npm - @datagrok-libraries/bio - Versions diffs - 5.29.4 → 5.30.0 - Mend

@datagrok-libraries/bio 5.29.4 → 5.30.0

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Files changed (14) hide show

package/package.json +1 -1
package/src/monomer-works/to-atomic-level.d.ts +5 -2
package/src/monomer-works/to-atomic-level.d.ts.map +1 -1
package/src/monomer-works/to-atomic-level.js +71 -54
package/src/monomer-works/to-atomic-level.js.map +1 -1
package/src/utils/macromolecule/consts.d.ts +2 -1
package/src/utils/macromolecule/consts.d.ts.map +1 -1
package/src/utils/macromolecule/consts.js.map +1 -1
package/src/utils/notation-converter.js +2 -2
package/src/utils/notation-converter.js.map +1 -1
package/src/utils/units-handler.d.ts +3 -0
package/src/utils/units-handler.d.ts.map +1 -1
package/src/utils/units-handler.js +45 -0
package/src/utils/units-handler.js.map +1 -1

package/package.json CHANGED Viewed

@@ -8,7 +8,7 @@
     "access": "public"
   },
   "friendlyName": "Datagrok bio library",
-  "version": "5.29.4",
+  "version": "5.30.0",
   "description": "",
   "dependencies": {
     "@datagrok-libraries/gridext": "^1.3.22",

package/src/monomer-works/to-atomic-level.d.ts CHANGED Viewed

@@ -1,7 +1,10 @@
 import * as DG from 'datagrok-api/dg';
-import { Monomer } from '../types';
+import { IMonomerLib, Monomer } from '../types';
 /** Convert Macromolecule column into Molecule column storing molfile V3000 with the help of a monomer library  */
-export declare function _toAtomicLevel(df: DG.DataFrame, macroMolCol: DG.Column<string>, monomersLibList: any[]): Promise<void>;
+export declare function _toAtomicLevel(df: DG.DataFrame, seqCol: DG.Column<string>, monomerLib: IMonomerLib): Promise<{
+    col: DG.Column | null;
+    warnings: string[];
+}>;
 /** Parse element symbols for R-groups from the HELM monomer library R-groups
  * field  */
 export declare function parseCapGroups(rGroupObjList: any[]): string[];

package/src/monomer-works/to-atomic-level.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"to-atomic-level.d.ts","sourceRoot":"","sources":["to-atomic-level.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAOtC,OAAO,EAAC,WAAW,EAAE,OAAO,EAAC,MAAM,UAAU,CAAC;AAuH9C,kHAAkH;AAClH,wBAAsB,cAAc,CAClC,EAAE,EAAE,EAAE,CAAC,SAAS,EAAE,MAAM,EAAE,EAAE,CAAC,MAAM,CAAC,MAAM,CAAC,EAAE,UAAU,EAAE,WAAW,GACnE,OAAO,CAAC;IAAE,GAAG,EAAE,EAAE,CAAC,MAAM,GAAG,IAAI,CAAC;IAAC,QAAQ,EAAE,MAAM,EAAG,CAAA;CAAE,CAAC,CAwEzD;AA0QD;YACY;AACZ,wBAAgB,cAAc,CAAC,aAAa,EAAE,GAAG,EAAE,GAAG,MAAM,EAAE,CAe7D;AAggCD,wBAAsB,2BAA2B,CAAC,eAAe,EAAE,GAAG,EAAE,GAAG,OAAO,CAAC,GAAG,CAAC,MAAM,EAAE,MAAM,CAAC,GAAG,SAAS,CAAC,CA6BlH;AAED,oFAAoF;AACpF,wBAAgB,iBAAiB,CAAC,OAAO,EAAE,OAAO,GAAG,MAAM,CAmB1D;AAID;;;;;GAKG;AACH,wBAAgB,mBAAmB,CACjC,UAAU,EAAE,MAAM,EAAE,EAAE,oDAAoD;AAC1E,qBAAqB,EAAE;IAAE,CAAC,MAAM,EAAE,MAAM,GAAG,MAAM,CAAA;CAAE,GAClD,MAAM,GAAG,IAAI,CAkBf"}

