@datagrok-libraries/bio 5.29.0 → 5.29.2

package/.eslintrc.json

@@ -15,38 +15,26 @@
     "@typescript-eslint"
   ],
   "rules": {
-    "indent": [
-      "error",
-      2
-    ],
-    "max-len": [
-      "error",
-      120
-    ],
-    "no-unused-vars": "warn",
+    "indent": ["error", 2, {"SwitchCase": 1}],
+    "max-len": ["error", 120],
+    "no-unused-vars": "off",
+    "@typescript-eslint/no-unused-vars": "warn",
     "require-jsdoc": "off",
     "valid-jsdoc": "off",
     "spaced-comment": "off",
     "linebreak-style": "off",
-    "curly": [
-      "error",
-      "multi-or-nest",
-      "consistent"
-    ],
-    "brace-style": [
+    "curly": ["error", "multi-or-nest", "consistent"],
+    "brace-style": ["error", "1tbs", {"allowSingleLine": true}],
+    "block-spacing": [2, "always"],
+    "comma-dangle": [
       "error",
-      "1tbs",
       {
-        "allowSingleLine": true
-      }
-    ],
-    "block-spacing": [2, "always"],
-    "comma-dangle": ["error", {
         "arrays": "only-multiline",
         "functions": "never",
         "objects": "only-multiline",
         "imports": "only-multiline"
-    }],
+      }
+    ],
     "guard-for-in": "off"
   }
 }

package/package.json

@@ -8,7 +8,7 @@
     "access": "public"
   },
   "friendlyName": "Datagrok bio library",
-  "version": "5.29.0",
+  "version": "5.29.2",
   "description": "",
   "dependencies": {
     "@datagrok-libraries/gridext": "^1.3.22",
@@ -17,6 +17,7 @@
     "cash-dom": "latest",
     "datagrok-api": "^1.10.2",
     "dayjs": "latest",
+    "fastest-levenshtein": "^1.0.16",
     "mjolnir.js": "^2.7.0",
     "rxjs": "^6.5.5",
     "wu": "latest"
@@ -35,8 +36,8 @@
     "link-api": "npm link datagrok-api",
     "link-utils": "npm link @datagrok-libraries/utils",
     "link-all": "npm link datagrok-api @datagrok-libraries/utils @datagrok-libraries/gridext",
-    "build-bio": "tsc",
-    "build": "tsc",
+    "build-bio": "git clean -f -X -d ./src && tsc",
+    "build": "git clean -f -X -d ./src && tsc",
     "lint": "eslint \"./src/**/*.ts\"",
     "lint-fix": "eslint \"./src/**/*.ts\" --fix"
   }

package/setup-unlink-clean.cmd

@@ -0,0 +1,14 @@
+set package_dir=%cd%
+
+set dirs=^
+\..\..\js-api\ ^
+\..\..\libraries\utils\ ^
+\..\..\libraries\gridext\ ^
+\
+
+call npm uninstall -g datagrok-api @datagrok-libraries/utils @datagrok-libraries/gridext
+
+for %%p in (%dirs%) do cd %package_dir%\%%p & rmdir /s /q node_modules
+for %%p in (%dirs%) do cd %package_dir%\%%p & rmdir /s /q dist
+
+rem for %%p in (%dirs%) do cd %package_dir%\%%p & del "package-lock.json"

package/src/distance-functions/hamming.d.ts

@@ -0,0 +1,3 @@
+import { mmDistanceFunctionType } from './types';
+export declare function hamming(): mmDistanceFunctionType;
+//# sourceMappingURL=hamming.d.ts.map

package/src/distance-functions/hamming.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"hamming.d.ts","sourceRoot":"","sources":["hamming.ts"],"names":[],"mappings":"AAAA,OAAO,EAAC,sBAAsB,EAAC,MAAM,SAAS,CAAC;AAE/C,wBAAgB,OAAO,IAAI,sBAAsB,CAehD"}

package/src/distance-functions/hamming.js

@@ -0,0 +1,16 @@
+export function hamming() {
+    return (seq1, seq2) => {
+        // hamming distance should only be used with same size strings,
+        // but still, lets add a check and if they are not same length add the difference to the result
+        let diff = 0;
+        if (seq1.length !== seq2.length)
+            diff = Math.abs(seq1.length - seq2.length);
+        let result = 0;
+        for (let i = 0; i < Math.min(seq1.length, seq2.length); i++) {
+            if (seq1[i] !== seq2[i])
+                result++;
+        }
+        return result + diff;
+    };
+}
+//# sourceMappingURL=hamming.js.map

