@datagrok-libraries/bio 5.32.1 → 5.32.3
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/package.json +1 -1
- package/src/utils/macromolecule/consts.d.ts.map +1 -1
- package/src/utils/macromolecule/consts.js +1 -1
- package/src/utils/macromolecule/consts.js.map +1 -1
- package/src/utils/macromolecule/utils.d.ts.map +1 -1
- package/src/utils/macromolecule/utils.js +8 -6
- package/src/utils/macromolecule/utils.js.map +1 -1
- package/src/utils/notation-converter.d.ts.map +1 -1
- package/src/utils/notation-converter.js +24 -16
- package/src/utils/notation-converter.js.map +1 -1
- package/src/utils/units-handler.js +1 -1
- package/src/utils/units-handler.js.map +1 -1
package/package.json
CHANGED
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@@ -1 +1 @@
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1
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-
{"version":3,"file":"consts.d.ts","sourceRoot":"","sources":["consts.ts"],"names":[],"mappings":"AAKA,OAAO,EAAC,aAAa,EAAC,MAAM,SAAS,CAAC;AAEtC,0EAA0E;AAC1E,0BAAkB,QAAQ;IACxB,KAAK,UAAU;IACf,SAAS,cAAc;IACvB,IAAI,SAAS;CACd;AAED,0BAAkB,SAAS;IACzB,OAAO,YAAY;IACnB,GAAG,QAAQ;CACZ;AAED,0BAAkB,QAAQ;IACxB,GAAG,QAAQ;IACX,GAAG,QAAQ;IACX,EAAE,OAAO;IACT,cAAc;IACd,EAAE,OAAO;CACV;AAED,0BAAkB,IAAI;IACpB,OAAO,YAAY;IACnB,QAAQ,aAAa;IACrB,YAAY,kBAAkB;IAC9B,mBAAmB,yBAAyB;IAC5C,SAAS,cAAc;IACvB,gBAAgB,sBAAsB;CACvC;AAED,eAAO,MAAM,SAAS,EAAE,
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1
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+
{"version":3,"file":"consts.d.ts","sourceRoot":"","sources":["consts.ts"],"names":[],"mappings":"AAKA,OAAO,EAAC,aAAa,EAAC,MAAM,SAAS,CAAC;AAEtC,0EAA0E;AAC1E,0BAAkB,QAAQ;IACxB,KAAK,UAAU;IACf,SAAS,cAAc;IACvB,IAAI,SAAS;CACd;AAED,0BAAkB,SAAS;IACzB,OAAO,YAAY;IACnB,GAAG,QAAQ;CACZ;AAED,0BAAkB,QAAQ;IACxB,GAAG,QAAQ;IACX,GAAG,QAAQ;IACX,EAAE,OAAO;IACT,cAAc;IACd,EAAE,OAAO;CACV;AAED,0BAAkB,IAAI;IACpB,OAAO,YAAY;IACnB,QAAQ,aAAa;IACrB,YAAY,kBAAkB;IAC9B,mBAAmB,yBAAyB;IAC5C,SAAS,cAAc;IACvB,gBAAgB,sBAAsB;CACvC;AAED,eAAO,MAAM,SAAS,EAAE,MAAkC,CAAC;AAE3D,eAAO,MAAM,SAAS;;;;;;CASnB,CAAC;AAEJ,eAAO,MAAM,kBAAkB,EAAE,aAAa,EAI7C,CAAC"}
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@@ -1 +1 @@
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1
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-
{"version":3,"file":"consts.js","sourceRoot":"","sources":["consts.ts"],"names":[],"mappings":"AAKA,OAAO,EAAC,aAAa,EAAC,MAAM,SAAS,CAAC;AA+BtC,MAAM,CAAC,MAAM,SAAS,GAAW,
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1
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{"version":3,"file":"consts.js","sourceRoot":"","sources":["consts.ts"],"names":[],"mappings":"AAKA,OAAO,EAAC,aAAa,EAAC,MAAM,SAAS,CAAC;AA+BtC,MAAM,CAAC,MAAM,SAAS,GAAW,yBAAyB,CAAC;AAE3D,MAAM,CAAC,MAAM,SAAS,GAAG,IAAI;IAAA;QAC3B,UAAK,GAAG;YACN,OAAO,EAAE,IAAI,GAAG,CAAS;gBACvB,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG;gBAChD,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG;aACjD,CAAC;YACF,GAAG,EAAE,IAAI,GAAG,CAAS,CAAC,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,CAAC,CAAC;YAC1C,GAAG,EAAE,IAAI,GAAG,CAAS,CAAC,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,CAAC,CAAC;SAC3C,CAAC;IACJ,CAAC;CAAA,EAAE,CAAC;AAEJ,MAAM,CAAC,MAAM,kBAAkB,GAAoB;IACjD,IAAI,aAAa,yBAAc,SAAS,CAAC,KAAK,CAAC,OAAO,EAAE,IAAI,CAAC;IAC7D,IAAI,aAAa,2BAAe,SAAS,CAAC,KAAK,CAAC,GAAG,EAAE,IAAI,CAAC;IAC1D,IAAI,aAAa,2BAAe,SAAS,CAAC,KAAK,CAAC,GAAG,EAAE,IAAI,CAAC;CAC3D,CAAC"}
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1
