,gBAAgB,
|
|
1
|
+
{"version":3,"file":"molstar-viewer.d.ts","sourceRoot":"","sources":["molstar-viewer.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAItC,OAAO,EAAC,gBAAgB,EAAuB,MAAM,cAAc,CAAC;AACpE,OAAO,EAAC,OAAO,EAAC,MAAM,UAAU,CAAC;AACjC,OAAO,EAAC,mBAAmB,EAAC,MAAM,mBAAmB,CAAC;AAGtD,oBAAY,kBAAkB;IAC5B,OAAO,YAAY;IACnB,QAAQ,aAAa;IACrB,YAAY,eAAe;IAC3B,QAAQ,aAAa;IACrB,SAAS,cAAc;IACvB,OAAO,YAAY;CACpB;AAED,oBAAY,sBAAsB;IAChC,IAAI,SAAS;IACb,SAAS,cAAc;IACvB,MAAM,WAAW;CAClB;AAED,oBAAY,4BAA4B;IACtC,IAAI,SAAS;IACb,MAAM,WAAW;CAClB;AAED,oBAAY,+BAA+B;IACzC,OAAO,YAAY;IACnB,QAAQ,aAAa;IACrB,SAAS,cAAc;IACvB,QAAQ,aAAa;CACtB;AAED,eAAO,MAAM,wBAAwB;cAEzB,MAAM;SACX,MAAM,GAAG,IAAI;YACV,MAAM,GAAG,IAAI;8BAEK,MAAM,GAAG,IAAI;IACvC,qBAAqB;8BACK,MAAM,GAAG,IAAI;sBAErB,MAAM,GAAG,IAAI;oBAKf,kBAAkB;sBAGhB,OAAO;wBACL,OAAO;2BACJ,sBAAsB;0BACvB,4BAA4B;4BAC1B,4BAA4B;6BAC3B,4BAA4B;2BAC9B,+BAA+B;wBAElC,OAAO;yBACN,OAAO;iCACC,OAAO;+BAGT,OAAO;kCAMJ,OAAO;mCAEN,OAAO;IAGtC;;;OAGG;wBACiB,OAAO;2BAEJ,OAAO;wBACV,OAAO;mBACZ,OAAO;yBACD,OAAO;uBAET,OAAO;wBACN,OAAO;wBACP,OAAO;0BACL,OAAO;+BAEF,OAAO;2BACX,MAAM;qBACZ,MAAM;sBACL,OAAO;uBAEN,MAAM;wBACL,OAAO;CAC1B,CAAC;AAEJ,MAAM,MAAM,iBAAiB,GAAG,OAAO,wBAAwB,CAAC;AAEhE,MAAM,WAAW,mBAAoB,SAAQ,OAAO;IAClD,IAAI,OAAO,IAAI,gBAAgB,GAAG,IAAI,CAAC;IACvC,UAAU,CAAC,OAAO,EAAE,OAAO,CAAC,iBAAiB,CAAC,GAAG,IAAI,CAAC;CACvD;AAGD,MAAM,WAAW,cAAe,SAAQ,OAAO;IAC7C,OAAO,CAAC,EAAE,EAAE,mBAAmB,GAAG,EAAE,CAAC,SAAS,GAAG,IAAI,CAAC;CACvD;AAED,OAAO,QAAQ,iBAAiB,CAAC;IAC/B,UAAU,mBAAmB;QAE3B,QAAQ,CAAC,UAAU,EAAE,cAAc,EAAE,OAAO,EAAE,OAAO,CAAC,iBAAiB,CAAC,GAAG,OAAO,CAAC,EAAE,CAAC,MAAM,CAAC,iBAAiB,CAAC,GAAG,mBAAmB,CAAC,CAAC;KACxI;CACF;AAED,wBAAsB,gBAAgB,CAAC,OAAO,EAAE,MAAM,EAAE,MAAM,GAAE,MAAc,EAAE,IAAI,CAAC,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC,CAI5G"}
|
|
@@ -31,7 +31,7 @@ export var PluginLayoutControlsDisplayType;
|
|
|
31
31
|
export const BiostructurePropsDefault = new class {
|
|
32
32
|
constructor() {
|
|
33
33
|
// -- Data --
|
|
34
|
-
this.dataJson = BiostructureDataJson.
