@datagrok-libraries/bio 5.39.14 → 5.39.15

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
package/package.json CHANGED
@@ -8,7 +8,7 @@
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  "access": "public"
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  },
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  "friendlyName": "Datagrok bio library",
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- "version": "5.39.14",
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+ "version": "5.39.15",
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  "description": "",
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  "dependencies": {
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  "@datagrok-libraries/gridext": "^1.3.68",
@@ -1,3 +1,4 @@
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+ import { DataProviderFunc } from '../utils/data-provider';
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  export type BiostructureData = {
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  binary: boolean;
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  ext: string;
@@ -7,6 +8,7 @@ export type BiostructureData = {
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  dataLabel?: string;
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  };
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  };
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+ export type BiostructureDataProviderFunc = DataProviderFunc<string, BiostructureData>;
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  /**
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  * Viewer does not support a property of type extending String event completely compatible
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  */
@@ -1 +1 @@
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- {"version":3,"file":"types.d.ts","sourceRoot":"","sources":["types.ts"],"names":[],"mappings":"AAMA,MAAM,MAAM,gBAAgB,GAAG;IAC7B,MAAM,EAAE,OAAO,CAAC;IAChB,GAAG,EAAE,MAAM,CAAC;IACZ,IAAI,EAAE,MAAM,GAAG,UAAU,CAAC;IAC1B,OAAO,CAAC,EAAE;QAAE,IAAI,CAAC,EAAE,MAAM,CAAC;QAAC,SAAS,CAAC,EAAE,MAAM,CAAC;KAAE,CAAC;CAClD,CAAA;AAED;;GAEG;AACH,qBAAa,oBAAqB,SAAQ,MAAM;IAC9C,SAAS,aAAa,KAAK,EAAE,MAAM;IAInC,MAAM,CAAC,IAAI,SAAU;IAErB,MAAM,CAAC,QAAQ,CAAC,GAAG,EAAE,gBAAgB,GAAG,MAAM;IAK9C,MAAM,CAAC,MAAM,CAAC,GAAG,EAAE,MAAM,GAAG,gBAAgB;CAK7C"}
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+ {"version":3,"file":"types.d.ts","sourceRoot":"","sources":["types.ts"],"names":[],"mappings":"AAMA,OAAO,EAAC,gBAAgB,EAAC,MAAM,wBAAwB,CAAC;AAExD,MAAM,MAAM,gBAAgB,GAAG;IAC7B,MAAM,EAAE,OAAO,CAAC;IAChB,GAAG,EAAE,MAAM,CAAC;IACZ,IAAI,EAAE,MAAM,GAAG,UAAU,CAAC;IAC1B,OAAO,CAAC,EAAE;QAAE,IAAI,CAAC,EAAE,MAAM,CAAC;QAAC,SAAS,CAAC,EAAE,MAAM,CAAC;KAAE,CAAC;CAClD,CAAA;AAED,MAAM,MAAM,4BAA4B,GAAG,gBAAgB,CAAC,MAAM,EAAE,gBAAgB,CAAC,CAAC;AAEtF;;GAEG;AACH,qBAAa,oBAAqB,SAAQ,MAAM;IAC9C,SAAS,aAAa,KAAK,EAAE,MAAM;IAInC,MAAM,CAAC,IAAI,SAAU;IAErB,MAAM,CAAC,QAAQ,CAAC,GAAG,EAAE,gBAAgB,GAAG,MAAM;IAK9C,MAAM,CAAC,MAAM,CAAC,GAAG,EAAE,MAAM,GAAG,gBAAgB;CAK7C"}
@@ -1 +1 @@
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- {"version":3,"file":"types.js","sourceRoot":"","sources":["types.ts"],"names":[],"mappings":"AAIA,OAAO,EAAC,MAAM,EAAC,MAAM,WAAW,CAAC;AASjC;;GAEG;AACH,MAAM,OAAO,oBAAqB,SAAQ,MAAM;IAC9C,YAAsB,KAAa;QACjC,KAAK,CAAC,KAAK,CAAC,CAAC;IACf,CAAC;IAID,MAAM,CAAC,QAAQ,CAAC,GAAqB;QACnC,MAAM,OAAO,GAAG,GAAG,CAAC,MAAM,CAAC,CAAC,CAAC,MAAM,CAAC,cAAc,CAAC,GAAG,CAAC,IAAkB,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,IAAc,CAAC;QAChG,OAAO,IAAI,CAAC,SAAS,CAAC,EAAC,IAAI,EAAE,OAAO,EAAE,GAAG,EAAE,GAAG,CAAC,GAAG,EAAE,MAAM,EAAE,GAAG,CAAC,MAAM,EAAE,OAAO,EAAE,GAAG,CAAC,OAAO,EAAC,CAAC,CAAC;IACjG,CAAC;IAED,MAAM,CAAC,MAAM,CAAC,GAAW;QACvB,MAAM,IAAI,GAAG,IAAI,CAAC,KAAK,CAAC,GAAwB,CAAC,CAAC;QAClD,IAAI,IAAI;YAAE,IAAI,CAAC,IAAI,GAAG,IAAI,CAAC,MAAM,CAAC,CAAC,CAAC,MAAM,CAAC,YAAY,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC;QAC/E,OAAO,IAAI,CAAC;IACd,CAAC;;AAXM,yBAAI,GAAG,MAAM,CAAC"}
