@datagrok-libraries/bio 5.38.1 → 5.38.2
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/CHANGELOG.md +7 -0
- package/package.json +1 -1
- package/src/utils/cell-renderer-monomer-placer.d.ts.map +1 -1
- package/src/utils/cell-renderer-monomer-placer.js +2 -0
- package/src/utils/cell-renderer-monomer-placer.js.map +1 -1
- package/src/utils/macromolecule/utils.js +1 -1
- package/src/utils/macromolecule/utils.js.map +1 -1
package/CHANGELOG.md
CHANGED
package/package.json
CHANGED
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@@ -1 +1 @@
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1
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-
{"version":3,"file":"cell-renderer-monomer-placer.d.ts","sourceRoot":"","sources":["cell-renderer-monomer-placer.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAKtC,OAAO,EAAC,YAAY,EAAC,MAAM,iBAAiB,CAAC;AAC7C,OAAO,EAAe,kBAAkB,EAAiC,MAAM,iBAAiB,CAAC;AACjG,OAAO,EAAC,WAAW,EAAE,OAAO,EAAC,MAAM,UAAU,CAAC;AAG9C,KAAK,kBAAkB,GAAG;IACxB,YAAY,EAAE,YAAY,CAAC;IAC3B,UAAU,CAAC,EAAE,WAAW,CAAC;IACzB,gBAAgB,EAAE,MAAM,CAAC;IAAC,cAAc,EAAE,MAAM,CAAC;IACjD,cAAc,EAAE,kBAAkB,CAAC;IAAC,kBAAkB,EAAE,MAAM,CAAC;CAChE,CAAC;AASF,qBAAa,aAAa;aAkBN,IAAI,EAAE,EAAE,CAAC,IAAI,GAAG,IAAI;aACpB,GAAG,EAAE,EAAE,CAAC,MAAM,CAAC,MAAM,CAAC;IACtC,OAAO,CAAC,QAAQ,CAAC,aAAa;IAnBhC,OAAO,CAAC,QAAQ,CAAC,SAAS,CAAe;IACzC,OAAO,CAAC,kBAAkB,CAA2B;IAGrD,OAAO,CAAC,cAAc,CAAK;IAC3B,OAAO,CAAC,KAAK,CAAqB;IAClC,OAAO,CAAC,cAAc,CAAY;IAElC,OAAO,CAAC,QAAQ,CAAkB;IAClC,IAAW,OAAO,IAAI,OAAO,CAA0B;IAEhD,iBAAiB,EAAE;QAAE,CAAC,GAAG,EAAE,MAAM,GAAG,WAAW,CAAA;KAAE,CAAM;IACvD,oBAAoB,EAAE;QAAE,CAAC,GAAG,EAAE,MAAM,GAAG,cAAc,CAAA;KAAE,CAAM;IACpE,OAAO,CAAC,QAAQ,CAAC,IAAI,CAAwB;IAE7C,sEAAsE;gBAEpD,IAAI,EAAE,EAAE,CAAC,IAAI,GAAG,IAAI,EACpB,GAAG,EAAE,EAAE,CAAC,MAAM,CAAC,MAAM,CAAC,EACrB,aAAa,EAAE,MAAM,kBAAkB;IAkB1D,OAAO,CAAC,OAAO;IAIf,qGAAqG;IAC9F,qBAAqB,CAAC,MAAM,EAAE,MAAM,GAAG,CAAC,MAAM,EAAE,EAAE,MAAM,EAAE,CAAC;IAWlE,OAAO,CAAC,2BAA2B;IAsBnC,OAAO,CAAC,8BAA8B;IA0BtC,yCAAyC;IAClC,WAAW,CAAC,MAAM,EAAE,MAAM,EAAE,CAAC,EAAE,MAAM,GAAG,MAAM,GAAG,IAAI;
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1