|
|
34
|
+
this.dataJson = BiostructureDataJson.empty;
|
|
35
35
|
this.pdb = null;
|
|
36
36
|
this.pdbTag = pdbTAGS.PDB;
|
|
37
37
|
this.biostructureIdColumnName = null;
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"molstar-viewer.js","sourceRoot":"","sources":["molstar-viewer.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,IAAI,MAAM,mBAAmB,CAAC;AAG1C,OAAO,EAAmB,oBAAoB,EAAC,MAAM,cAAc,CAAC;AAGpE,OAAO,EAAC,IAAI,IAAI,OAAO,EAAC,MAAM,cAAc,CAAC;AAE7C,MAAM,CAAN,IAAY,kBAOX;AAPD,WAAY,kBAAkB;IAC5B,yCAAmB,CAAA;IACnB,2CAAqB,CAAA;IACrB,iDAA2B,CAAA;IAC3B,2CAAqB,CAAA;IACrB,6CAAuB,CAAA;IACvB,yCAAmB,CAAA;AACrB,CAAC,EAPW,kBAAkB,KAAlB,kBAAkB,QAO7B;AAED,MAAM,CAAN,IAAY,sBAIX;AAJD,WAAY,sBAAsB;IAChC,uCAAa,CAAA;IACb,iDAAuB,CAAA;IACvB,2CAAiB,CAAA;AACnB,CAAC,EAJW,sBAAsB,KAAtB,sBAAsB,QAIjC;AAED,MAAM,CAAN,IAAY,4BAGX;AAHD,WAAY,4BAA4B;IACtC,6CAAa,CAAA;IACb,iDAAiB,CAAA;AACnB,CAAC,EAHW,4BAA4B,KAA5B,4BAA4B,QAGvC;AAED,MAAM,CAAN,IAAY,+BAKX;AALD,WAAY,+BAA+B;IACzC,sDAAmB,CAAA;IACnB,wDAAqB,CAAA;IACrB,0DAAuB,CAAA;IACvB,wDAAqB,CAAA;AACvB,CAAC,EALW,+BAA+B,KAA/B,+BAA+B,QAK1C;AAED,MAAM,CAAC,MAAM,wBAAwB,GAAG,IAAI;IAAA;QAC1C,aAAa;QACb,aAAQ,
|
|
1
|
+
{"version":3,"file":"molstar-viewer.js","sourceRoot":"","sources":["molstar-viewer.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,IAAI,MAAM,mBAAmB,CAAC;AAG1C,OAAO,EAAmB,oBAAoB,EAAC,MAAM,cAAc,CAAC;AAGpE,OAAO,EAAC,IAAI,IAAI,OAAO,EAAC,MAAM,cAAc,CAAC;AAE7C,MAAM,CAAN,IAAY,kBAOX;AAPD,WAAY,kBAAkB;IAC5B,yCAAmB,CAAA;IACnB,2CAAqB,CAAA;IACrB,iDAA2B,CAAA;IAC3B,2CAAqB,CAAA;IACrB,6CAAuB,CAAA;IACvB,yCAAmB,CAAA;AACrB,CAAC,EAPW,kBAAkB,KAAlB,kBAAkB,QAO7B;AAED,MAAM,CAAN,IAAY,sBAIX;AAJD,WAAY,sBAAsB;IAChC,uCAAa,CAAA;IACb,iDAAuB,CAAA;IACvB,2CAAiB,CAAA;AACnB,CAAC,EAJW,sBAAsB,KAAtB,sBAAsB,QAIjC;AAED,MAAM,CAAN,IAAY,4BAGX;AAHD,WAAY,4BAA4B;IACtC,6CAAa,CAAA;IACb,iDAAiB,CAAA;AACnB,CAAC,EAHW,4BAA4B,KAA5B,4BAA4B,QAGvC;AAED,MAAM,CAAN,IAAY,+BAKX;AALD,WAAY,+BAA+B;IACzC,sDAAmB,CAAA;IACnB,wDAAqB,CAAA;IACrB,0DAAuB,CAAA