@datagrok-libraries/bio 5.34.0 → 5.34.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
package/CHANGELOG.md
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#
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# bio changelog
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## 5.34.1 (2023-08-01)
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Patch release for a small fix for Macromolecule cell renderer
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*Dependency: datgarok-api >= 1.10.2*
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### Bug fixes
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* GROK-13659: Bio | Tools: Fix MaxMonomerLength Macromolecule cell renderer
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## 5.34.0 (2023-07-21)
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This release focuses on improving
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This release focuses on improving usability.
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*Dependency: datgarok-api >= 1.10.2*
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### Features
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*
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* Added `NotationConverter.getConverter()` getting a function to convert a single value.
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### Breaking change
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*
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* Removed `NotationConverter.convertStringToHelm()`.
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package/package.json
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"access": "public"
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},
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"friendlyName": "Datagrok bio library",
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"version": "5.34.
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"version": "5.34.1",
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"description": "",
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"dependencies": {
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"@datagrok-libraries/gridext": "^1.3.
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"@datagrok-libraries/gridext": "^1.3.64",
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"@datagrok-libraries/utils": "^2.5.0",
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"@datagrok-libraries/ml": "^6.3.28",
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"@deck.gl/core": "8.8.12",
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{"version":3,"file":"utils.d.ts","sourceRoot":"","sources":["utils.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAGtC,OAAO,EAAmB,aAAa,EAAE,YAAY,EAAE,WAAW,EAAE,YAAY,EAAC,MAAM,SAAS,CAAC;AACjG,OAAO,EAAC,QAAQ,EAA2D,MAAM,UAAU,CAAC;AAI5F,OAAO,EAAC,UAAU,EAAC,MAAM,oBAAoB,CAAC;AAK9C;;;;;GAKG;AACH,wBAAgB,cAAc,CAAC,MAAM,EAAE,EAAE,CAAC,MAAM,EAAE,SAAS,EAAE,MAAM,EAAE,QAAQ,EAAE,YAAY,GAAG,WAAW,CAKxG;AAwBD;;;GAGG;AACH,wBAAgB,eAAe,CAAC,GAAG,EAAE,GAAG,GAAG,MAAM,EAAE,CASlD;AAED;;;;GAIG;AACH,wBAAgB,wBAAwB,CAAC,SAAS,EAAE,MAAM,EAAE,KAAK,GAAE,MAAM,GAAG,SAAqB,GAAG,YAAY,CAI/G;AAKD;;;;GAIG;AACH,wBAAgB,cAAc,CAAC,GAAG,EAAE,GAAG,GAAG,MAAM,EAAE,CAgBjD;AAED,4EAA4E;AAC5E,MAAM,MAAM,kBAAkB,GAAG,CAAC,YAAY,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM,KAAK,MAAM,CAAC;AAEjF;;;;;GAKG;AACH,wBAAgB,WAAW,CAAC,KAAK,EAAE,MAAM,EAAE,SAAS,EAAE,MAAM,EAAE,KAAK,GAAE,MAAM,GAAG,SAAqB,GAAG,YAAY,CAWjH;AAED;;;GAGG;AACH,wBAAgB,oBAAoB,CAAC,GAAG,EAAE,EAAE,CAAC,MAAM,GAAG,YAAY,CAOjE;AAID,+CAA+C;AAC/C,wBAAgB,cAAc,CAAC,KAAK,EAAE,MAAM,EAAE,kBAAkB,EAAE,MAAM,GAAG,MAAM,
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{"version":3,"file":"utils.d.ts","sourceRoot":"","sources":["utils.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAGtC,OAAO,EAAmB,aAAa,EAAE,YAAY,EAAE,WAAW,EAAE,YAAY,EAAC,MAAM,SAAS,CAAC;AACjG,OAAO,EAAC,QAAQ,EAA2D,MAAM,UAAU,CAAC;AAI5F,OAAO,EAAC,UAAU,EAAC,MAAM,oBAAoB,CAAC;AAK9C;;;;;GAKG;AACH,wBAAgB,cAAc,CAAC,MAAM,EAAE,EAAE,CAAC,MAAM,EAAE,SAAS,EAAE,MAAM,EAAE,QAAQ,EAAE,YAAY,GAAG,WAAW,CAKxG;AAwBD;;;GAGG;AACH,wBAAgB,eAAe,CAAC,GAAG,EAAE,GAAG,GAAG,MAAM,EAAE,CASlD;AAED;;;;GAIG;AACH,wBAAgB,wBAAwB,CAAC,SAAS,EAAE,MAAM,EAAE,KAAK,GAAE,MAAM,GAAG,SAAqB,GAAG,YAAY,CAI/G;AAKD;;;;GAIG;AACH,wBAAgB,cAAc,CAAC,GAAG,EAAE,GAAG,GAAG,MAAM,EAAE,CAgBjD;AAED,4EAA4E;AAC5E,MAAM,MAAM,kBAAkB,GAAG,CAAC,YAAY,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM,KAAK,MAAM,CAAC;AAEjF;;;;;GAKG;AACH,wBAAgB,WAAW,CAAC,KAAK,EAAE,MAAM,EAAE,SAAS,EAAE,MAAM,EAAE,KAAK,GAAE,MAAM,GAAG,SAAqB,GAAG,YAAY,CAWjH;AAED;;;GAGG;AACH,wBAAgB,oBAAoB,CAAC,GAAG,EAAE,EAAE,CAAC,MAAM,GAAG,YAAY,CAOjE;AAID,+CAA+C;AAC/C,wBAAgB,cAAc,CAAC,KAAK,EAAE,MAAM,EAAE,kBAAkB,EAAE,MAAM,GAAG,MAAM,CAQhF;AAED,MAAM;AACN,wBAAgB,WAAW,CAAC,QAAQ,EAAE,QAAQ,GAAG,GAAG,CAAC,MAAM,CAAC,CAW3D;AAED;;;;;GAKG;AACH,wBAAgB,qBAAqB,CAAC,IAAI,EAAE,YAAY,EAAE,QAAQ,EAAE,GAAG,CAAC,MAAM,CAAC,EAAE,SAAS,GAAE,MAAY,GAAG,MAAM,CAchH;AAED,+BAA+B;AAC/B,wBAAgB,cAAc,CAAC,IAAI,EAAE,YAAY,EAAE,UAAU,EAAE,aAAa,EAAE,EAAE,SAAS,GAAE,MAAY,UAgBtG;AAED;;;;GAIG;AACH,wBAAgB,aAAa,CAAC,MAAM,EAAE,EAAE,CAAC,MAAM,EAAE,SAAS,GAAE,MAAU,GAAG,UAAU,CAYlF;AAED,wBAAgB,gBAAgB,CAAC,WAAW,EAAE,MAAM,GAAG,UAAU,CAWhE;AAED,wBAAgB,YAAY,CAAC,EAAE,EAAE,EAAE,CAAC,SAAS,GAAG,EAAE,CAAC,MAAM,GAAG,IAAI,CAS/D"}
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@@ -113,15 +113,16 @@ export function getSplitterForColumn(col) {
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const separator = col.getTag("separator" /* TAGS.separator */);