package/src/monomer-works/to-atomic-level.js CHANGED Viewed

@@ -14,6 +14,7 @@ import { HELM_CORE_FIELDS } from '../utils/const';
 import { getSplitter } from '../utils/macromolecule/utils';
 import { NotationConverter } from '../utils/notation-converter';
 import { errorToConsole } from '@datagrok-libraries/utils/src/to-console';
+import { UnitsHandler } from '../utils/units-handler';
 // constants for parsing molfile V2000
 const V2K_RGP_SHIFT = 8;
 const V2K_RGP_LINE = 'M  RGP';
@@ -33,7 +34,7 @@ const V3K_BEGIN_BOND_BLOCK = 'M  V30 BEGIN BOND\n';
 const V3K_END_BOND_BLOCK = 'M  V30 END BOND\n';
 const V3K_BOND_CONFIG = ' CFG=';
 const V3K_BEGIN_DATA_LINE = 'M  V30 ';
-const V3K_END = 'M  END\n';
+const V3K_END = 'M  END';
 const PRECISION_FACTOR = 10000; // HELMCoreLibrary has 4 significant digits after decimal point in atom coordinates
 // symbols for the corresponding monomers in HELM library
 const DEOXYRIBOSE = 'd';
@@ -43,25 +44,28 @@ const OXYGEN = 'O';
 const HYDROGEN = 'H';
 // todo: verify that all functions have return types
 /** Convert Macromolecule column into Molecule column storing molfile V3000 with the help of a monomer library  */
-export function _toAtomicLevel(df, macroMolCol, monomersLibList) {
+export function _toAtomicLevel(df, seqCol, monomerLib) {
     return __awaiter(this, void 0, void 0, function* () {
         // todo: remove this from the library
         if (DG.Func.find({ package: 'Chem', name: 'getRdKitModule' }).length === 0) {
-            grok.shell.warning('Transformation to atomic level requires package "Chem" installed.');
-            return;
+            const msg = 'Transformation to atomic level requires the package "Chem" installed.';
+            return { col: null, warnings: [msg] };
         }
-        if (macroMolCol.semType !== DG.SEMTYPE.MACROMOLECULE) {
-            grok.shell.warning(`Only the ${DG.SEMTYPE.MACROMOLECULE} columns can be converted to atomic
-      level, the chosen column has semType ${macroMolCol.semType}`);
-            return;
+        if (seqCol.semType !== DG.SEMTYPE.MACROMOLECULE) {
+            const msg = `Only the ${DG.SEMTYPE.MACROMOLECULE} columns can be converted to atomic level, ` +
+                `the chosen column has semType '${seqCol.semType}'`;
+            return { col: null, warnings: [msg] };
         }
+        let srcCol = seqCol;
+        const seqUh = new UnitsHandler(seqCol);
         // convert 'helm' to 'separator' units
-        if (macroMolCol.getTag(DG.TAGS.UNITS) === "helm" /* NOTATION.HELM */) {
-            const converter = new NotationConverter(macroMolCol);
-            const separator = '/';
-            macroMolCol = converter.convert("separator" /* NOTATION.SEPARATOR */, separator);
+        if (seqUh.isHelm()) {
+            const converter = new NotationConverter(seqCol);
+            srcCol = converter.convert("separator" /* NOTATION.SEPARATOR */, '.');
+            srcCol.name = seqCol.name; // Replace converted col name 'separator(<original>)' to '<original>';
         }
-        const alphabet = macroMolCol.getTag("alphabet" /* TAGS.alphabet */);
+        const srcUh = new UnitsHandler(srcCol);
+        const alphabet = srcUh.alphabet;
         // determine the polymer type according to HELM specifications
         let polymerType;
         // todo: an exception from dart comes before this check if the alphabet is UN
@@ -72,55 +76,67 @@ export function _toAtomicLevel(df, macroMolCol, monomersLibList) {
             polymerType = "RNA" /* HELM_POLYMER_TYPE.RNA */;
         }
         else {
-            grok.shell.warning(`Unexpected column's '${macroMolCol.name}' alphabet '${alphabet}'.`);
-            return;
+            const msg = `Unexpected column's '${srcCol.name}' alphabet '${alphabet}'.`;
+            return { col: null, warnings: [msg] };
         }
         // work in standard mode, where, as in HELMCoreLibrary:
         // - monomers with polymerType 'PEPTIDE' have monomer type 'backbone'
         // - monomers with polymerType 'RNA' have monomer type 'branch' and 'backbone'
         // - the library provides molfiles in format V2000
         const mode = 0 /* MODE.STANDARD */;