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+ {"version":3,"file":"types.js","sourceRoot":"","sources":["types.ts"],"names":[],"mappings":"AAIA,OAAO,EAAC,MAAM,EAAC,MAAM,WAAW,CAAC;AAajC;;GAEG;AACH,MAAM,OAAO,oBAAqB,SAAQ,MAAM;IAC9C,YAAsB,KAAa;QACjC,KAAK,CAAC,KAAK,CAAC,CAAC;IACf,CAAC;IAID,MAAM,CAAC,QAAQ,CAAC,GAAqB;QACnC,MAAM,OAAO,GAAG,GAAG,CAAC,MAAM,CAAC,CAAC,CAAC,MAAM,CAAC,cAAc,CAAC,GAAG,CAAC,IAAkB,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,IAAc,CAAC;QAChG,OAAO,IAAI,CAAC,SAAS,CAAC,EAAC,IAAI,EAAE,OAAO,EAAE,GAAG,EAAE,GAAG,CAAC,GAAG,EAAE,MAAM,EAAE,GAAG,CAAC,MAAM,EAAE,OAAO,EAAE,GAAG,CAAC,OAAO,EAAC,CAAC,CAAC;IACjG,CAAC;IAED,MAAM,CAAC,MAAM,CAAC,GAAW;QACvB,MAAM,IAAI,GAAG,IAAI,CAAC,KAAK,CAAC,GAAwB,CAAC,CAAC;QAClD,IAAI,IAAI;YAAE,IAAI,CAAC,IAAI,GAAG,IAAI,CAAC,MAAM,CAAC,CAAC,CAAC,MAAM,CAAC,YAAY,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC;QAC/E,OAAO,IAAI,CAAC;IACd,CAAC;;AAXM,yBAAI,GAAG,MAAM,CAAC"}
@@ -1,7 +1,7 @@
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  import { Observable } from 'rxjs';
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  export interface IRenderer {
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  get onRendered(): Observable<void>;
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- invalidate(): void;
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+ invalidate(caller?: string): void;
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  /** @param timeout Default 5000 ms */
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  awaitRendered(timeout?: number): Promise<void>;
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  }
@@ -1 +1 @@
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- {"version":3,"file":"renderer.d.ts","sourceRoot":"","sources":["renderer.ts"],"names":[],"mappings":"AAIA,OAAO,EAAC,UAAU,EAAC,MAAM,MAAM,CAAC;AAEhC,MAAM,WAAW,SAAS;IACxB,IAAI,UAAU,IAAI,UAAU,CAAC,IAAI,CAAC,CAAC;IAEnC,UAAU,IAAI,IAAI,CAAC;IAEnB,sCAAsC;IACtC,aAAa,CAAC,OAAO,CAAC,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC,CAAC;CAChD"}
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+ {"version":3,"file":"renderer.d.ts","sourceRoot":"","sources":["renderer.ts"],"names":[],"mappings":"AAIA,OAAO,EAAC,UAAU,EAAC,MAAM,MAAM,CAAC;AAEhC,MAAM,WAAW,SAAS;IACxB,IAAI,UAAU,IAAI,UAAU,CAAC,IAAI,CAAC,CAAC;IAEnC,UAAU,CAAC,MAAM,CAAC,EAAE,MAAM,GAAG,IAAI,CAAC;IAElC,sCAAsC;IACtC,aAAa,CAAC,OAAO,CAAC,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC,CAAC;CAChD"}
@@ -0,0 +1,4 @@
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+ import * as DG from 'datagrok-api/dg';
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+ export type DataProviderFunc<TId, TValue> = (id: TId) => Promise<TValue>;
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+ export declare function getDataProviderList(semType: string): Promise<DG.Func[]>;
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+ //# sourceMappingURL=data-provider.d.ts.map
@@ -0,0 +1 @@
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+ {"version":3,"file":"data-provider.d.ts","sourceRoot":"","sources":["data-provider.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAEtC,MAAM,MAAM,gBAAgB,CAAC,GAAG,EAAE,MAAM,IAAI,CAAC,EAAE,EAAE,GAAG,KAAK,OAAO,CAAC,MAAM,CAAC,CAAC;AAEzE,wBAAsB,mBAAmB,CAAC,OAAO,EAAE,MAAM,GAAG,OAAO,CAAC,EAAE,CAAC,IAAI,EAAE,CAAC,CAK7E"}
@@ -0,0 +1,8 @@
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+ import * as grok from 'datagrok-api/grok';
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+ export async function getDataProviderList(semType) {
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+ return grok.dapi.functions