;IACvB,wDAAqB,CAAA;AACvB,CAAC,EALW,+BAA+B,KAA/B,+BAA+B,QAK1C;AAED,MAAM,CAAC,MAAM,wBAAwB,GAAG,IAAI;IAAA;QAC1C,aAAa;QACb,aAAQ,GAAW,oBAAoB,CAAC,KAAK,CAAC;QAC9C,QAAG,GAAkB,IAAI,CAAC;QAC1B,WAAM,GAAkB,OAAO,CAAC,GAAG,CAAC;QAEpC,6BAAwB,GAAkB,IAAI,CAAC;QAC/C,qBAAqB;QACrB,6BAAwB,GAAkB,IAAI,CAAC;QAE/C,qBAAgB,GAAkB,IAAI,CAAC;QACvC,gCAAgC;QAChC,iCAAiC;QAEjC,cAAc;QACd,mBAAc,GAAuB,kBAAkB,CAAC,OAAO,CAAC;QAEhE,eAAe;QACf,qBAAgB,GAAY,KAAK,CAAC;QAClC,uBAAkB,GAAY,KAAK,CAAC;QACpC,0BAAqB,GAA2B,sBAAsB,CAAC,IAAI,CAAC;QAC5E,yBAAoB,GAAiC,4BAA4B,CAAC,IAAI,CAAC;QACvF,2BAAsB,GAAiC,4BAA4B,CAAC,IAAI,CAAC;QACzF,4BAAuB,GAAiC,4BAA4B,CAAC,IAAI,CAAC;QAC1F,0BAAqB,GAAoC,+BAA+B,CAAC,OAAO,CAAC;QAEjG,uBAAkB,GAAY,KAAK,CAAC;QACpC,wBAAmB,GAAY,KAAK,CAAC;QACrC,gCAA2B,GAAY,IAAI,CAAC;QAC5C,kCAAkC;QAClC,sCAAsC;QACtC,8BAAyB,GAAY,IAAI,CAAC;QAE1C,kCAAkC;QAClC,wCAAwC;QACxC,qCAAqC;QACrC,sCAAsC;QACtC,iCAA4B,GAAY,IAAI,CAAC;QAE7C,kCAA6B,GAAY,KAAK,CAAC;QAE/C,6BAA6B;QAC7B;;;WAGG;QACH,uBAAkB,GAAY,KAAK,CAAC;QAEpC,0BAAqB,GAAY,KAAK,CAAC;QACvC,uBAAkB,GAAY,KAAK,CAAC;QACpC,kBAAa,GAAY,KAAK,CAAC;QAC/B,wBAAmB,GAAY,KAAK,CAAC;QAErC,sBAAiB,GAAY,IAAI,CAAC;QAClC,uBAAkB,GAAY,IAAI,CAAC;QACnC,uBAAkB,GAAY,KAAK,CAAC;QACpC,yBAAoB,GAAY,KAAK,CAAC;QAEtC,8BAAyB,GAAY,IAAI,CAAC;QAC1C,0BAAqB,GAAW,wBAAwB,CAAC;QACzD,oBAAe,GAAW,QAAQ,CAAC,CAAC,QAAQ;QAC5C,qBAAgB,GAAY,KAAK,CAAC;QAElC,sBAAiB,GAAW,EAAE,CAAC;QAC/B,uBAAkB,GAAY,KAAK,CAAC;IACtC,CAAC;CAAA,EAAE,CAAC;AAqBJ,MAAM,CAAC,KAAK,UAAU,gBAAgB,CAAC,OAAe,EAAE,SAAiB,KAAK,EAAE,IAAa;IAC3F,MAAM,WAAW,GAAW,oBAAoB,CAAC;IACjD,MAAM,QAAQ,GAAW,kBAAkB,CAAC;IAC5C,MAAM,IAAI,CAAC,SAAS,CAAC,IAAI,CAAC,GAAG,WAAW,IAAI,QAAQ,EAAE,EAAE,EAAC,OAAO,EAAE,MAAM,EAAE,IAAI,EAAC,CAAC,CAAC;AACnF,CAAC"}
|
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@@ -1,7 +1,6 @@
|
|
|
1
1
|
import * as DG from 'datagrok-api/dg';
|
|
2
2
|
import { Observable } from 'rxjs';
|
|
3
3
|
import { IViewer } from './viewer';
|
|
4
|
-
import { BiostructureDataJson } from '../pdb/types';
|
|
5
4
|