package/src/distance-functions/hamming.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"hamming.js","sourceRoot":"","sources":["hamming.ts"],"names":[],"mappings":"AAEA,MAAM,UAAU,OAAO;IACrB,OAAO,CAAC,IAAY,EAAE,IAAY,EAAE,EAAE;QACpC,+DAA+D;QAC/D,+FAA+F;QAC/F,IAAI,IAAI,GAAG,CAAC,CAAC;QACb,IAAI,IAAI,CAAC,MAAM,KAAK,IAAI,CAAC,MAAM;YAC7B,IAAI,GAAG,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,MAAM,GAAG,IAAI,CAAC,MAAM,CAAC,CAAC;QAE7C,IAAI,MAAM,GAAG,CAAC,CAAC;QACf,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,MAAM,EAAE,IAAI,CAAC,MAAM,CAAC,EAAE,CAAC,EAAE,EAAE;YAC3D,IAAI,IAAI,CAAC,CAAC,CAAC,KAAK,IAAI,CAAC,CAAC,CAAC;gBACrB,MAAM,EAAE,CAAC;SACZ;QACD,OAAO,MAAM,GAAG,IAAI,CAAC;IACvB,CAAC,CAAC;AACJ,CAAC"}

package/src/distance-functions/index.d.ts

@@ -0,0 +1,2 @@
+export { mmDistanceFunctionsNames, mmDistanceFunctions } from './macromolecule-distance-functions';
+//# sourceMappingURL=index.d.ts.map

package/src/distance-functions/index.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAC,wBAAwB,EAAE,mBAAmB,EAAC,MAAM,oCAAoC,CAAC"}

package/src/distance-functions/index.js

@@ -0,0 +1,2 @@
+export { mmDistanceFunctionsNames, mmDistanceFunctions } from './macromolecule-distance-functions';
+//# sourceMappingURL=index.js.map

package/src/distance-functions/index.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.js","sourceRoot":"","sources":["index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAC,wBAAwB,EAAE,mBAAmB,EAAC,MAAM,oCAAoC,CAAC"}

package/src/distance-functions/levenstein.d.ts

@@ -0,0 +1,3 @@
+import { mmDistanceFunctionType } from './types';
+export declare function levenstein(): mmDistanceFunctionType;
+//# sourceMappingURL=levenstein.d.ts.map

package/src/distance-functions/levenstein.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"levenstein.d.ts","sourceRoot":"","sources":["levenstein.ts"],"names":[],"mappings":"AACA,OAAO,EAAC,sBAAsB,EAAC,MAAM,SAAS,CAAC;AAE/C,wBAAgB,UAAU,IAAI,sBAAsB,CAInD"}

package/src/distance-functions/levenstein.js

@@ -0,0 +1,7 @@
+import { distance } from 'fastest-levenshtein';
+export function levenstein() {
+    return (seq1, seq2) => {
+        return distance(seq1, seq2);
+    };
+}
+//# sourceMappingURL=levenstein.js.map

package/src/distance-functions/levenstein.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"levenstein.js","sourceRoot":"","sources":["levenstein.ts"],"names":[],"mappings":"AAAA,OAAO,EAAC,QAAQ,EAAC,MAAM,qBAAqB,CAAC;AAG7C,MAAM,UAAU,UAAU;IACxB,OAAO,CAAC,IAAY,EAAE,IAAY,EAAE,EAAE;QACpC,OAAO,QAAQ,CAAC,IAAI,EAAE,IAAI,CAAC,CAAC;IAC9B,CAAC,CAAC;AACJ,CAAC"}

package/src/distance-functions/macromolecule-distance-functions.d.ts

@@ -0,0 +1,13 @@
+import { mmDistanceFunctionType } from './types';
+/** Enum containing currently supported macromolecule distance functions
+ * Hamming distance will be used if the sequences are already aligned
+ * Needleman distance will be used for protein sequences with known BLOSUM62 matrix
+ * Levenshtein distance will be used for nucleotide sequences as for them substitution matrix is same as identity matrix
+ */
+export declare enum mmDistanceFunctionsNames {
+    HAMMING = "Hamming",
+    LEVENSHTEIN = "Levenshtein",
+    NEEDLEMANN_WUNSCH = "Needlemann-Wunsch"
+}
+export declare const mmDistanceFunctions: Record<mmDistanceFunctionsNames, (value?: any) => mmDistanceFunctionType>;
+//# sourceMappingURL=macromolecule-distance-functions.d.ts.map