-        const monomerSequencesArray = getMonomerSequencesArray(macroMolCol);
-        const monomersDict = yield getMonomersDictFromLib(monomerSequencesArray, monomersLibList, polymerType, alphabet);
-        const columnLength = macroMolCol.length;
-        const reconstructed = new Array(columnLength);
-        for (let row = 0; row < columnLength; ++row) {
-            const monomerSeq = monomerSequencesArray[row];
-            reconstructed[row] = monomerSeqToMolfile(monomerSeq, monomersDict, alphabet, polymerType, mode);
-            // console.log(reconstructed[row]);
+        const monomerSequencesArray = getMonomerSequencesArray(srcCol);
+        const monomersDict = yield getMonomersDictFromLib(monomerSequencesArray, monomerLib, polymerType, alphabet);
+        const srcColLength = srcCol.length;
+        const molfileList = new Array(srcColLength);
+        const molfileWarningList = new Array(0);
+        for (let rowI = 0; rowI < srcColLength; ++rowI) {
+            try {
+                const monomerSeq = monomerSequencesArray[rowI];
+                molfileList[rowI] = monomerSeqToMolfile(monomerSeq, monomersDict, alphabet, polymerType, mode);
+            }
+            catch (err) {
+                const errMsg = err instanceof Error ? err.message : err.toString();
+                const msg = `Cannot get molfile of row #${rowI}: ${errMsg}.`;
+                molfileWarningList.push(msg);
+            }
         }
+        if (molfileWarningList.length > 0.05 * srcColLength)
+            throw new Error('Too many errors getting molfiles.');
         // exclude name collisions
-        const name = 'molfile(' + macroMolCol.name + ')';
-        const newColName = df.columns.getUnusedName(name);
-        const newCol = DG.Column.fromStrings(newColName, reconstructed);
-        newCol.semType = DG.SEMTYPE.MOLECULE;
-        newCol.setTag(DG.TAGS.UNITS, DG.UNITS.Molecule.MOLBLOCK);
-        df.columns.add(newCol, true);
-        yield grok.data.detectSemanticTypes(df);
+        const name = `molfile(${srcCol.name})`;
+        const resColName = df.columns.getUnusedName(name);
+        const resCol = DG.Column.fromStrings(resColName, molfileList);
+        resCol.semType = DG.SEMTYPE.MOLECULE;
+        resCol.setTag(DG.TAGS.UNITS, DG.UNITS.Molecule.MOLBLOCK);
+        return { col: resCol, warnings: molfileWarningList };
     });
 }
 /** Get a mapping of peptide symbols to HELM monomer library
  * objects with selected fields.
  */
-function getFormattedMonomerLib(monomersLibList, polymerType, alphabet) {
+function getFormattedMonomerLib(monomerLib, polymerType, alphabet) {
     const map = new Map();
-    monomersLibList.forEach((it) => {
-        if (it["polymerType" /* HELM_FIELDS.POLYMER_TYPE */] === polymerType) {
-            if (polymerType === "RNA" /* HELM_POLYMER_TYPE.RNA */ &&
-                (it["monomerType" /* HELM_FIELDS.MONOMER_TYPE */] === "Branch" /* HELM_MONOMER_TYPE.BRANCH */ ||
-                    alphabet === "DNA" /* ALPHABET.DNA */ && it["symbol" /* HELM_FIELDS.SYMBOL */] === DEOXYRIBOSE ||
-                    alphabet === "RNA" /* ALPHABET.RNA */ && it["symbol" /* HELM_FIELDS.SYMBOL */] === RIBOSE ||
-                    it["symbol" /* HELM_FIELDS.SYMBOL */] === PHOSPHATE) ||
-                polymerType === "PEPTIDE" /* HELM_POLYMER_TYPE.PEPTIDE */ &&
-                    it["monomerType" /* HELM_FIELDS.MONOMER_TYPE */] !== "Branch" /* HELM_MONOMER_TYPE.BRANCH */) {
-                const monomerObject = {};
-                HELM_CORE_FIELDS.forEach((field) => {
-                    monomerObject[field] = it[field];
-                });
-                map.set(it["symbol" /* HELM_FIELDS.SYMBOL */], monomerObject);
+    for (const monomerType of monomerLib.getTypes()) {
+        for (const monomerName of monomerLib.getMonomerNamesByType(monomerType)) {
+            const it = monomerLib.getMonomer(monomerType, monomerName);
+            if (it["polymerType" /* HELM_FIELDS.POLYMER_TYPE */] === polymerType) {
+                if (polymerType === "RNA" /* HELM_POLYMER_TYPE.RNA */ &&
+                    (it["monomerType" /* HELM_FIELDS.MONOMER_TYPE */] === "Branch" /* HELM_MONOMER_TYPE.BRANCH */ ||