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{"version":3,"file":"utils.d.ts","sourceRoot":"","sources":["utils.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAGtC,OAAO,EAAmB,aAAa,EAAE,YAAY,EAAE,WAAW,EAAE,YAAY,EAAC,MAAM,SAAS,CAAC;AACjG,OAAO,EAAC,QAAQ,EAA2D,MAAM,UAAU,CAAC;AAI5F,OAAO,EAAC,UAAU,EAAC,MAAM,oBAAoB,CAAC;AAK9C;;;;;GAKG;AACH,wBAAgB,cAAc,CAAC,MAAM,EAAE,EAAE,CAAC,MAAM,EAAE,SAAS,EAAE,MAAM,EAAE,QAAQ,EAAE,YAAY,GAAG,WAAW,CAKxG;AAwBD;;;GAGG;AACH,wBAAgB,eAAe,CAAC,GAAG,EAAE,GAAG,GAAG,MAAM,EAAE,
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{"version":3,"file":"utils.d.ts","sourceRoot":"","sources":["utils.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAGtC,OAAO,EAAmB,aAAa,EAAE,YAAY,EAAE,WAAW,EAAE,YAAY,EAAC,MAAM,SAAS,CAAC;AACjG,OAAO,EAAC,QAAQ,EAA2D,MAAM,UAAU,CAAC;AAI5F,OAAO,EAAC,UAAU,EAAC,MAAM,oBAAoB,CAAC;AAK9C;;;;;GAKG;AACH,wBAAgB,cAAc,CAAC,MAAM,EAAE,EAAE,CAAC,MAAM,EAAE,SAAS,EAAE,MAAM,EAAE,QAAQ,EAAE,YAAY,GAAG,WAAW,CAKxG;AAwBD;;;GAGG;AACH,wBAAgB,eAAe,CAAC,GAAG,EAAE,GAAG,GAAG,MAAM,EAAE,CASlD;AAED;;;;GAIG;AACH,wBAAgB,wBAAwB,CAAC,SAAS,EAAE,MAAM,EAAE,KAAK,GAAE,MAAM,GAAG,SAAqB,GAAG,YAAY,CAI/G;AAKD;;;;GAIG;AACH,wBAAgB,cAAc,CAAC,GAAG,EAAE,GAAG,GAAG,MAAM,EAAE,CAgBjD;AAED;;;;;GAKG;AACH,wBAAgB,WAAW,CAAC,KAAK,EAAE,MAAM,EAAE,SAAS,EAAE,MAAM,EAAE,KAAK,GAAE,MAAM,GAAG,SAAqB,GAAG,YAAY,CAWjH;AAED;;;GAGG;AACH,wBAAgB,oBAAoB,CAAC,GAAG,EAAE,EAAE,CAAC,MAAM,GAAG,YAAY,CAOjE;AAID,+CAA+C;AAC/C,wBAAgB,cAAc,CAAC,KAAK,EAAE,MAAM,EAAE,kBAAkB,EAAE,MAAM,GAAG,MAAM,CAKhF;AAED,MAAM;AACN,wBAAgB,WAAW,CAAC,QAAQ,EAAE,QAAQ,GAAG,GAAG,CAAC,MAAM,CAAC,CAW3D;AAED;;;;;GAKG;AACH,wBAAgB,qBAAqB,CAAC,IAAI,EAAE,YAAY,EAAE,QAAQ,EAAE,GAAG,CAAC,MAAM,CAAC,EAAE,SAAS,GAAE,MAAY,GAAG,MAAM,CAchH;AAED,+BAA+B;AAC/B,wBAAgB,cAAc,CAAC,IAAI,EAAE,YAAY,EAAE,UAAU,EAAE,aAAa,EAAE,EAAE,SAAS,GAAE,MAAY,UAgBtG;AAED;;;;GAIG;AACH,wBAAgB,aAAa,CAAC,MAAM,EAAE,EAAE,CAAC,MAAM,EAAE,SAAS,GAAE,MAAU,GAAG,UAAU,CAYlF;AAED,wBAAgB,gBAAgB,CAAC,WAAW,EAAE,MAAM,GAAG,UAAU,CAWhE;AAED,wBAAgB,YAAY,CAAC,EAAE,EAAE,EAAE,CAAC,SAAS,GAAG,EAAE,CAAC,MAAM,GAAG,IAAI,CAS/D"}
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@@ -44,12 +44,14 @@ function getStats(splitted, minLength) {
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* @return {string[]} array of monomers
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*/
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export function splitterAsFasta(seq) {
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return
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return seq.toString().replace(monomerRe, '.$1').slice(1).split('.').map((monomer) => {
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if (monomer.startsWith('[') && monomer.endsWith(']'))
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return monomer.slice(1, -1);
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else if (monomer === '-')
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return '';
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else
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return monomer;
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});
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}
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/** Gets method to split sequence by separator
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* @param {string} separator
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-