package/src/distance-functions/macromolecule-distance-functions.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"macromolecule-distance-functions.d.ts","sourceRoot":"","sources":["macromolecule-distance-functions.ts"],"names":[],"mappings":"AAGA,OAAO,EAAC,sBAAsB,EAAC,MAAM,SAAS,CAAC;AAE/C;;;;GAIG;AACH,oBAAY,wBAAwB;IAChC,OAAO,YAAY;IACnB,WAAW,gBAAgB;IAC3B,iBAAiB,sBAAsB;CAC1C;AAED,eAAO,MAAM,mBAAmB,EAAE,MAAM,CAAC,wBAAwB,EAAE,CAAC,KAAK,CAAC,EAAE,GAAG,KAAK,sBAAsB,CAIzG,CAAC"}

package/src/distance-functions/macromolecule-distance-functions.js

@@ -0,0 +1,21 @@
+import { hamming } from './hamming';
+import { levenstein } from './levenstein';
+import { needlemanWunch } from './needleman-wunsch';
+/** Enum containing currently supported macromolecule distance functions
+ * Hamming distance will be used if the sequences are already aligned
+ * Needleman distance will be used for protein sequences with known BLOSUM62 matrix
+ * Levenshtein distance will be used for nucleotide sequences as for them substitution matrix is same as identity matrix
+ */
+export var mmDistanceFunctionsNames;
+(function (mmDistanceFunctionsNames) {
+    mmDistanceFunctionsNames["HAMMING"] = "Hamming";
+    mmDistanceFunctionsNames["LEVENSHTEIN"] = "Levenshtein";
+    mmDistanceFunctionsNames["NEEDLEMANN_WUNSCH"] = "Needlemann-Wunsch";
+})(mmDistanceFunctionsNames || (mmDistanceFunctionsNames = {}));
+;
+export const mmDistanceFunctions = {
+    [mmDistanceFunctionsNames.HAMMING]: hamming,
+    [mmDistanceFunctionsNames.LEVENSHTEIN]: levenstein,
+    [mmDistanceFunctionsNames.NEEDLEMANN_WUNSCH]: needlemanWunch
+};
+//# sourceMappingURL=macromolecule-distance-functions.js.map

package/src/distance-functions/macromolecule-distance-functions.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"macromolecule-distance-functions.js","sourceRoot":"","sources":["macromolecule-distance-functions.ts"],"names":[],"mappings":"AAAA,OAAO,EAAC,OAAO,EAAC,MAAM,WAAW,CAAC;AAClC,OAAO,EAAC,UAAU,EAAC,MAAM,cAAc,CAAC;AACxC,OAAO,EAAC,cAAc,EAAC,MAAM,oBAAoB,CAAC;AAGlD;;;;GAIG;AACH,MAAM,CAAN,IAAY,wBAIX;AAJD,WAAY,wBAAwB;IAChC,+CAAmB,CAAA;IACnB,uDAA2B,CAAA;IAC3B,mEAAuC,CAAA;AAC3C,CAAC,EAJW,wBAAwB,KAAxB,wBAAwB,QAInC;AAAA,CAAC;AAEF,MAAM,CAAC,MAAM,mBAAmB,GAA8E;IAC5G,CAAC,wBAAwB,CAAC,OAAO,CAAC,EAAE,OAAO;IAC3C,CAAC,wBAAwB,CAAC,WAAW,CAAC,EAAE,UAAU;IAClD,CAAC,wBAAwB,CAAC,iBAAiB,CAAC,EAAE,cAAc;CAC7D,CAAC"}

package/src/distance-functions/needleman-wunsch.d.ts

@@ -0,0 +1,13 @@
+import { mmDistanceFunctionType } from './types';
+interface needlemanWunchArgs {
+    gapOpen: number;
+    gapExtend: number;
+    scoringMatrix: number[][];
+    alphabetIndexes: {
+        [id: string]: number;
+    };
+}
+/** Returns a function that calculates the distance between two sequences based on gap penalty and matrix */
+export declare function needlemanWunch(args: Partial<needlemanWunchArgs>): mmDistanceFunctionType;
+export {};
+//# sourceMappingURL=needleman-wunsch.d.ts.map

package/src/distance-functions/needleman-wunsch.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"needleman-wunsch.d.ts","sourceRoot":"","sources":["needleman-wunsch.ts"],"names":[],"mappings":"AAAA,OAAO,EAAC,sBAAsB,EAAC,MAAM,SAAS,CAAC;AAoC/C,UAAU,kBAAkB;IAC1B,OAAO,EAAE,MAAM,CAAC;IAChB,SAAS,EAAE,MAAM,CAAC;IAClB,aAAa,EAAE,MAAM,EAAE,EAAE,CAAC;IAC1B,eAAe,EAAE;QAAC,CAAC,EAAE,EAAC,MAAM,GAAE,MAAM,CAAA;KAAC,CAAC;CACvC;AASD,4GAA4G;AAC5G,wBAAgB,cAAc,CAAC,IAAI,EAAE,OAAO,CAAC,kBAAkB,CAAC,GAAG,sBAAsB,CAqDxF"}