+                        alphabet === "DNA" /* ALPHABET.DNA */ && it["symbol" /* HELM_FIELDS.SYMBOL */] === DEOXYRIBOSE ||
+                        alphabet === "RNA" /* ALPHABET.RNA */ && it["symbol" /* HELM_FIELDS.SYMBOL */] === RIBOSE ||
+                        it["symbol" /* HELM_FIELDS.SYMBOL */] === PHOSPHATE) ||
+                    polymerType === "PEPTIDE" /* HELM_POLYMER_TYPE.PEPTIDE */ &&
+                        it["monomerType" /* HELM_FIELDS.MONOMER_TYPE */] !== "Branch" /* HELM_MONOMER_TYPE.BRANCH */) {
+                    const monomerObject = {};
+                    HELM_CORE_FIELDS.forEach((field) => {
+                        //@ts-ignore
+                        monomerObject[field] = it[field];
+                    });
+                    map.set(it["symbol" /* HELM_FIELDS.SYMBOL */], monomerObject);
+                }
             }
         }
-    });
+    }
     return map;
 }
 /** Get jagged array of monomer symbols for the dataframe  */
@@ -134,17 +150,17 @@ function getMonomerSequencesArray(macroMolCol) {
     for (let row = 0; row < columnLength; ++row) {
         const macroMolecule = macroMolCol.get(row);
         // todo: handle the exception case when macroMolecule is null
-        result[row] = macroMolecule ? splitterFunc(macroMolecule) : [];
+        result[row] = macroMolecule ? splitterFunc(macroMolecule).filter((monomerCode) => monomerCode !== '') : [];
     }
     return result;
 }
 /** Get a mapping of monomer symbols to MolGraph objects. Notice, the
  * transformation from molfile V2000 to V3000 takes place,
  * with the help of async function call from Chem (RdKit module) */
-function getMonomersDictFromLib(monomerSequencesArray, monomersLibList, polymerType, alphabet) {
+function getMonomersDictFromLib(monomerSequencesArray, monomerLib, polymerType, alphabet) {
     return __awaiter(this, void 0, void 0, function* () {
         // todo: exception - no gaps, no empty string monomers
-        const formattedMonomerLib = getFormattedMonomerLib(monomersLibList, polymerType, alphabet);
+        const formattedMonomerLib = getFormattedMonomerLib(monomerLib, polymerType, alphabet);
         const monomersDict = new Map();
         const moduleRdkit = yield grok.functions.call('Chem:getRdKitModule');
         const pointerToBranchAngle = {
@@ -158,8 +174,8 @@ function getMonomersDictFromLib(monomerSequencesArray, monomersLibList, polymerT
             for (const sym of symbols)
                 addMonomerToDict(monomersDict, sym, formattedMonomerLib, moduleRdkit, polymerType, pointerToBranchAngle);
         }
-        for (let row = 0; row < monomerSequencesArray.length; ++row) {
-            const monomerSeq = monomerSequencesArray[row];
+        for (let rowI = 0; rowI < monomerSequencesArray.length; ++rowI) {
+            const monomerSeq = monomerSequencesArray[rowI];
             for (const sym of monomerSeq) {
                 if (sym === '')
                     continue; // Skip gap/empty monomer for MSA
@@ -169,7 +185,7 @@ function getMonomersDictFromLib(monomerSequencesArray, monomersLibList, polymerT
                 catch (err) {
                     const errTxt = errorToConsole(err);
                     console.error(`bio lib: getMonomersDictFromLib() sym='${sym}', error:\n` + errTxt);
-                    const errMsg = `can't get monomer '${sym}' from library: ${errTxt}`; // Text for Datagrok error baloon
+                    const errMsg = `Сan't get monomer '${sym}' from library: ${errTxt}`; // Text for Datagrok error baloon
                     throw new Error(errMsg);
                 }
             }
@@ -865,9 +881,10 @@ function shiftCoordinates(molGraph, xShift, yShift) {
 }
 /** Translate a sequence of monomer symbols into Molfile V3000 */
 function monomerSeqToMolfile(monomerSeq, monomersDict, alphabet, polymerType, mode) {
-    if (monomerSeq.length === 0)
+    if (monomerSeq.length === 0) {
+        // throw new Error('monomerSeq is empty');
         return '';
-    // throw new Error('monomerSeq is empty');
+    }
     // define atom and bond counts, taking into account the bond type
     const getAtomAndBondCounts = (mode === 0 /* MODE.STANDARD */) ?
         getResultingAtomBondCounts : getResultingAtomBondCountsST;