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return getSplitter(units, separator);
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}
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const longMonomerPartRe = /(
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const longMonomerPartRe = /([^\W_]+)/g;
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/** Convert long monomer names to short ones */
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export function monomerToShort(amino, maxLengthOfMonomer) {
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if (amino.length <= maxLengthOfMonomer)
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return amino;
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//const kebabAmino = amino.replace(/[A-Z]+(?![a-z])|[A-Z]/g, ($, ofs) => (ofs ? '-' : '') + $);
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const shortAminoMatch = amino.match(longMonomerPartRe);
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const needAddDots = amino.length > maxLengthOfMonomer || (shortAminoMatch?.length ?? 0) > 1;
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const shortAmino = shortAminoMatch?.[0] ?? ' ';
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return !needAddDots ? shortAmino : shortAmino.substring(0, maxLengthOfMonomer) + '…';
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return !needAddDots ? shortAmino : shortAmino.substring(0, maxLengthOfMonomer - 1) + '…';
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}
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/** */
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export function getAlphabet(alphabet) {
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{"version":3,"file":"utils.js","sourceRoot":"","sources":["utils.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAEtC,OAAO,EAAE,MAAM,IAAI,CAAC;AACpB,OAAO,EAAC,gBAAgB,EAAyD,MAAM,SAAS,CAAC;AACjG,OAAO,EAAW,SAAS,EAAE,kBAAkB,EAAE,SAAS,EAAE,QAAQ,EAAO,MAAM,UAAU,CAAC;AAC5F,OAAO,EAAC,YAAY,EAAC,MAAM,kBAAkB,CAAC;AAC9C,OAAO,EAAC,MAAM,EAAC,MAAM,iDAAiD,CAAC;AACvE,OAAO,EAAC,gBAAgB,EAAE,YAAY,EAAC,MAAM,iDAAiD,CAAC;AAE/F,OAAO,EAAC,kBAAkB,EAAC,MAAM,kBAAkB,CAAC;AACpD,OAAO,EAAC,mBAAmB,EAAC,MAAM,mBAAmB,CAAC;AACtD,OAAO,EAAC,kBAAkB,EAAC,MAAM,eAAe,CAAC;AAEjD;;;;;GAKG;AACH,MAAM,UAAU,cAAc,CAAC,MAAiB,EAAE,SAAiB,EAAE,QAAsB;IACzF,MAAM,IAAI,GAAG,MAAM,CAAC,UAAU,CAAC;IAC/B,MAAM,QAAQ,GAAuB,EAAE,CAAC,MAAM,CAAC,UAAU,EAAE,CAAC;SACzD,GAAG,CAAC,CAAC,IAAI,EAAE,EAAE,CAAC,QAAQ,CAAC,MAAM,CAAC,UAAU,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;IACpD,OAAO,QAAQ,CAAC,QAAQ,EAAE,SAAS,CAAC,CAAC;AACvC,CAAC;AAED,SAAS,QAAQ,CAAC,QAA4B,EAAE,SAAiB;IAC/D,MAAM,IAAI,GAA4B,EAAE,CAAC;IACzC,IAAI,UAAU,GAAG,IAAI,CAAC;IACtB,IAAI,WAAW,GAAG,IAAI,CAAC;IAEvB,KAAK,MAAM,IAAI,IAAI,QAAQ,EAAE;QAC3B,IAAI,WAAW,IAAI,IAAI;YACrB,WAAW,GAAG,IAAI,CAAC,MAAM,CAAC;aACvB,IAAI,IAAI,CAAC,MAAM,KAAK,WAAW;YAClC,UAAU,GAAG,KAAK,CAAC;QAErB,IAAI,IAAI,CAAC,MAAM,IAAI,SAAS,EAAE;YAC5B,KAAK,MAAM,CAAC,IAAI,IAAI,EAAE;gBACpB,IAAI,CAAC,CAAC,CAAC,IAAI,IAAI,CAAC;oBACd,IAAI,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC;gBACd,IAAI,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC;aACd;SACF;KACF;IACD,OAAO,EAAC,IAAI,EAAE,IAAI,EAAE,UAAU,EAAE,UAAU,EAAC,CAAC;AAC9C,CAAC;AAED;;;GAGG;AACH,MAAM,UAAU,eAAe,CAAC,GAAQ;IACtC,OAAO,GAAG,CAAC,QAAQ,EAAE,CAAC,OAAO,CAAC,SAAS,EAAE,KAAK,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC,OAAe,EAAE,EAAE;QAC1F,IAAI,OAAO,CAAC,UAAU,CAAC,GAAG,CAAC,IAAI,OAAO,CAAC,QAAQ,CAAC,GAAG,CAAC;YAClD,OAAO,OAAO,CAAC,KAAK,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC;aACzB,IAAI,OAAO,KAAK,GAAG;YACtB,OAAO,EAAE,CAAC;;YAEV,OAAO,OAAO,CAAC;IACnB,CAAC,CAAC,CAAC;AACL,CAAC;AAED;;;;GAIG;AACH,MAAM,UAAU,wBAAwB,CAAC,SAAiB,EAAE,QAA4B,SAAS;IAC/F,OAAO,CAAC,GAAW,EAAE,EAAE;QACrB,OAAO,GAAG,CAAC,KAAK,CAAC,SAAS,EAAE,KAAK,CAAC,CAAC;IACrC,CAAC,CAAC;AACJ,CAAC;AAED,MAAM,MAAM,GAAW,iCAAiC,CAAC;AACzD,MAAM,SAAS,GAAW,gBAAgB,CAAC;AAE3C;;;;GAIG;AACH,MAAM,UAAU,cAAc,CAAC,GAAQ;IACrC,MAAM,CAAC,SAAS,GAAG,CAAC,CAAC;IACrB,MAAM,EAAE,GAA2B,MAAM,CAAC,IAAI,CAAC,GAAG,CAAC,QAAQ,EAAE,CAAC,CAAC;IAC/D,MAAM,KAAK,GAAkB,EAAE,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC;IAE/C,MAAM,aAAa,GAAG,CAAC,EAAU,EAAU,EAAE;QAC3C,SAAS,CAAC,SAAS,GAAG,CAAC,CAAC;QACxB,MAAM,IAAI,GAAG,SAAS,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QAChC,IAAI,IAAI,IAAI,IAAI,CAAC,MAAM,IAAI,CAAC;YAC1B,OAAO,IAAI,CAAC,CAAC,CAAC,CAAC;;YAEf,OAAO,EAAE,CAAC;IACd,CAAC,CAAC;IAEF,MAAM,MAAM,GAAa,KAAK,CAAC,CAAC,CAAC,KAAK,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC;IACvD,OAAO,MAAM,CAAC,GAAG,CAAC,aAAa,CAAC,CAAC;AACnC,CAAC;AAKD;;;;;GAKG;AACH,MAAM,UAAU,WAAW,CAAC,KAAa,EAAE,SAAiB,EAAE,QAA4B,SAAS;IACjG,IAAI,KAAK,CAAC,WAAW,EAAE,CAAC,UAAU,CAAC,QAAQ,CAAC,KAAK,CAAC;QAChD,OAAO,eAAe,CAAC;SACpB,IAAI,KAAK,CAAC,WAAW,EAAE,CAAC,UAAU,CAAC,QAAQ,CAAC,SAAS,CAAC;QACzD,OAAO,wBAAwB,CAAC,SAAS,EAAE,KAAK,CAAC,CAAC;SAC/C,IAAI,KAAK,CAAC,WAAW,EAAE,CAAC,UAAU,CAAC,QAAQ,CAAC,IAAI,CAAC;QACpD,OAAO,cAAc,CAAC;;QAEtB,MAAM,IAAI,KAAK,CAAC,oBAAoB,KAAK,IAAI,CAAC,CAAC;IAEjD,0BAA0B;AAC5B,CAAC;AAED;;;GAGG;AACH,MAAM,UAAU,oBAAoB,CAAC,GAAc;IACjD,IAAI,GAAG,CAAC,OAAO,KAAK,EAAE,CAAC,OAAO,CAAC,aAAa;QAC1C,MAAM,IAAI,KAAK,CAAC,6BAA6B,EAAE,CAAC,OAAO,CAAC,aAAa,SAAS,CAAC,CAAC;IAElF,MAAM,KAAK,GAAG,GAAG,CAAC,MAAM,CAAC,EAAE,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC;IACxC,MAAM,SAAS,GAAG,GAAG,CAAC,MAAM,kCAAgB,CAAC;IAC7C,OAAO,WAAW,CAAC,KAAK,EAAE,SAAS,CAAC,CAAC;AACvC,CAAC;AAED,MAAM,iBAAiB,GAAW,
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