package/src/distance-functions/needleman-wunsch.js

@@ -0,0 +1,90 @@
+// Blosum 62 matrix for protein sequences
+const BLOSUM62 = [[4, -1, -2, -2, 0, -1, -1, 0, -2, -1, -1, -1, -1, -2, -1, 1, 0, -3, -2, 0, -2, -1, 0, -4],
+    [-1, 5, 0, -2, -3, 1, 0, -2, 0, -3, -2, 2, -1, -3, -2, -1, -1, -3, -2, -3, -1, 0, -1, -4],
+    [-2, 0, 6, 1, -3, 0, 0, 0, 1, -3, -3, 0, -2, -3, -2, 1, 0, -4, -2, -3, 3, 0, -1, -4],
+    [-2, -2, 1, 6, -3, 0, 2, -1, -1, -3, -4, -1, -3, -3, -1, 0, -1, -4, -3, -3, 4, 1, -1, -4],
+    [0, -3, -3, -3, 9, -3, -4, -3, -3, -1, -1, -3, -1, -2, -3, -1, -1, -2, -2, -1, -3, -3, -2, -4],
+    [-1, 1, 0, 0, -3, 5, 2, -2, 0, -3, -2, 1, 0, -3, -1, 0, -1, -2, -1, -2, 0, 3, -1, -4],
+    [-1, 0, 0, 2, -4, 2, 5, -2, 0, -3, -3, 1, -2, -3, -1, 0, -1, -3, -2, -2, 1, 4, -1, -4],
+    [0, -2, 0, -1, -3, -2, -2, 6, -2, -4, -4, -2, -3, -3, -2, 0, -2, -2, -3, -3, -1, -2, -1, -4],
+    [-2, 0, 1, -1, -3, 0, 0, -2, 8, -3, -3, -1, -2, -1, -2, -1, -2, -2, 2, -3, 0, 0, -1, -4],
+    [-1, -3, -3, -3, -1, -3, -3, -4, -3, 4, 2, -3, 1, 0, -3, -2, -1, -3, -1, 3, -3, -3, -1, -4],
+    [-1, -2, -3, -4, -1, -2, -3, -4, -3, 2, 4, -2, 2, 0, -3, -2, -1, -2, -1, 1, -4, -3, -1, -4],
+    [-1, 2, 0, -1, -3, 1, 1, -2, -1, -3, -2, 5, -1, -3, -1, 0, -1, -3, -2, -2, 0, 1, -1, -4],
+    [-1, -1, -2, -3, -1, 0, -2, -3, -2, 1, 2, -1, 5, 0, -2, -1, -1, -1, -1, 1, -3, -1, -1, -4],
+    [-2, -3, -3, -3, -2, -3, -3, -3, -1, 0, 0, -3, 0, 6, -4, -2, -2, 1, 3, -1, -3, -3, -1, -4],
+    [-1, -2, -2, -1, -3, -1, -1, -2, -2, -3, -3, -1, -2, -4, 7, -1, -1, -4, -3, -2, -2, -1, -2, -4],
+    [1, -1, 1, 0, -1, 0, 0, 0, -1, -2, -2, 0, -1, -2, -1, 4, 1, -3, -2, -2, 0, 0, 0, -4],
+    [0, -1, 0, -1, -1, -1, -1, -2, -2, -1, -1, -1, -1, -2, -1, 1, 5, -2, -2, 0, -1, -1, 0, -4],
+    [-3, -3, -4, -4, -2, -2, -3, -2, -2, -3, -2, -3, -1, 1, -4, -3, -2, 11, 2, -3, -4, -3, -2, -4],
+    [-2, -2, -2, -3, -2, -1, -2, -3, 2, -1, -1, -2, -1, 3, -3, -2, -2, 2, 7, -1, -3, -2, -1, -4],
+    [0, -3, -3, -3, -1, -2, -2, -3, -3, 3, 1, -2, 1, -1, -2, -2, 0, -3, -1, 4, -3, -2, -1, -4],
+    [-2, -1, 3, 4, -3, 0, 1, -1, 0, -3, -4, 0, -3, -3, -2, 0, -1, -4, -3, -3, 4, 1, -1, -4],
+    [-1, 0, 0, 1, -3, 3, 4, -2, 0, -3, -3, 1, -1, -3, -1, 0, -1, -3, -2, -2, 1, 4, -1, -4],
+    [0, -1, -1, -1, -2, -1, -1, -1, -1, -1, -1, -1, -1, -1, -2, 0, 0, -2, -1, -1, -1, -1, -1, -4],
+    [-4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, 1]];
+// Protein indexes for BLOSUM matrix
+const ProtIndexes = {
+    'A': 0, 'R': 1, 'N': 2, 'D': 3, 'C': 4, 'Q': 5, 'E': 6, 'G': 7, 'H': 8,
+    'I': 9, 'L': 10, 'K': 11, 'M': 12, 'F': 13, 'P': 14, 'S': 15, 'T': 16,
+    'W': 17, 'Y': 18, 'V': 19, 'B': 20, 'Z': 21, 'X': 22, '*': 23
+};
+const defaultArgs = {
+    gapOpen: 8,
+    gapExtend: 2,
+    scoringMatrix: BLOSUM62,
+    alphabetIndexes: ProtIndexes
+};
+/** Returns a function that calculates the distance between two sequences based on gap penalty and matrix */
+export function needlemanWunch(args) {
+    return (seq1, seq2) => {
+        const { gapOpen, gapExtend, scoringMatrix, alphabetIndexes } = Object.assign(Object.assign({}, defaultArgs), args);
+        // As we don't need traceback, no need to store the whole matrix