package/src/monomer-works/to-atomic-level.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/src/utils/macromolecule/consts.d.ts CHANGED Viewed

@@ -21,7 +21,8 @@ export declare const enum TAGS {
     alphabet = "alphabet",
     alphabetSize = ".alphabetSize",
     alphabetIsMultichar = ".alphabetIsMultichar",
-    separator = "separator"
+    separator = "separator",
+    isHelmCompatible = ".isHelmCompatible"
 }
 export declare const monomerRe: RegExp;
 export declare const Alphabets: {

package/src/utils/macromolecule/consts.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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package/src/utils/macromolecule/consts.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/src/utils/notation-converter.js CHANGED Viewed

@@ -43,12 +43,12 @@ export class NotationConverter extends UnitsHandler {
      */
     getHelmWrappers() {
         const prefix = (this.isDna()) ? 'DNA1{' :
-            (this.isRna()) ? 'RNA1{' :
+            (this.isRna() || this.isHelmCompatible()) ? 'RNA1{' :
                 (this.isPeptide()) ? 'PEPTIDE1{' :
                     'Unknown'; // this case should be handled as exceptional
         if (prefix === 'Unknown')
             throw new Error('Neither peptide, nor nucleotide');
-        const postfix = '}$$$';
+        const postfix = '}$$$$';
         const leftWrapper = (this.isDna()) ? 'D(' :
             (this.isRna()) ? 'R(' : ''; // no wrapper for peptides
         const rightWrapper = (this.isDna() || this.isRna()) ? ')P' : ''; // no wrapper for peptides

package/src/utils/notation-converter.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/src/utils/units-handler.d.ts CHANGED Viewed

@@ -27,6 +27,7 @@ export declare class UnitsHandler {
     get aligned(): string;
     /** Alphabet name (upper case) */
     get alphabet(): string;
+    protected get helmCompatible(): string | undefined;
     getAlphabetSize(): number;
     getAlphabetIsMultichar(): boolean;
     isFasta(): boolean;
@@ -36,6 +37,7 @@ export declare class UnitsHandler {
     isDna(): boolean;
     isPeptide(): boolean;
     isMsa(): boolean;
+    isHelmCompatible(): boolean;
     /** Associate notation types with the corresponding units */
     /**
      * @return {NOTATION}     Notation associated with the units type
@@ -76,6 +78,7 @@ export declare class UnitsHandler {
     static getNewColumnFromParams(len: number, name: string, units: string): DG.Column;
     getDistanceFunctionName(): MmDistanceFunctionsNames;
     getDistanceFunction(): mmDistanceFunctionType;
+    checkHelmCompatibility(): Promise<boolean>;
     constructor(col: DG.Column);
 }
 //# sourceMappingURL=units-handler.d.ts.map

package/src/utils/units-handler.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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package/src/utils/units-handler.js CHANGED Viewed