export type NodeStyleType = {
|
|
6
5
|
[propName: string]: any;
|
|
7
6
|
};
|
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@@ -17,7 +16,7 @@ export declare enum RepresentationType {
|
|
|
17
16
|
Surface = "surface"
|
|
18
17
|
}
|
|
19
18
|
export declare const NglPropsDefault: {
|
|
20
|
-
dataJson:
|
|
19
|
+
dataJson: string;
|
|
21
20
|
pdb: string | null;
|
|
22
21
|
pdbTag: string | null;
|
|
23
22
|
ligandColumnName: string | null;
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"ngl-gl-viewer.d.ts","sourceRoot":"","sources":["ngl-gl-viewer.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAEtC,OAAO,EAAC,UAAU,EAAC,MAAM,MAAM,CAAC;AAKhC,OAAO,EAAC,OAAO,EAAC,MAAM,UAAU,CAAC;
|
|
1
|
+
{"version":3,"file":"ngl-gl-viewer.d.ts","sourceRoot":"","sources":["ngl-gl-viewer.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAEtC,OAAO,EAAC,UAAU,EAAC,MAAM,MAAM,CAAC;AAKhC,OAAO,EAAC,OAAO,EAAC,MAAM,UAAU,CAAC;AAIjC,MAAM,MAAM,aAAa,GAAG;IAAE,CAAC,QAAQ,EAAE,MAAM,GAAG,GAAG,CAAA;CAAE,CAAC;AACxD,MAAM,MAAM,UAAU,GAAG;IAAE,CAAC,QAAQ,EAAE,MAAM,GAAG,aAAa,CAAA;CAAE,CAAC;AAE/D,oBAAY,kBAAkB;IAC5B,OAAO,YAAY;IACnB,QAAQ,aAAa;IACrB,YAAY,eAAe;IAC3B,QAAQ,aAAa;IACrB,SAAS,cAAc;IACvB,OAAO,YAAY;CACpB;AAED,eAAO,MAAM,eAAe;cAEhB,MAAM;SACX,MAAM,GAAG,IAAI;YACV,MAAM,GAAG,IAAI;sBACH,MAAM,GAAG,IAAI;oBAGf,kBAAkB;6BAIT,OAAO;0BACV,OAAO;4BACL,OAAO;CAC9B,CAAC;AAGJ,MAAM,MAAM,QAAQ,GAAG,OAAO,eAAe,CAAC;AAE9C,MAAM,WAAW,UAAW,SAAQ,OAAO;IACzC,UAAU,CAAC,OAAO,EAAE,OAAO,CAAC,QAAQ,CAAC,GAAG,IAAI,CAAC;IAE7C,IAAI,gBAAgB,IAAI,UAAU,CAAC,IAAI,CAAC,CAAC;CAC1C;AAED,OAAO,QAAQ,iBAAiB,CAAC;IAC/B,UAAU,mBAAmB;QAC3B,QAAQ,CAAC,UAAU,EAAE,KAAK,EAAE,OAAO,EAAE,OAAO,CAAC,QAAQ,CAAC,GAAG,OAAO,CAAC,EAAE,CAAC,MAAM,CAAC,QAAQ,CAAC,GAAG,UAAU,CAAC,CAAC;KACpG;CACF"}
|
|
@@ -12,7 +12,7 @@ export var RepresentationType;
|
|
|
12
12
|
export const NglPropsDefault = new class {
|
|
13
13
|
constructor() {
|
|
14
14
|
// -- Data --
|
|
15
|
-
this.dataJson = BiostructureDataJson.