{"version":3,"file":"utils.js","sourceRoot":"","sources":["utils.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAEtC,OAAO,EAAE,MAAM,IAAI,CAAC;AACpB,OAAO,EAAC,gBAAgB,EAAyD,MAAM,SAAS,CAAC;AACjG,OAAO,EAAW,SAAS,EAAE,kBAAkB,EAAE,SAAS,EAAiB,MAAM,UAAU,CAAC;AAC5F,OAAO,EAAC,YAAY,EAAC,MAAM,kBAAkB,CAAC;AAC9C,OAAO,EAAC,MAAM,EAAC,MAAM,iDAAiD,CAAC;AACvE,OAAO,EAAC,gBAAgB,EAAE,YAAY,EAAC,MAAM,iDAAiD,CAAC;AAE/F,OAAO,EAAC,kBAAkB,EAAC,MAAM,kBAAkB,CAAC;AACpD,OAAO,EAAC,mBAAmB,EAAC,MAAM,mBAAmB,CAAC;AACtD,OAAO,EAAC,kBAAkB,EAAC,MAAM,eAAe,CAAC;AAEjD;;;;;GAKG;AACH,MAAM,UAAU,cAAc,CAAC,MAAiB,EAAE,SAAiB,EAAE,QAAsB;IACzF,MAAM,IAAI,GAAG,MAAM,CAAC,UAAU,CAAC;IAC/B,MAAM,QAAQ,GAAuB,EAAE,CAAC,MAAM,CAAC,UAAU,EAAE,CAAC;SACzD,GAAG,CAAC,CAAC,IAAI,EAAE,EAAE,CAAC,QAAQ,CAAC,MAAM,CAAC,UAAU,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;IACpD,OAAO,QAAQ,CAAC,QAAQ,EAAE,SAAS,CAAC,CAAC;AACvC,CAAC;AAED,SAAS,QAAQ,CAAC,QAA4B,EAAE,SAAiB;IAC/D,MAAM,IAAI,GAA4B,EAAE,CAAC;IACzC,IAAI,UAAU,GAAG,IAAI,CAAC;IACtB,IAAI,WAAW,GAAG,IAAI,CAAC;IAEvB,KAAK,MAAM,IAAI,IAAI,QAAQ,EAAE;QAC3B,IAAI,WAAW,IAAI,IAAI;YACrB,WAAW,GAAG,IAAI,CAAC,MAAM,CAAC;aACvB,IAAI,IAAI,CAAC,MAAM,KAAK,WAAW;YAClC,UAAU,GAAG,KAAK,CAAC;QAErB,IAAI,IAAI,CAAC,MAAM,IAAI,SAAS,EAAE;YAC5B,KAAK,MAAM,CAAC,IAAI,IAAI,EAAE;gBACpB,IAAI,CAAC,CAAC,CAAC,IAAI,IAAI,CAAC;oBACd,IAAI,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC;gBACd,IAAI,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC;aACd;SACF;KACF;IACD,OAAO,EAAC,IAAI,EAAE,IAAI,EAAE,UAAU,EAAE,UAAU,EAAC,CAAC;AAC9C,CAAC;AAED;;;GAGG;AACH,MAAM,UAAU,eAAe,CAAC,GAAQ;IACtC,OAAO,
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+
{"version":3,"file":"utils.js","sourceRoot":"","sources":["utils.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAEtC,OAAO,EAAE,MAAM,IAAI,CAAC;AACpB,OAAO,EAAC,gBAAgB,EAAyD,MAAM,SAAS,CAAC;AACjG,OAAO,EAAW,SAAS,EAAE,kBAAkB,EAAE,SAAS,EAAiB,MAAM,UAAU,CAAC;AAC5F,OAAO,EAAC,YAAY,EAAC,MAAM,kBAAkB,CAAC;AAC9C,OAAO,EAAC,MAAM,EAAC,MAAM,iDAAiD,CAAC;AACvE,OAAO,EAAC,gBAAgB,EAAE,YAAY,EAAC,MAAM,iDAAiD,CAAC;AAE/F,OAAO,EAAC,kBAAkB,EAAC,MAAM,kBAAkB,CAAC;AACpD,OAAO,EAAC,mBAAmB,EAAC,MAAM,mBAAmB,CAAC;AACtD,OAAO,EAAC,kBAAkB,EAAC,MAAM,eAAe,CAAC;AAEjD;;;;;GAKG;AACH,MAAM,UAAU,cAAc,CAAC,MAAiB,EAAE,SAAiB,EAAE,QAAsB;IACzF,MAAM,IAAI,GAAG,MAAM,CAAC,UAAU,CAAC;IAC/B,MAAM,QAAQ,GAAuB,EAAE,CAAC,MAAM,CAAC,UAAU,EAAE,CAAC;SACzD,GAAG,CAAC,CAAC,IAAI,EAAE,EAAE,CAAC,QAAQ,CAAC,MAAM,CAAC,UAAU,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;IACpD,OAAO,QAAQ,CAAC,QAAQ,EAAE,SAAS,CAAC,CAAC;AACvC,CAAC;AAED,SAAS,QAAQ,CAAC,QAA4B,EAAE,SAAiB;IAC/D,MAAM,IAAI,GAA4B,EAAE,CAAC;IACzC,IAAI,UAAU,GAAG,IAAI,CAAC;IACtB,IAAI,WAAW,GAAG,IAAI,CAAC;IAEvB,KAAK,MAAM,IAAI,IAAI,QAAQ,EAAE;QAC3B,IAAI,WAAW,IAAI,IAAI;YACrB,WAAW,GAAG,IAAI,CAAC,MAAM,CAAC;aACvB,IAAI,IAAI,CAAC,MAAM,KAAK,WAAW;YAClC,UAAU,GAAG,KAAK,CAAC;QAErB,IAAI,IAAI,CAAC,MAAM,IAAI,SAAS,EAAE;YAC5B,KAAK,MAAM,CAAC,IAAI,IAAI,EAAE;gBACpB,IAAI,CAAC,CAAC,CAAC,IAAI,IAAI,CAAC;oBACd,IAAI,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC;gBACd,IAAI,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC;aACd;SACF;KACF;IACD,OAAO,EAAC,IAAI,EAAE,IAAI,EAAE,UAAU,EAAE,UAAU,EAAC,CAAC;AAC9C,CAAC;AAED;;;GAGG;AACH,MAAM,UAAU,eAAe,CAAC,GAAQ;IACtC,OAAO,GAAG,CAAC,QAAQ,EAAE,CAAC,OAAO,CAAC,SAAS,EAAE,KAAK,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC,OAAe,EAAE,EAAE;QAC1F,IAAI,OAAO,CAAC,UAAU,CAAC,GAAG,CAAC,IAAI,OAAO,CAAC,QAAQ,CAAC,GAAG,CAAC;YAClD,OAAO,OAAO,CAAC,KAAK,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC;aACzB,IAAI,OAAO,KAAK,GAAG;YACtB,OAAO,EAAE,CAAC;;YAEV,OAAO,OAAO,CAAC;IACnB,CAAC,CAAC,CAAC;AACL,CAAC;AAED;;;;GAIG;AACH,MAAM,UAAU,wBAAwB,CAAC,SAAiB,EAAE,QAA4B,SAAS;IAC/F,OAAO,CAAC,GAAW,EAAE,EAAE;QACrB,OAAO,GAAG,CAAC,KAAK,CAAC,SAAS,EAAE,KAAK,CAAC,CAAC;IACrC,CAAC,CAAC;AACJ,CAAC;AAED,MAAM,MAAM,GAAW,iCAAiC,CAAC;AACzD,MAAM,SAAS,GAAW,gBAAgB,CAAC;AAE3C;;;;GAIG;AACH,MAAM,UAAU,cAAc,CAAC,GAAQ;IACrC,MAAM,CAAC,SAAS,GAAG,CAAC,CAAC;IACrB,MAAM,EAAE,GAA2B,MAAM,CAAC,IAAI,CAAC,GAAG,CAAC,QAAQ,EAAE,CAAC,CAAC;IAC/D,MAAM,KAAK,GAAkB,EAAE,