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+ .include('params,entityTags')
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+ .filter(`options.dataProvider="${semType}"`)
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+ .list();
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+ }
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+ //# sourceMappingURL=data-provider.js.map
@@ -0,0 +1 @@
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+ {"version":3,"file":"data-provider.js","sourceRoot":"","sources":["data-provider.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,IAAI,MAAM,mBAAmB,CAAC;AAK1C,MAAM,CAAC,KAAK,UAAU,mBAAmB,CAAC,OAAe;IACvD,OAAO,IAAI,CAAC,IAAI,CAAC,SAAS;SACvB,OAAO,CAAC,mBAAmB,CAAC;SAC5B,MAAM,CAAC,yBAAyB,OAAO,GAAG,CAAC;SAC3C,IAAI,EAAE,CAAC;AACZ,CAAC"}
@@ -1,4 +1,4 @@
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- import { ILogger } from './syncer';
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+ import { ILogger } from './logger';
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  export type DockerContainerStatus = 'stopped' | 'started' | 'pending change' | 'changing' | 'error' | 'checking';
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  export declare function awaitStatus(dcId: string, targetStatus: DockerContainerStatus, timeout: number | undefined, logger: ILogger): Promise<void>;
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  //# sourceMappingURL=docker.d.ts.map
@@ -0,0 +1,7 @@
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+ export interface ILogger {
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+ error(message: any, params?: object | undefined, stackTrace?: string | undefined): void;
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+ warning(message: string, params?: object | undefined): void;
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+ info(message: string, params?: object | undefined): void;
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+ debug(message: string, params?: object | undefined): void;
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+ }
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+ //# sourceMappingURL=logger.d.ts.map
@@ -0,0 +1 @@
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+ {"version":3,"file":"logger.d.ts","sourceRoot":"","sources":["logger.ts"],"names":[],"mappings":"AAIA,MAAM,WAAW,OAAO;IACtB,KAAK,CAAC,OAAO,EAAE,GAAG,EAAE,MAAM,CAAC,EAAE,MAAM,GAAG,SAAS,EAAE,UAAU,CAAC,EAAE,MAAM,GAAG,SAAS,GAAG,IAAI,CAAC;IACxF,OAAO,CAAC,OAAO,EAAE,MAAM,EAAE,MAAM,CAAC,EAAE,MAAM,GAAG,SAAS,GAAG,IAAI,CAAC;IAC5D,IAAI,CAAC,OAAO,EAAE,MAAM,EAAE,MAAM,CAAC,EAAE,MAAM,GAAG,SAAS,GAAG,IAAI,CAAC;IACzD,KAAK,CAAC,OAAO,EAAE,MAAM,EAAE,MAAM,CAAC,EAAE,MAAM,GAAG,SAAS,GAAG,IAAI,CAAC;CAC3D"}
@@ -0,0 +1,2 @@
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+ export {};
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+ //# sourceMappingURL=logger.js.map
@@ -0,0 +1 @@
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+ {"version":3,"file":"logger.js","sourceRoot":"","sources":["logger.ts"],"names":[],"mappings":""}
@@ -1,15 +1,10 @@
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+ import { ILogger } from './logger';
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  export declare enum LogLevel {
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  error = 0,
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  warning = 1,
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  info = 2,
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  debug = 3
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  }
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- export interface ILogger {
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- error(message: any, params?: object | undefined, stackTrace?: string | undefined): void;