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{"version":3,"file":"cell-renderer-monomer-placer.d.ts","sourceRoot":"","sources":["cell-renderer-monomer-placer.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAKtC,OAAO,EAAC,YAAY,EAAC,MAAM,iBAAiB,CAAC;AAC7C,OAAO,EAAe,kBAAkB,EAAiC,MAAM,iBAAiB,CAAC;AACjG,OAAO,EAAC,WAAW,EAAE,OAAO,EAAC,MAAM,UAAU,CAAC;AAG9C,KAAK,kBAAkB,GAAG;IACxB,YAAY,EAAE,YAAY,CAAC;IAC3B,UAAU,CAAC,EAAE,WAAW,CAAC;IACzB,gBAAgB,EAAE,MAAM,CAAC;IAAC,cAAc,EAAE,MAAM,CAAC;IACjD,cAAc,EAAE,kBAAkB,CAAC;IAAC,kBAAkB,EAAE,MAAM,CAAC;CAChE,CAAC;AASF,qBAAa,aAAa;aAkBN,IAAI,EAAE,EAAE,CAAC,IAAI,GAAG,IAAI;aACpB,GAAG,EAAE,EAAE,CAAC,MAAM,CAAC,MAAM,CAAC;IACtC,OAAO,CAAC,QAAQ,CAAC,aAAa;IAnBhC,OAAO,CAAC,QAAQ,CAAC,SAAS,CAAe;IACzC,OAAO,CAAC,kBAAkB,CAA2B;IAGrD,OAAO,CAAC,cAAc,CAAK;IAC3B,OAAO,CAAC,KAAK,CAAqB;IAClC,OAAO,CAAC,cAAc,CAAY;IAElC,OAAO,CAAC,QAAQ,CAAkB;IAClC,IAAW,OAAO,IAAI,OAAO,CAA0B;IAEhD,iBAAiB,EAAE;QAAE,CAAC,GAAG,EAAE,MAAM,GAAG,WAAW,CAAA;KAAE,CAAM;IACvD,oBAAoB,EAAE;QAAE,CAAC,GAAG,EAAE,MAAM,GAAG,cAAc,CAAA;KAAE,CAAM;IACpE,OAAO,CAAC,QAAQ,CAAC,IAAI,CAAwB;IAE7C,sEAAsE;gBAEpD,IAAI,EAAE,EAAE,CAAC,IAAI,GAAG,IAAI,EACpB,GAAG,EAAE,EAAE,CAAC,MAAM,CAAC,MAAM,CAAC,EACrB,aAAa,EAAE,MAAM,kBAAkB;IAkB1D,OAAO,CAAC,OAAO;IAIf,qGAAqG;IAC9F,qBAAqB,CAAC,MAAM,EAAE,MAAM,GAAG,CAAC,MAAM,EAAE,EAAE,MAAM,EAAE,CAAC;IAWlE,OAAO,CAAC,2BAA2B;IAsBnC,OAAO,CAAC,8BAA8B;IA0BtC,yCAAyC;IAClC,WAAW,CAAC,MAAM,EAAE,MAAM,EAAE,CAAC,EAAE,MAAM,GAAG,MAAM,GAAG,IAAI;IAkC5D,aAAa,CAAC,MAAM,EAAE,MAAM,GAAG,MAAM,EAAE;IAKhC,UAAU,CAAC,MAAM,EAAE,MAAM,GAAG,OAAO,GAAG,IAAI;IAM1C,qBAAqB,CAAC,KAAK,EAAE,MAAM,GAAG,IAAI;IAK1C,iBAAiB,CAAC,KAAK,EAAE,MAAM,GAAG,IAAI;IAKtC,KAAK,IAAI,OAAO;CAGxB"}
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@@ -101,6 +101,8 @@ export class MonomerPlacer {
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const [monomerMaxLengthList, monomerMaxLengthSumList] = this.getCellMonomerLengths(rowIdx);
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const seq = this.col.get(rowIdx);
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const seqMonList = wu(this._splitter(seq)).toArray();
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if (seqMonList.length === 0)