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC;IAE/C,MAAM,aAAa,GAAG,CAAC,EAAU,EAAU,EAAE;QAC3C,SAAS,CAAC,SAAS,GAAG,CAAC,CAAC;QACxB,MAAM,IAAI,GAAG,SAAS,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QAChC,IAAI,IAAI,IAAI,IAAI,CAAC,MAAM,IAAI,CAAC;YAC1B,OAAO,IAAI,CAAC,CAAC,CAAC,CAAC;;YAEf,OAAO,EAAE,CAAC;IACd,CAAC,CAAC;IAEF,MAAM,MAAM,GAAa,KAAK,CAAC,CAAC,CAAC,KAAK,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC;IACvD,OAAO,MAAM,CAAC,GAAG,CAAC,aAAa,CAAC,CAAC;AACnC,CAAC;AAED;;;;;GAKG;AACH,MAAM,UAAU,WAAW,CAAC,KAAa,EAAE,SAAiB,EAAE,QAA4B,SAAS;IACjG,IAAI,KAAK,CAAC,WAAW,EAAE,CAAC,UAAU,8BAAgB;QAChD,OAAO,eAAe,CAAC;SACpB,IAAI,KAAK,CAAC,WAAW,EAAE,CAAC,UAAU,sCAAoB;QACzD,OAAO,wBAAwB,CAAC,SAAS,EAAE,KAAK,CAAC,CAAC;SAC/C,IAAI,KAAK,CAAC,WAAW,EAAE,CAAC,UAAU,4BAAe;QACpD,OAAO,cAAc,CAAC;;QAEtB,MAAM,IAAI,KAAK,CAAC,oBAAoB,KAAK,IAAI,CAAC,CAAC;IAEjD,0BAA0B;AAC5B,CAAC;AAED;;;GAGG;AACH,MAAM,UAAU,oBAAoB,CAAC,GAAc;IACjD,IAAI,GAAG,CAAC,OAAO,KAAK,EAAE,CAAC,OAAO,CAAC,aAAa;QAC1C,MAAM,IAAI,KAAK,CAAC,6BAA6B,EAAE,CAAC,OAAO,CAAC,aAAa,SAAS,CAAC,CAAC;IAElF,MAAM,KAAK,GAAG,GAAG,CAAC,MAAM,CAAC,EAAE,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC;IACxC,MAAM,SAAS,GAAG,GAAG,CAAC,MAAM,kCAAgB,CAAC;IAC7C,OAAO,WAAW,CAAC,KAAK,EAAE,SAAS,CAAC,CAAC;AACvC,CAAC;AAED,MAAM,iBAAiB,GAAW,QAAQ,CAAC;AAE3C,+CAA+C;AAC/C,MAAM,UAAU,cAAc,CAAC,KAAa,EAAE,kBAA0B;;IACtE,MAAM,eAAe,GAA4B,KAAK,CAAC,KAAK,CAAC,iBAAiB,CAAC,CAAC;IAChF,MAAM,WAAW,GAAY,KAAK,CAAC,MAAM,GAAG,kBAAkB,IAAI,CAAC,MAAA,eAAe,aAAf,eAAe,uBAAf,eAAe,CAAE,MAAM,mCAAI,CAAC,CAAC,GAAG,CAAC,CAAC;IACrG,MAAM,UAAU,GAAG,MAAA,eAAe,aAAf,eAAe,uBAAf,eAAe,CAAG,CAAC,CAAC,mCAAI,GAAG,CAAC;IAC/C,OAAO,CAAC,WAAW,CAAC,CAAC,CAAC,UAAU,CAAC,CAAC,CAAC,UAAU,CAAC,SAAS,CAAC,CAAC,EAAE,kBAAkB,CAAC,GAAG,GAAG,CAAC;AACvF,CAAC;AAED,MAAM;AACN,MAAM,UAAU,WAAW,CAAC,QAAkB;IAC5C,QAAQ,QAAQ,EAAE;QAChB;YACE,OAAO,SAAS,CAAC,KAAK,CAAC,GAAG,CAAC;QAC7B;YACE,OAAO,SAAS,CAAC,KAAK,CAAC,GAAG,CAAC;QAC7B;YACE,OAAO,SAAS,CAAC,KAAK,CAAC,OAAO,CAAC;QACjC;YACE,MAAM,IAAI,KAAK,CAAC,yBAAyB,QAAQ,IAAI,CAAC,CAAC;KAC1D;AACH,CAAC;AAED;;;;;GAKG;AACH,MAAM,UAAU,qBAAqB,CAAC,IAAkB,EAAE,QAAqB,EAAE,YAAoB,GAAG;IACtG,MAAM,IAAI,GAAG,IAAI,GAAG,CAAS,CAAC,GAAG,IAAI,GAAG,CAAC,MAAM,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC,EAAE,GAAG,QAAQ,CAAC,CAAC,CAAC;IAC3E,IAAI,CAAC,MAAM,CAAC,SAAS,CAAC,CAAC;IAEvB,MAAM,KAAK,GAAa,EAAE,CAAC;IAC3B,MAAM,SAAS,GAAa,EAAE,CAAC;IAC/B,KAAK,MAAM,CAAC,IAAI,IAAI,EAAE;QACpB,KAAK,CAAC,IAAI,CAAC,CAAC,IAAI,IAAI,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;QACpC,SAAS,CAAC,IAAI,CAAC,QAAQ,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;KACzC;IACD,0FAA0F;IAC1F,MAAM,KAAK,GAAW,IAAI,MAAM,CAAC,KAAK,CAAC,CAAC;IACxC,MAAM,SAAS,GAAW,IAAI,MAAM,CAAC,SAAS,CAAC,CAAC;IAChD,OAAO,gBAAgB,CAAC,KAAK,EAAE,SAAS,CAAC,GAAG,CAAC,YAAY,CAAC,KAAK,CAAC,GAAG,YAAY,CAAC,SAAS,CAAC,CAAC,CAAC;AAC9F,CAAC;AAED,+BAA+B;AAC/B,MAAM,UAAU,cAAc,CAAC,IAAkB,EAAE,UAA2B,EAAE,YAAoB,GAAG;IACrG,MAAM,cAAc,GAAuB,UAAU,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE;QAC9D,MAAM,GAAG,GAAG,qBAAqB,CAAC,IAAI,EAAE,CAAC,CAAC,QAAQ,EAAE,SAAS,CAAC,CAAC;QAC/D,OAAO,IAAI,gBAAgB,CAAC,CAAC,EAAE,IAAI,EAAE,GAAG,CAAC,CAAC;IAC5C,CAAC,CAAC,CAAC;IAEH,IAAI,YAAoB,CAAC;IACzB,MAAM,MAAM,GAAG,IAAI,CAAC,GAAG,CAAC,GAAG,cAAc,CAAC,GAAG,CAC3C,CAAC,EAAE,EAAE,EAAE,CAAC,EAAE,CAAC,UAAU,GAAG,EAAE,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,UAAU,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;IAC3D,IAAI,MAAM,GAAG,CAAC,EAAE;QACd,MAAM,GAAG,GAAG,cAAc,CAAC,IAAI,CAAC,CAAC,EAAE,EAAE,EAAE,CAAC,EAAE,CAAC,UAAU,KAAK,MAAM,CAAE,CAAC;QACnE,YAAY,GAAG,GAAG,CAAC,IAAI,CAAC;KACzB;SAAM;QACL,YAAY,yBAAc,CAAC;KAC5B;IACD,OAAO,YAAY,CAAC;AACtB,CAAC;AAED;;;;GAIG;AACH,MAAM,UAAU,aAAa,CAAC,MAAiB,EAAE,YAAoB,CAAC