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- warning(message: string, params?: object | undefined): void;
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- info(message: string, params?: object | undefined): void;
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- debug(message: string, params?: object | undefined): void;
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- }
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  export declare class PromiseSyncer {
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  private readonly logger;
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  private promise;
@@ -1 +1 @@
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- {"version":3,"file":"syncer.d.ts","sourceRoot":"","sources":["syncer.ts"],"names":[],"mappings":"AAQA,oBAAY,QAAQ;IAAG,KAAK,IAAI;IAAE,OAAO,IAAI;IAAE,IAAI,IAAI;IAAE,KAAK,IAAI;CAAC;AAEnE,MAAM,WAAW,OAAO;IACtB,KAAK,CAAC,OAAO,EAAE,GAAG,EAAE,MAAM,CAAC,EAAE,MAAM,GAAG,SAAS,EAAE,UAAU,CAAC,EAAE,MAAM,GAAG,SAAS,GAAG,IAAI,CAAC;IACxF,OAAO,CAAC,OAAO,EAAE,MAAM,EAAE,MAAM,CAAC,EAAE,MAAM,GAAG,SAAS,GAAG,IAAI,CAAC;IAC5D,IAAI,CAAC,OAAO,EAAE,MAAM,EAAE,MAAM,CAAC,EAAE,MAAM,GAAG,SAAS,GAAG,IAAI,CAAC;IACzD,KAAK,CAAC,OAAO,EAAE,MAAM,EAAE,MAAM,CAAC,EAAE,MAAM,GAAG,SAAS,GAAG,IAAI,CAAC;CAC3D;AAED,qBAAa,aAAa;IAItB,OAAO,CAAC,QAAQ,CAAC,MAAM;IAHzB,OAAO,CAAC,OAAO,CAAoC;gBAGhC,MAAM,EAAE,OAAO;IAGlC,OAAO,CAAC,WAAW,CAAa;IAEzB,IAAI,CAAC,SAAS,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,OAAO,CAAC,IAAI,CAAC,GAAG,IAAI;CAahE"}
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+ {"version":3,"file":"syncer.d.ts","sourceRoot":"","sources":["syncer.ts"],"names":[],"mappings":"AAOA,OAAO,EAAC,OAAO,EAAC,MAAM,UAAU,CAAC;AAEjC,oBAAY,QAAQ;IAAG,KAAK,IAAI;IAAE,OAAO,IAAI;IAAE,IAAI,IAAI;IAAE,KAAK,IAAI;CAAC;AAEnE,qBAAa,aAAa;IAItB,OAAO,CAAC,QAAQ,CAAC,MAAM;IAHzB,OAAO,CAAC,OAAO,CAAoC;gBAGhC,MAAM,EAAE,OAAO;IAGlC,OAAO,CAAC,WAAW,CAAa;IAEzB,IAAI,CAAC,SAAS,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,OAAO,CAAC,IAAI,CAAC,GAAG,IAAI;CAahE"}
@@ -1 +1 @@
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- {"version":3,"file":"syncer.js","sourceRoot":"","sources":["syncer.ts"],"names":[],"mappings":"AAMA,OAAO,EAAC,OAAO,EAAC,MAAM,YAAY,CAAC;AAEnC,MAAM,CAAN,IAAY,QAAuD;AAAnE,WAAY,QAAQ;IAAG,yCAAS,CAAA;IAAE,6CAAW,CAAA;IAAE,uCAAQ,CAAA;IAAE,yCAAS,CAAA;AAAA,CAAC,EAAvD,QAAQ,KAAR,QAAQ,QAA+C;AASnE,MAAM,OAAO,aAAa;IAGxB,YACmB,MAAe;QAAf,WAAM,GAAN,MAAM,CAAS;QAH1B,YAAO,GAAkB,OAAO,CAAC,OAAO,EAAE,CAAC;QAM3C,gBAAW,GAAW,CAAC,CAAC;IAF7B,CAAC;IAIG,IAAI,CAAC,SAAiB,EAAE,IAAyB;QACtD,MAAM,MAAM,GAAW,EAAE,IAAI,CAAC,WAAW,CAAC;QAC1C,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,GAAG,SAAS,mBAAmB,MAAM,OAAO,CAAC,CAAC;QAChE,IAAI,CAAC,OAAO,GAAG,IAAI,CAAC,OAAO,CAAC,IAAI,CAAC,KAAK,IAAI,EAAE;YAC1C,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,GAAG,SAAS,mBAAmB,MAAM,UAAU,CAAC,CAAC;YACnE,MAAM,IAAI,EAAE,CAAC;YACb,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,GAAG,SAAS,mBAAmB,MAAM,QAAQ,CAAC,CAAC;QACnE,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,GAAQ,EAAE,EAAE;YACpB,MAAM,CAAC,MAAM,EAAE,QAAQ,CAAC,GAAG,OAAO,CAAC,GAAG,CAAC,CAAC;YACxC,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,GAAG,SAAS,mBAAmB,MAAM,aAAa,MAAM,EAAE,EAAE,SAAS,EAAE,QAAQ,CAAC,CAAC;QACrG,CAAC,CAAC,CAAC;QACH,mEAAmE;IACrE,CAAC;CACF"}
1