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105
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return null;
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let iterationCount = 100;
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let left = null;
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let right = seqMonList.length;
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@@ -1 +1 @@
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1
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-
{"version":3,"file":"cell-renderer-monomer-placer.js","sourceRoot":"","sources":["cell-renderer-monomer-placer.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,IAAI,MAAM,mBAAmB,CAAC;AAC1C,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAGtC,OAAO,EAAE,MAAM,IAAI,CAAC;AAGpB,OAAO,EAAmC,oBAAoB,EAAW,MAAM,iBAAiB,CAAC;AAWjG,MAAM,cAAc,GAAG;IACrB,0BAAc,mCAAuB;IACrC,0BAAc,mCAAuB;IACrC,wBAAa,2CAA2B;IACxC,wBAAa,2CAA2B;CACzC,CAAC;AAEF,MAAM,OAAO,aAAa;IAUxB,IAAW,OAAO,KAAc,OAAO,IAAI,CAAC,QAAQ,CAAC,CAAC,CAAC;IAMvD,sEAAsE;IACtE,YACkB,IAAoB,EACpB,GAAsB,EACrB,aAAuC;QAFxC,SAAI,GAAJ,IAAI,CAAgB;QACpB,QAAG,GAAH,GAAG,CAAmB;QACrB,kBAAa,GAAb,aAAa,CAA0B;QAlBlD,uBAAkB,GAAsB,IAAI,CAAC;QAErD,4BAA4B;QACpB,mBAAc,GAAG,CAAC,CAAC;QAInB,aAAQ,GAAY,KAAK,CAAC;QAG3B,sBAAiB,GAAmC,EAAE,CAAC,CAAC,mDAAmD;QAC3G,yBAAoB,GAAsC,EAAE,CAAC,CAAC,2CAA2C;QAC/F,SAAI,GAAqB,EAAE,CAAC;QAQ3C,IAAI,CAAC,SAAS,GAAG,oBAAoB,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;QAChD,IAAI,CAAC,KAAK,GAAG,IAAI,CAAC,aAAa,EAAE,CAAC;QAClC,IAAI,CAAC,cAAc,GAAG,EAAE,CAAC,MAAM,CAAC,MAAM,CAAC,IAAI,CAAC,GAAG,CAAC,MAAM,CAAC,CAAC;QACxD,IAAI,IAAI,CAAC,IAAI,EAAE;YACb,oDAAoD;YACpD,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,GAAG,CAAC,SAAS,CAAC,aAAa,CAAC,SAAS,CAAC,GAAG,EAAE;gBACxD,IAAI,CAAC,KAAK,GAAG,IAAI,CAAC,aAAa,EAAE,CAAC;gBAClC,IAAI,CAAC,kBAAkB,GAAG,IAAI,CAAC;gBAC/B,IAAI,CAAC,cAAc,GAAG,EAAE,CAAC,MAAM,CAAC,MAAM,CAAC,IAAI,CAAC,GAAG,CAAC,MAAM,CAAC,CAAC;YAC1D,CAAC,CAAC,CAAC,CAAC;YACJ,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,MAAM,CAAC,aAAa,CAAC,SAAS,CAAC,CAAC,IAAa,EAAE,EAAE;gBACnE,IAAI,IAAI,CAAC,IAAI,EAAE,IAAI,EAAE,EAAE,KAAK,IAAI,CAAC,EAAE;oBAAE,IAAI,CAAC,OAAO,EAAE,CAAC;YACtD,CAAC,CAAC,CAAC,CAAC;SACL;IACH,CAAC;IAEO,OAAO;QACb,KAAK,MAAM,GAAG,IAAI,IAAI,CAAC,IAAI;YAAE,GAAG,CAAC,WAAW,EAAE,CAAC;IACjD,CAAC;IAED,qGAAqG;IAC9F,qBAAqB,CAAC,MAAc;QACzC,MAAM,GAAG,GAAa,IAAI,CAAC,KAAK,CAAC,YAAY,CAAC,KAAK,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,8BAA8B,EAAE,CAAC,CAAC;YAC7F,IAAI,CAAC,2BAA2B,CAAC,MAAM,CAAC,CAAC;QAE3C,MAAM,MAAM,GAAa,IAAI,KAAK,CAAS,GAAG,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC;QAC3D,MAAM,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,UAAU;QACzB,KAAK,IAAI,GAAG,GAAW,CAAC,EAAE,GAAG,GAAG,MAAM,CAAC,MAAM,EAAE,GAAG,EAAE;YAClD,MAAM,CAAC,GAAG,CAAC,GAAG,MAAM,CAAC,GAAG,GAAG,CAAC,CAAC,GAAG,GAAG,CAAC,GAAG,GAAG,CAAC,CAAC,CAAC;QAC/C,OAAO,CAAC,GAAG,EAAE,MAAM,CAAC,CAAC;IACvB,CAAC;IAEO,2BAA2B,CAAC,MAAc;QAChD,IAAI,IAAI,CAAC,kBAAkB,KAAK,IAAI,EAAE;YACpC,IAAI,CAAC,kBAAkB,GAAG,IAAI,KAAK,CAAC,IAAI,CAAC,GAAG,CAAC,MAAM,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;YAChE,IAAI,CAAC,QAAQ,GAAG,IAAI,CAAC;SACtB;QAED,IAAI,GAAG,GAAa,IAAI,CAAC,kBAAkB,CAAC,MAAM,CAAC,CAAC;QACpD,IAAI,GAAG,KAAK,IAAI,EAAE;YAChB,MAAM,UAAU,GAAa,IAAI,CAAC,aAAa,CAAC,MAAM,CAAC,CAAC;YACxD,GAAG,GAAG,IAAI,CAAC,kBAAkB,CAAC,MAAM,CAAC,GAAG,IAAI,KAAK,CAAS,UAAU,CAAC,MAAM,CAAC,CAAC;YAE7E,KAAK,MAAM,CAAC,WAAW,EAAE,OAAO,CAAC,IAAI,EAAE,CAAC,SAAS,CAAC,UAAU,CAAC,EAAE;gBAC7D,MAAM,QAAQ,GAAW,IAAI,CAAC,KAAK,CAAC,cAAc,CAAC,WAAW,EAAE,IAAI,CAAC,KAAK,CAAC,kBAAkB,CAAC,CAAC;gBAC/F,MAAM,cAAc,GAAG,IAAI,CAAC,KAAK,CAAC,YAAY,CAAC,WAAW,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,cAAc,CAAC,CAAC,CAAC,IAAI,CAAC,KAAK,CAAC,cAAc,CAAC;gBAC/G,MAAM,WAAW,GAAW,cAAc,GAAG,QAAQ,CAAC,MAAM,GAAG,IAAI,CAAC,KAAK,CAAC,gBAAgB,CAAC;gBAC3F,GAAG,CAAC,OAAO,CAAC,GAAG,WAAW,CAAC;aAC5B;YACD,IAAI,CAAC,QAAQ,GAAG,IAAI,CAAC;SACtB;QACD,OAAO,GAAG,CAAC;IACb,CAAC;IAEO,8BAA8B;;QACpC,IAAI,IAAI,CAAC,kBAAkB,KAAK,IAAI,EAAE;YACpC,IAAI,CAAC,kBAAkB,GAAG,IAAI,KAAK,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;YAClD,IAAI,CAAC,QAAQ,GAAG,IAAI,CAAC;SACtB;QACD,MAAA,IAAI,CAAC,kBAAkB,EAAC,CAAC,SAAD,CAAC,IAAM,IAAI,KAAK,CAAC,CAAC,CAAC,EAAC;QAC5C,MAAM,GAAG,GAAG,IAAI,CAAC,kBAAkB,CAAC,CAAC,CAAC,CAAC;QACvC,MAAM,QAAQ,GAAG,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,IAAI,CAAC,IAAI,EAAE,UAAU,CAAC,GAAG,IAAI,CAAC,CAAC,GAAG,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC;QAChF,MAAM,MAAM,GAAG,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC,IAAI,CAAC,IAAI,EAAE,UAAU,CAAC,GAAG,IAAI,CAAC,CAAC,GAAG,EAAE,CAAC,EAAE,IAAI,CAAC,GAAG,CAAC,MAAM,CAAC,CAAC;QAC3F,KAAK,IAAI,MAAM,GAAG,QAAQ,EAAE,MAAM,GAAG,MAAM,EAAE,MAAM,EAAE,EAAE;YACrD,IAAI,IAAI,CAAC,cAAc,CAAC,GAAG,CAAC,MAAM,CAAC;gBACjC,SAAS;YACX,MAAM,UAAU,GAAa,IAAI,CAAC,aAAa,CAAC,MAAM,CAAC,CAAC;YACxD,IAAI,UAAU,CAAC,MAAM,GAAG,GAAG,CAAC,MAAM;gBAChC,GAAG,CAAC,IAAI,CAAC,GAAG,IAAI,KAAK,CAAS,UAAU,CAAC,MAAM,GAAG,GAAG,CAAC,MAAM,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC;YAEzE,KAAK,MAAM,CAAC,WAAW,EAAE,OAAO,CAAC,IAAI,EAAE,CAAC,SAAS,CAAC,UAAU,CAAC,EAAE;gBAC7D,MAAM,QAAQ,GAAW,IAAI,CAAC,KAAK,CAAC,cAAc,CAAC,WAAW,EAAE,IAAI,CAAC,KAAK,CAAC,kBAAkB,CAAC,CAAC;gBAC/F,MAAM,WAAW,GAAW,IAAI,CAAC,KAAK,CAAC,cAAc,GAAG,QAAQ,CAAC,MAAM,GAAG,IAAI,CAAC,KAAK,CAAC,gBAAgB,CAAC;gBACtG,GAAG,CAAC,OAAO,CAAC,GAAG,IAAI,CAAC,GAAG,CAAC,GAAG,CAAC,OAAO,CAAC,IAAI,CAAC,EAAE,WAAW,CAAC,CAAC;aACzD;YACD,IAAI,CAAC,QAAQ,GAAG,IAAI,CAAC;SACtB;QACD,OAAO,GAAG,CAAC,CAAC,iCAAiC;IAC/C,CAAC;IAED,yCAAyC;IAClC,WAAW,CAAC,MAAc,EAAE,CAAS;QAC1C,MAAM,CAAC,oBAAoB,EAAE,uBAAuB,CAAC,GAAyB,IAAI,CAAC,qBAAqB,CAAC,MAAM,CAAC,CAAC;QACjH,MAAM,GAAG,GAAW,IAAI,CAAC,GAAG,CAAC,GAAG,CAAC,MAAM,CAAE,CAAC;QAC1C,MAAM,UAAU,GAAa,EAAE,CAAC,IAAI,CAAC,SAAS,CAAC,GAAG,CAAC,CAAC,CAAC,OAAO,EAAE,CAAC;
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+
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|
|
@@ -67,7 +67,7 @@ export function splitterAsFastaSimple(seq) {
|
|
|
67
67
|
*/
|
|
68
68
|
export function getSplitterWithSeparator(separator, limit = undefined) {
|
|
69
69
|
return (seq) => {
|
|
70
|
-
return seq.split(separator, limit);
|
|
70
|
+
return !seq ? [] : seq.split(separator, limit);
|
|
71
71
|
};
|
|
72
72
|
}
|
|
73
73
|
const helmRe = /(PEPTIDE1|DNA1|RNA1)\{([^}]+)}/g;
|
|
@@ -1 +1 @@
|
|
|
1
|
-
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|
|
1
|
+
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