;IACpE,IAAI,QAAgB,CAAC;IACrB,IAAI,MAAM,CAAC,OAAO,IAAI,EAAE,CAAC,OAAO,CAAC,aAAa,EAAE;QAC9C,MAAM,EAAE,GAAiB,YAAY,CAAC,WAAW,CAAC,MAAM,CAAC,CAAC;QAC1D,QAAQ,GAAG,EAAE,CAAC,QAAQ,CAAC;KACxB;SAAM;QACL,MAAM,KAAK,GAAgB,cAAc,CAAC,MAAM,EAAE,SAAS,EAAE,eAAe,CAAC,CAAC;QAC9E,QAAQ,GAAG,cAAc,CAAC,KAAK,CAAC,IAAI,EAAE,kBAAkB,CAAC,CAAC;KAC3D;IAED,MAAM,GAAG,GAAG,gBAAgB,CAAC,QAAQ,CAAC,CAAC;IACvC,OAAO,GAAG,CAAC;AACb,CAAC;AAED,MAAM,UAAU,gBAAgB,CAAC,WAAmB;IAClD,QAAQ,WAAW,EAAE;QACnB;YACE,OAAO,kBAAkB,CAAC,UAAU,CAAC;QACvC,8BAAkB;QAClB;YACE,OAAO,mBAAmB,CAAC,YAAY,CAAC;QAC1C,QAAQ;QACR;YACE,OAAO,kBAAkB,CAAC,KAAK,CAAC;KACnC;AACH,CAAC;AAED,MAAM,UAAU,YAAY,CAAC,EAAgB;;IAC3C,MAAM,cAAc,GAAG,EAAE,CAAC,OAAO,CAAC,YAAY,CAAC,EAAE,CAAC,OAAO,CAAC,aAAa,CAAC,CAAC;IACzE,IAAI,MAAM,GAAqB,MAAA,cAAc,CAAC,IAAI,CAAC,CAAC,GAAG,EAAE,EAAE;QACzD,MAAM,KAAK,GAAG,GAAG,CAAC,MAAM,CAAC,EAAE,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC;QACxC,OAAO,KAAK,CAAC,CAAC,CAAC,KAAK,CAAC,OAAO,CAAC,KAAK,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,KAAK,CAAC;IACrD,CAAC,CAAC,mCAAI,IAAI,CAAC;IACX,IAAI,CAAC,MAAM,IAAI,cAAc,CAAC,MAAM,GAAG,CAAC;QACtC,MAAM,GAAG,cAAc,CAAC,CAAC,CAAC,CAAC;IAC7B,OAAO,MAAM,CAAC;AAChB,CAAC"}
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"notation-converter.d.ts","sourceRoot":"","sources":["notation-converter.ts"],"names":[],"mappings":"AAGA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAEtC,OAAO,EAAC,YAAY,EAAC,MAAM,iBAAiB,CAAC;AAC7C,OAAO,EAAc,YAAY,EAAC,MAAM,uBAAuB,CAAC;AAChE,OAAO,EAAC,QAAQ,EAAO,MAAM,wBAAwB,CAAC;AAGtD,iFAAiF;AACjF,qBAAa,iBAAkB,SAAQ,YAAY;IACjD,OAAO,CAAC,SAAS,CAA6B;IAE9C,SAAS,KAAK,QAAQ,IAAI,YAAY,CAIrC;IAEM,OAAO,CAAC,cAAc,EAAE,QAAQ,GAAG,OAAO;IAE1C,WAAW,CAAC,cAAc,EAAE,QAAQ,GAAG,OAAO;IAE9C,MAAM,CAAC,cAAc,EAAE,QAAQ,GAAG,OAAO;IAEhD;;;;;;OAMG;IACH,OAAO,CAAC,uBAAuB;IAmB/B;;;;;OAKG;IACH,OAAO,CAAC,eAAe;IAiBvB,OAAO,CAAC,mBAAmB;
|
|
1
|
+
{"version":3,"file":"notation-converter.d.ts","sourceRoot":"","sources":["notation-converter.ts"],"names":[],"mappings":"AAGA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAEtC,OAAO,EAAC,YAAY,EAAC,MAAM,iBAAiB,CAAC;AAC7C,OAAO,EAAc,YAAY,EAAC,MAAM,uBAAuB,CAAC;AAChE,OAAO,EAAC,QAAQ,EAAO,MAAM,wBAAwB,CAAC;AAGtD,iFAAiF;AACjF,qBAAa,iBAAkB,SAAQ,YAAY;IACjD,OAAO,CAAC,SAAS,CAA6B;IAE9C,SAAS,KAAK,QAAQ,IAAI,YAAY,CAIrC;IAEM,OAAO,CAAC,cAAc,EAAE,QAAQ,GAAG,OAAO;IAE1C,WAAW,CAAC,cAAc,EAAE,QAAQ,GAAG,OAAO;IAE9C,MAAM,CAAC,cAAc,EAAE,QAAQ,GAAG,OAAO;IAEhD;;;;;;OAMG;IACH,OAAO,CAAC,uBAAuB;IAmB/B;;;;;OAKG;IACH,OAAO,CAAC,eAAe;IAiBvB,OAAO,CAAC,mBAAmB;IAoB3B;;;;;;;OAOG;IACI,mBAAmB,CACxB,aAAa,EAAE,MAAM,EACrB,eAAe,GAAE,MAAM,GAAG,IAAW,GACpC,MAAM;IAOT;;;;;OAKG;IACH,OAAO,CAAC,aAAa;IAgBrB;;;;;OAKG;IACH,OAAO,CAAC,uBAAuB;IA6B/B;;;;;;;;;OASG;IACI,2BAA2B,CAChC,WAAW,EAAE,MAAM,EAAE,WAAW,EAAE,MAAM,EAAE,YAAY,CAAC,EAAE,MAAM,EAAE,YAAY,CAAC,EAAE,MAAM,GACrF,MAAM;IAgCT;;;;;;;;OAQG;IACH,OAAO,CAAC,WAAW;IAqBnB,OAAO,CAAC,sBAAsB;IAK9B;;;;;OAKG;IACI,OAAO,CAAC,WAAW,EAAE,QAAQ,EAAE,YAAY,GAAE,MAAM,GAAG,IAAW,GAAG,EAAE,CAAC,MAAM;gBAuBjE,GAAG,EAAE,EAAE,CAAC,MAAM;CAGlC"}
|
|
@@ -43,11 +43,11 @@ export class NotationConverter extends UnitsHandler {
|
|
|
43
43
|
*/
|
|
44
44
|
getHelmWrappers() {
|
|
45
45
|
const prefix = (this.isDna()) ? 'DNA1{' :
|
|
46
|
-
(this.isRna() || this.isHelmCompatible()) ? 'RNA1{' :
|
|
47
|
-
|
|
48
|
-
|
|
49
|
-
if (prefix === 'Unknown')
|
|
50
|
-
|
|
46
|
+
(this.isRna() || this.isHelmCompatible()) ? 'RNA1{' : 'PEPTIDE1{';
|
|
47
|
+
// (this.isPeptide()) ? 'PEPTIDE1{' :
|
|
48
|
+
// 'Unknown'; // this case should be handled as exceptional
|
|
49
|
+
// if (prefix === 'Unknown')
|
|
50
|
+
// throw new Error('Neither peptide, nor nucleotide');
|
|
51
51
|
const postfix = '}$$$$';