+ {"version":3,"file":"syncer.js","sourceRoot":"","sources":["syncer.ts"],"names":[],"mappings":"AAMA,OAAO,EAAC,OAAO,EAAC,MAAM,YAAY,CAAC;AAGnC,MAAM,CAAN,IAAY,QAAuD;AAAnE,WAAY,QAAQ;IAAG,yCAAS,CAAA;IAAE,6CAAW,CAAA;IAAE,uCAAQ,CAAA;IAAE,yCAAS,CAAA;AAAA,CAAC,EAAvD,QAAQ,KAAR,QAAQ,QAA+C;AAEnE,MAAM,OAAO,aAAa;IAGxB,YACmB,MAAe;QAAf,WAAM,GAAN,MAAM,CAAS;QAH1B,YAAO,GAAkB,OAAO,CAAC,OAAO,EAAE,CAAC;QAM3C,gBAAW,GAAW,CAAC,CAAC;IAF7B,CAAC;IAIG,IAAI,CAAC,SAAiB,EAAE,IAAyB;QACtD,MAAM,MAAM,GAAW,EAAE,IAAI,CAAC,WAAW,CAAC;QAC1C,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,GAAG,SAAS,mBAAmB,MAAM,OAAO,CAAC,CAAC;QAChE,IAAI,CAAC,OAAO,GAAG,IAAI,CAAC,OAAO,CAAC,IAAI,CAAC,KAAK,IAAI,EAAE;YAC1C,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,GAAG,SAAS,mBAAmB,MAAM,UAAU,CAAC,CAAC;YACnE,MAAM,IAAI,EAAE,CAAC;YACb,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,GAAG,SAAS,mBAAmB,MAAM,QAAQ,CAAC,CAAC;QACnE,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,GAAQ,EAAE,EAAE;YACpB,MAAM,CAAC,MAAM,EAAE,QAAQ,CAAC,GAAG,OAAO,CAAC,GAAG,CAAC,CAAC;YACxC,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,GAAG,SAAS,mBAAmB,MAAM,aAAa,MAAM,EAAE,EAAE,SAAS,EAAE,QAAQ,CAAC,CAAC;QACrG,CAAC,CAAC,CAAC;QACH,mEAAmE;IACrE,CAAC;CACF"}
@@ -1,5 +1,5 @@
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  import * as DG from 'datagrok-api/dg';
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- import { BiostructureDataJson } from '../pdb/types';
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+ import { BiostructureData, BiostructureDataJson } from '../pdb/types';
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  import { IViewer } from './viewer';
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  import { PdbResDataFrameType } from '../pdb/pdb-helper';
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  export declare enum RepresentationType {
@@ -29,9 +29,10 @@ export declare const BiostructurePropsDefault: {
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  dataJson: BiostructureDataJson;
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  pdb: string | null;
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  pdbTag: string | null;
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+ biostructureIdColumnName: string | null;
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+ /** DG.Func nqName */
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+ biostructureDataProvider: string | null;
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  ligandColumnName: string | null;
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- pdbProvider: string;
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- emdbProvider: string;
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  representation: RepresentationType;
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  layoutIsExpanded: boolean;
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  layoutShowControls: boolean;
@@ -68,6 +69,7 @@ export declare const BiostructurePropsDefault: {
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  };
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  export type BiostructureProps = typeof BiostructurePropsDefault;
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  export interface IBiostructureViewer extends IViewer {
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+ get dataEff(): BiostructureData | null;
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  setOptions(options: Partial<BiostructureProps>): void;
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  }
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  export interface ISaguaroViewer extends IViewer {
@@ -1 +1 @@
1
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@@ -34,9 +34,12 @@ export const BiostructurePropsDefault = new class {
34
34
  this.dataJson = BiostructureDataJson.null;
35
35
  this.pdb = null;
36
36
  this.pdbTag = pdbTAGS.PDB;
37
+ this.biostructureIdColumnName = null;
38
+ /** DG.Func nqName */
39
+ this.biostructureDataProvider = null;
37
40
  this.ligandColumnName = null;
38
- this.pdbProvider = 'rcsb';
39
- this.emdbProvider = 'rcsb';
41
+ // pdbProvider: string = 'rcsb';
42
+ // emdbProvider: string = 'rcsb';
40
43
  // -- Style --
41
44
  this.representation = RepresentationType.Cartoon;
42
45
  // -- Layout --
@@ -1 +1 @@
1
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