@@ -1,7 +1,17 @@
+var __awaiter = (this && this.__awaiter) || function (thisArg, _arguments, P, generator) {
+    function adopt(value) { return value instanceof P ? value : new P(function (resolve) { resolve(value); }); }
+    return new (P || (P = Promise))(function (resolve, reject) {
+        function fulfilled(value) { try { step(generator.next(value)); } catch (e) { reject(e); } }
+        function rejected(value) { try { step(generator["throw"](value)); } catch (e) { reject(e); } }
+        function step(result) { result.done ? resolve(result.value) : adopt(result.value).then(fulfilled, rejected); }
+        step((generator = generator.apply(thisArg, _arguments || [])).next());
+    });
+};
 import * as DG from 'datagrok-api/dg';
 import { candidateAlphabets } from './macromolecule/consts';
 import { detectAlphabet, getSplitterForColumn, getSplitterWithSeparator, getStats, splitterAsFasta, splitterAsHelm } from './macromolecule/utils';
 import { mmDistanceFunctions, MmDistanceFunctionsNames } from '@datagrok-libraries/ml/src/macromolecule-distance-functions';
+import { getMonomerLibHelper } from '../monomer-works/monomer-utils';
 /** Class for handling notation units in Macromolecule columns */
 export class UnitsHandler {
     static setUnitsToFastaColumn(col) {
@@ -72,6 +82,9 @@ export class UnitsHandler {
             throw new Error('Tag alphabet not set');
         return alphabet;
     }
+    get helmCompatible() {
+        return this.column.getTag(".isHelmCompatible" /* TAGS.isHelmCompatible */);
+    }
     getAlphabetSize() {
         if (this.notation == "helm" /* NOTATION.HELM */ || this.alphabet == "UN" /* ALPHABET.UN */) {
             const alphabetSizeStr = this.column.getTag(".alphabetSize" /* TAGS.alphabetSize */);
@@ -117,6 +130,7 @@ export class UnitsHandler {
     isDna() { return this.alphabet === "DNA" /* ALPHABET.DNA */; }
     isPeptide() { return this.alphabet === "PT" /* ALPHABET.PT */; }
     isMsa() { return this.aligned ? this.aligned.toUpperCase().includes('MSA') : false; }
+    isHelmCompatible() { return this.helmCompatible === 'true'; }
     /** Associate notation types with the corresponding units */
     /**
      * @return {NOTATION}     Notation associated with the units type
@@ -237,6 +251,37 @@ export class UnitsHandler {
     getDistanceFunction() {
         return mmDistanceFunctions[this.getDistanceFunctionName()]();
     }
+    // checks if the separator notation is compatible with helm library
+    checkHelmCompatibility() {
+        return __awaiter(this, void 0, void 0, function* () {
+            // check first for the column tag to avoid extra processing
+            if (this.column.tags.has(".isHelmCompatible" /* TAGS.isHelmCompatible */))
+                return this.column.getTag(".isHelmCompatible" /* TAGS.isHelmCompatible */) === 'true';
+            // get the monolmer lib and check against the column
+            const monomerLibHelper = yield getMonomerLibHelper();
+            const bioLib = monomerLibHelper.getBioLib();
+            // retrieve peptides
+            const peptides = bioLib.getMonomerNamesByType("PEPTIDE" /* HELM_POLYMER_TYPE.PEPTIDE */.toString());
+            // convert the peptides list to a set for faster lookup
+            const peptidesSet = new Set(peptides);
+            // get splitter for given separator and check if all monomers are in the lib
+            const splitterFunc = getSplitterWithSeparator(this.separator);
+            // iterate over the columns, split them and check if all monomers are in the lib
+            //TODO maybe add missing threshhold so that if there are not too many missing monomers
+            // the column is still considered helm compatible
+            for (const row of this.column.categories) {
+                const monomers = splitterFunc(row);
+                for (const monomer of monomers) {
+                    if (!peptidesSet.has(monomer)) {
+                        this.column.setTag(".isHelmCompatible" /* TAGS.isHelmCompatible */, 'false');
+                        return false;
+                    }
+                }
+            }
+            this.column.setTag(".isHelmCompatible" /* TAGS.isHelmCompatible */, 'true');
+            return true;
+        });
+    }
     constructor(col) {
         this._column = col;
         const units = this._column.getTag(DG.TAGS.UNITS);

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