|
|
52
52
|
const leftWrapper = (this.isDna()) ? 'D(' :
|
|
53
53
|
(this.isRna()) ? 'R(' : ''; // no wrapper for peptides
|
|
@@ -58,10 +58,13 @@ export class NotationConverter extends UnitsHandler {
|
|
|
58
58
|
convertToHelmHelper(sourcePolymer, sourceGapSymbol, prefix, leftWrapper, rightWrapper, postfix) {
|
|
59
59
|
const monomerArray = this.splitter(sourcePolymer);
|
|
60
60
|
const monomerHelmArray = monomerArray.map((mm) => {
|
|
61
|
-
if (!mm || mm === sourceGapSymbol)
|
|
61
|
+
if (!mm || mm === sourceGapSymbol) {
|
|
62
62
|
return UnitsHandler._defaultGapSymbolsDict.HELM;
|
|
63
|
-
|
|
64
|
-
|
|
63
|
+
}
|
|
64
|
+
else {
|
|
65
|
+
return mm.length == 1 ? `${leftWrapper}${mm}${rightWrapper}` :
|
|
66
|
+
`${leftWrapper}[${mm}]${rightWrapper}`;
|
|
67
|
+
}
|
|
65
68
|
});
|
|
66
69
|
return `${prefix}${monomerHelmArray.join('.')}${postfix}`;
|
|
67
70
|
}
|
|
@@ -149,9 +152,8 @@ export class NotationConverter extends UnitsHandler {
|
|
|
149
152
|
UnitsHandler._defaultGapSymbolsDict.FASTA :
|
|
150
153
|
UnitsHandler._defaultGapSymbolsDict.SEPARATOR;
|
|
151
154
|
}
|
|
152
|
-
if (!tgtSeparator)
|
|
155
|
+
if (!tgtSeparator)
|
|
153
156
|
tgtSeparator = (this.toFasta(tgtNotation)) ? '' : this.separator;
|
|
154
|
-
}
|
|
155
157
|
const helmWrappersRe = /(R\(|D\(|\)|P)/g;
|
|
156
158
|
const isNucleotide = helmPolymer.startsWith('DNA') || helmPolymer.startsWith('RNA');
|
|
157
159
|
// items can be monomers or helms
|
|
@@ -218,19 +220,25 @@ export class NotationConverter extends UnitsHandler {
|
|
|
218
220
|
throw new Error('tgt notation is invalid');
|
|
219
221
|
if (this.toSeparator(tgtNotation) && tgtSeparator === null)
|
|
220
222
|
throw new Error('tgt separator is not specified');
|
|
221
|
-
if (this.isFasta() && this.toSeparator(tgtNotation) && tgtSeparator !== null)
|
|
223
|
+
if (this.isFasta() && this.toSeparator(tgtNotation) && tgtSeparator !== null) {
|
|
222
224
|
return this.convertFastaToSeparator(tgtSeparator);
|
|
223
|
-
|
|
225
|
+
}
|
|
226
|
+
else if ((this.isFasta() || this.isSeparator()) && this.toHelm(tgtNotation)) {
|
|
224
227
|
return this.convertToHelm();
|
|
225
|
-
|
|
228
|
+
}
|
|
229
|
+
else if (this.isSeparator() && this.toFasta(tgtNotation)) {
|
|
226
230
|
return this.convertSeparatorToFasta();
|
|
227
|
-
|
|
231
|
+
}
|
|
232
|
+
else if (this.isHelm() && this.toFasta(tgtNotation)) { // the case of HELM
|
|
228
233
|
return this.convertHelm(tgtNotation);
|
|
229
|
-
|
|
234
|
+
}
|
|
235
|
+
else if (this.isHelm() && this.toSeparator(tgtNotation)) {
|
|
230
236
|
return this.convertHelm(tgtNotation, tgtSeparator);
|
|
231
|
-
|
|
237
|
+
}
|
|
238
|
+
else {
|
|
232
239
|
throw new Error('Not supported conversion ' +
|
|
233
240
|
`from source notation '${this.notation}' to target notation '${tgtNotation}'.`);
|
|
241
|
+
}
|
|
234
242
|
}
|
|
235
243
|
constructor(col) {
|
|
236
244
|
super(col);
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"notation-converter.js","sourceRoot":"","sources":["notation-converter.ts"],"names":[],"mappings":"AAGA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAEtC,OAAO,EAAC,YAAY,EAAC,MAAM,iBAAiB,CAAC;AAG7C,OAAO,EAAC,oBAAoB,EAAC,MAAM,uBAAuB,CAAC;AAE3D,iFAAiF;AACjF,MAAM,OAAO,iBAAkB,SAAQ,YAAY;IAGjD,IAAc,QAAQ;QACpB,IAAI,IAAI,CAAC,SAAS,KAAK,IAAI;YACzB,IAAI,CAAC,SAAS,GAAG,oBAAoB,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC;QACrD,OAAO,IAAI,CAAC,SAAS,CAAC;IACxB,CAAC;IAEM,OAAO,CAAC,cAAwB,IAAa,OAAO,cAAc,iCAAmB,CAAC,CAAC,CAAC;IAExF,WAAW,CAAC,cAAwB,IAAa,OAAO,cAAc,yCAAuB,CAAC,CAAC,CAAC;IAEhG,MAAM,CAAC,cAAwB,IAAa,OAAO,cAAc,+BAAkB,CAAC,CAAC,CAAC