|
|
15
|
+
this.dataJson = BiostructureDataJson.empty;
|
|
16
16
|
this.pdb = null;
|
|
17
17
|
this.pdbTag = pdbTAGS.PDB;
|
|
18
18
|
this.ligandColumnName = null;
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"ngl-gl-viewer.js","sourceRoot":"","sources":["ngl-gl-viewer.ts"],"names":[],"mappings":"AAQA,OAAO,EAAC,IAAI,IAAI,OAAO,EAAC,MAAM,cAAc,CAAC;AAE7C,OAAO,EAAC,oBAAoB,EAAC,MAAM,cAAc,CAAC;AAMlD,MAAM,CAAN,IAAY,kBAOX;AAPD,WAAY,kBAAkB;IAC5B,yCAAmB,CAAA;IACnB,2CAAqB,CAAA;IACrB,iDAA2B,CAAA;IAC3B,2CAAqB,CAAA;IACrB,6CAAuB,CAAA;IACvB,yCAAmB,CAAA;AACrB,CAAC,EAPW,kBAAkB,KAAlB,kBAAkB,QAO7B;AAED,MAAM,CAAC,MAAM,eAAe,GAAG,IAAI;IAAA;QACjC,aAAa;QACb,aAAQ,
|
|
1
|
+
{"version":3,"file":"ngl-gl-viewer.js","sourceRoot":"","sources":["ngl-gl-viewer.ts"],"names":[],"mappings":"AAQA,OAAO,EAAC,IAAI,IAAI,OAAO,EAAC,MAAM,cAAc,CAAC;AAE7C,OAAO,EAAC,oBAAoB,EAAC,MAAM,cAAc,CAAC;AAMlD,MAAM,CAAN,IAAY,kBAOX;AAPD,WAAY,kBAAkB;IAC5B,yCAAmB,CAAA;IACnB,2CAAqB,CAAA;IACrB,iDAA2B,CAAA;IAC3B,2CAAqB,CAAA;IACrB,6CAAuB,CAAA;IACvB,yCAAmB,CAAA;AACrB,CAAC,EAPW,kBAAkB,KAAlB,kBAAkB,QAO7B;AAED,MAAM,CAAC,MAAM,eAAe,GAAG,IAAI;IAAA;QACjC,aAAa;QACb,aAAQ,GAAW,oBAAoB,CAAC,KAAK,CAAC;QAC9C,QAAG,GAAkB,IAAI,CAAC;QAC1B,WAAM,GAAkB,OAAO,CAAC,GAAG,CAAC;QACpC,qBAAgB,GAAkB,IAAI,CAAC;QAEvC,cAAc;QACd,mBAAc,GAAuB,kBAAkB,CAAC,OAAO,CAAC;QAEhE,kBAAkB;QAElB,4BAAuB,GAAY,KAAK,CAAC;QACzC,yBAAoB,GAAY,IAAI,CAAC;QACrC,2BAAsB,GAAY,IAAI,CAAC;IACzC,CAAC;CAAA,EAAE,CAAC"}
|