;IAE7F;;;;;;OAMG;IACK,uBAAuB,CAAC,SAAiB,EAAE,iBAAgC,IAAI;QACrF,IAAI,cAAc,KAAK,IAAI;YACzB,cAAc,GAAG,IAAI,CAAC,gBAAgB,CAAC;QAEzC,MAAM,SAAS,GAAG,IAAI,CAAC,YAAY,uCAAqB,SAAS,CAAC,CAAC;QACnE,sDAAsD;QACtD,SAAS,CAAC,IAAI,CAAC,CAAC,GAAW,EAAE,EAAE;YAC7B,MAAM,YAAY,GAAG,IAAI,CAAC,MAAM,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC;YAC1C,MAAM,kBAAkB,GAAG,IAAI,CAAC,QAAQ,CAAC,YAAY,CAAC,CAAC;YACvD,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,kBAAkB,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;gBAClD,IAAI,kBAAkB,CAAC,CAAC,CAAC,KAAK,cAAc;oBAC1C,kBAAkB,CAAC,CAAC,CAAC,GAAG,YAAY,CAAC,sBAAsB,CAAC,SAAS,CAAC;aACzE;YACD,OAAO,kBAAkB,CAAC,IAAI,CAAC,SAAS,CAAC,CAAC;QAC5C,CAAC,CAAC,CAAC;QACH,SAAS,CAAC,MAAM,CAAC,EAAE,CAAC,IAAI,CAAC,KAAK,uCAAqB,CAAC;QACpD,OAAO,SAAS,CAAC;IACnB,CAAC;IAED;;;;;OAKG;IACK,eAAe;QACrB,MAAM,MAAM,GAAG,CAAC,IAAI,CAAC,KAAK,EAAE,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC;YACvC,CAAC,IAAI,CAAC,KAAK,EAAE,IAAI,IAAI,CAAC,gBAAgB,EAAE,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC
|
|
1
|
+
{"version":3,"file":"notation-converter.js","sourceRoot":"","sources":["notation-converter.ts"],"names":[],"mappings":"AAGA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAEtC,OAAO,EAAC,YAAY,EAAC,MAAM,iBAAiB,CAAC;AAG7C,OAAO,EAAC,oBAAoB,EAAC,MAAM,uBAAuB,CAAC;AAE3D,iFAAiF;AACjF,MAAM,OAAO,iBAAkB,SAAQ,YAAY;IAGjD,IAAc,QAAQ;QACpB,IAAI,IAAI,CAAC,SAAS,KAAK,IAAI;YACzB,IAAI,CAAC,SAAS,GAAG,oBAAoB,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC;QACrD,OAAO,IAAI,CAAC,SAAS,CAAC;IACxB,CAAC;IAEM,OAAO,CAAC,cAAwB,IAAa,OAAO,cAAc,iCAAmB,CAAC,CAAC,CAAC;IAExF,WAAW,CAAC,cAAwB,IAAa,OAAO,cAAc,yCAAuB,CAAC,CAAC,CAAC;IAEhG,MAAM,CAAC,cAAwB,IAAa,OAAO,cAAc,+BAAkB,CAAC,CAAC,CAAC;IAE7F;;;;;;OAMG;IACK,uBAAuB,CAAC,SAAiB,EAAE,iBAAgC,IAAI;QACrF,IAAI,cAAc,KAAK,IAAI;YACzB,cAAc,GAAG,IAAI,CAAC,gBAAgB,CAAC;QAEzC,MAAM,SAAS,GAAG,IAAI,CAAC,YAAY,uCAAqB,SAAS,CAAC,CAAC;QACnE,sDAAsD;QACtD,SAAS,CAAC,IAAI,CAAC,CAAC,GAAW,EAAE,EAAE;YAC7B,MAAM,YAAY,GAAG,IAAI,CAAC,MAAM,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC;YAC1C,MAAM,kBAAkB,GAAG,IAAI,CAAC,QAAQ,CAAC,YAAY,CAAC,CAAC;YACvD,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,kBAAkB,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;gBAClD,IAAI,kBAAkB,CAAC,CAAC,CAAC,KAAK,cAAc;oBAC1C,kBAAkB,CAAC,CAAC,CAAC,GAAG,YAAY,CAAC,sBAAsB,CAAC,SAAS,CAAC;aACzE;YACD,OAAO,kBAAkB,CAAC,IAAI,CAAC,SAAS,CAAC,CAAC;QAC5C,CAAC,CAAC,CAAC;QACH,SAAS,CAAC,MAAM,CAAC,EAAE,CAAC,IAAI,CAAC,KAAK,uCAAqB,CAAC;QACpD,OAAO,SAAS,CAAC;IACnB,CAAC;IAED;;;;;OAKG;IACK,eAAe;QACrB,MAAM,MAAM,GAAG,CAAC,IAAI,CAAC,KAAK,EAAE,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC;YACvC,CAAC,IAAI,CAAC,KAAK,EAAE,IAAI,IAAI,CAAC,gBAAgB,EAAE,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,WAAW,CAAC;QACpE,qCAAqC;QACrC,2DAA2D;QAE3D,4BAA4B;QAC5B,wDAAwD;QAExD,MAAM,OAAO,GAAG,OAAO,CAAC;QACxB,MAAM,WAAW,GAAG,CAAC,IAAI,CAAC,KAAK,EAAE,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC;YACzC,CAAC,IAAI,CAAC,KAAK,EAAE,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,0BAA0B;QACxD,MAAM,YAAY,GAAG,CAAC,IAAI,CAAC,KAAK,EAAE,IAAI,IAAI,CAAC,KAAK,EAAE,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,0BAA0B;QAC3F,OAAO,CAAC,MAAM,EAAE,WAAW,EAAE,YAAY,EAAE,OAAO,CAAC,CAAC;IACtD,CAAC;IAED,mDAAmD;IAC3C,mBAAmB,CACzB,aAAqB,EACrB,eAAuB,EACvB,MAAc,EACd,WAAmB,EACnB,YAAoB,EACpB,OAAe;QAEf,MAAM,YAAY,GAAG,IAAI,CAAC,QAAQ,CAAC,aAAa,CAAC,CAAC;QAClD,MAAM,gBAAgB,GAAa,YAAY,CAAC,GAAG,CAAC,CAAC,EAAU,EAAE,EAAE;YACjE,IAAI,CAAC,EAAE,IAAI,EAAE,KAAK,eAAe,EAAE;gBACjC,OAAO,YAAY,CAAC,sBAAsB,CAAC,IAAI,CAAC;aACjD;iBAAM;gBACL,OAAO,EAAE,CAAC,MAAM,IAAI,CAAC,CAAC,CAAC,CAAC,GAAG,WAAW,GAAG,EAAE,GAAG,YAAY,EAAE,CAAC,CAAC;oBAC5D,GAAG,WAAW,IAAI,EAAE,IAAI,YAAY,EAAE,CAAC;aAC1C;QACH,CAAC,CAAC,CAAC;QACH,OAAO,GAAG,MAAM,GAAG,gBAAgB,CAAC,IAAI,CAAC,GAAG,CAAC,GAAG,OAAO,EAAE,CAAC;IAC5D,CAAC;IAED;;;;;;;OAOG;IACI,mBAAmB,CACxB,aAAqB,EACrB,kBAAiC,IAAI;QAErC,IAAI,eAAe,KAAK,IAAI;YAC1B,eAAe,GAAG,IAAI,CAAC,gBAAgB,CAAC;QAC1C,MAAM,CAAC,MAAM,EAAE,WAAW,EAAE,YAAY,EAAE,OAAO,CAAC,GAAG,IAAI,CAAC,eAAe,EAAE,CAAC;QAC5E,OAAO,IAAI,CAAC,mBAAmB,CAAC,aAAa,EAAE,eAAe,EAAE,MAAM,EAAE,WAAW,EAAE,YAAY,EAAE,OAAO,CAAC,CAAC;IAC9G,CAAC;IAED;;;;;OAKG;IACK,aAAa,CAAC,kBAAiC,IAAI;QACzD,IAAI,eAAe,KAAK,IAAI;YAC1B,eAAe,GAAG,IAAI,CAAC,gBAAgB,CAAC;QAE1C,MAAM,CAAC,MAAM,EAAE,WAAW,EAAE,YAAY,EAAE,OAAO,CAAC,GAAG,IAAI,CAAC,eAAe,EAAE,CAAC;QAE5E,MAAM,SAAS,GAAG,IAAI,CAAC,YAAY,4BAAe,CAAC;QACnD,wCAAwC;QACxC,SAAS,CAAC,IAAI,CAAC,CAAC,GAAW,EAAE,EAAE;YAC7B,MAAM,aAAa,GAAG,IAAI,CAAC,MAAM,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC;YAC3C,OAAO,IAAI,CAAC,mBAAmB,CAAC,aAAa,EAAE,eAAgB,EAAE,MAAM,EAAE,WAAW,EAAE,YAAY,EAAE,OAAO,CAAC,CAAC;QAC/G,CAAC,CAAC,CAAC;QACH,SAAS,CAAC,MAAM,CAAC,EAAE,CAAC,IAAI,CAAC,KAAK,6BAAgB,CAAC;QAC/C,OAAO,SAAS,CAAC;IACnB,CAAC;IAED;;;;;OAKG;IACK,uBAAuB,CAAC,iBAAgC,IAAI;QAClE,IAAI,cAAc,KAAK,IAAI;YACzB,cAAc,GAAG,YAAY,CAAC,sBAAsB,CAAC,KAAK,CAAC;QAE7D,MAAM,SAAS,GAAG,IAAI,CAAC,YAAY,8BAAgB,CAAC;QACpD,wCAAwC;QACxC,SAAS,CAAC,IAAI,CAAC,CAAC,GAAW,EAAE,EAAE;YAC7B,MAAM,gBAAgB,GAAG,IAAI,CAAC,MAAM,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC;YAC9C,sCAAsC;YACtC,MAAM,mBAAmB,GAAG,IAAI,CAAC,QAAQ,CAAC,gBAAgB,CAAC,CAAC;YAC5D,MAAM,kBAAkB,GAAa,EAAE,CAAC;YACxC,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,mBAAmB,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;gBACnD,MAAM,IAAI,GAAG,mBAAmB,CAAC,CAAC,CAAC,CAAC;gBACpC,IAAI,IAAI,CAAC,MAAM,KAAK,CAAC,EAAE;oBACrB,kBAAkB,CAAC,IAAI,CAAC,cAAe,CAAC,CAAC;iBAC1C;qBAAM,IAAI,IAAI,CAAC,MAAM,GAAG,CAAC,EAAE;oBAC1B,wCAAwC;oBACxC,MAAM,OAAO,GAAG,GAAG,GAAG,IAAI,GAAG,GAAG,CAAC;oBACjC,kBAAkB,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC;iBAClC;qBAAM;oBACL,kBAAkB,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;iBAC/B;aACF;YACD,OAAO,kBAAkB,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QACrC,CAAC,CAAC,CAAC;QACH,SAAS,CAAC,MAAM,CAAC,EAAE,CAAC,IAAI,CAAC,KAAK,+BAAiB,CAAC;QAChD,OAAO,SAAS,CAAC;IACnB,CAAC;IAED;;;;;;;;;OASG;IACI,2BAA2B,CAChC,WAAmB,EAAE,WAAmB,EAAE,YAAqB,EAAE,YAAqB;QAEtF,IAAI,CAAC,YAAY,EAAE;YACjB,YAAY,GAAG,CAAC,IAAI,CAAC,OAAO,CAAC,WAAuB,CAAC,CAAC,CAAC,CAAC;gBACtD,YAAY,CAAC,sBAAsB,CAAC,KAAK,CAAC,CAAC;gBAC3C,YAAY,CAAC,sBAAsB,CAAC,SAAS,CAAC;SACjD;QAED,IAAI,CAAC,YAAY;YACf,YAAY,GAAG,CAAC,IAAI,CAAC,OAAO,CAAC,WAAuB,CAAC,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,SAAS,CAAC;QAE/E,MAAM,cAAc,GAAG,iBAAiB,CAAC;QACzC,MAAM,YAAY,GAAG,WAAW,CAAC,UAAU,CAAC,KAAK,CAAC,IAAI,WAAW,CAAC,UAAU,CAAC,KAAK,CAAC,CAAC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|
|
@@ -205,7 +205,7 @@ export class UnitsHandler {
|
|
|
205
205
|
throw new Error(`Notation \'${"separator" /* NOTATION.SEPARATOR */}\' requires separator value.`);
|
|
206
206
|
newColumn.setTag("separator" /* TAGS.separator */, separator);
|
|
207
207
|
}
|
|
208
|
-
newColumn.setTag(DG.TAGS.CELL_RENDERER, 'Macromolecule');
|
|
208
|
+
newColumn.setTag(DG.TAGS.CELL_RENDERER, 'Macromolecule'); // cell.renderer
|
|
209
209
|
const srcAligned = col.getTag("aligned" /* TAGS.aligned */);
|
|
210
210
|
if (srcAligned)
|
|
211
211
|
newColumn.setTag("aligned" /* TAGS.aligned */, srcAligned);
|
|
@@ -1 +1 @@
|
|
|
1
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-
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1
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+
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