+        // Intead, we will store only the last two rows
+        const matrix = [
+            new Array(seq1.length + 1).fill(0),
+            new Array(seq1.length + 1).fill(0)
+        ];
+        // similarly, we need to keep track of what operation led to the current cell
+        // i.e. whether we came from the left, top or diagonal to assign gap open/gap extend penalty
+        const verticalGaps = new Array(seq1.length + 1).fill(false);
+        const horizontalGaps = new Array(seq1.length + 1).fill(false);
+        //variables to keep track which row we are in
+        // they will swap places on each iteration
+        let prevRow = 0;
+        let currRow = 1;
+        // Initialize first row
+        for (let i = 0; i < seq1.length + 1; i++)
+            matrix[0][i] = -gapOpen - i * gapExtend;
+        // Calculate the rest of the matrix
+        for (let i = 1; i < seq2.length + 1; i++) {
+            matrix[currRow][0] = -gapOpen - (i - 1) * gapExtend;
+            for (let j = 1; j < seq1.length + 1; j++) {
+                const diagonal = matrix[prevRow][j - 1] + scoringMatrix[alphabetIndexes[seq1[j - 1]]][alphabetIndexes[seq2[i - 1]]];
+                const top = matrix[prevRow][j] - (verticalGaps[j] ? gapExtend : gapOpen);
+                const left = matrix[currRow][j - 1] - (horizontalGaps[j - 1] ? gapExtend : gapOpen);
+                matrix[currRow][j] = Math.max(diagonal, left, top);
+                // update gap arrays
+                if (matrix[currRow][j] === diagonal) {
+                    verticalGaps[j] = false;
+                    horizontalGaps[j] = false;
+                }
+                else if (matrix[currRow][j] === left) {
+                    verticalGaps[j] = false;
+                    horizontalGaps[j] = true;
+                }
+                else {
+                    verticalGaps[j] = true;
+                    horizontalGaps[j] = false;
+                }
+            }
+            // Swap rows
+            prevRow = currRow;
+            currRow = (currRow + 1) % 2;
+        }
+        // as the matrix is the similarity matrix, but we are interested in distance,
+        // we need to invert the result
+        return -matrix[prevRow][seq1.length];
+    };
+}
+//# sourceMappingURL=needleman-wunsch.js.map

package/src/distance-functions/needleman-wunsch.js.map

@@ -0,0 +1 @@
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package/src/distance-functions/types.d.ts

@@ -0,0 +1,2 @@
+export type mmDistanceFunctionType = (seq1: string, seq2: string) => number;
+//# sourceMappingURL=types.d.ts.map

package/src/distance-functions/types.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"types.d.ts","sourceRoot":"","sources":["types.ts"],"names":[],"mappings":"AAAA,MAAM,MAAM,sBAAsB,GAAG,CAAC,IAAI,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,KAAK,MAAM,CAAC"}

package/src/distance-functions/types.js

@@ -0,0 +1,2 @@
+export {};
+//# sourceMappingURL=types.js.map

package/src/distance-functions/types.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"types.js","sourceRoot":"","sources":["types.ts"],"names":[],"mappings":""}

package/src/monomer-works/monomer-utils.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"monomer-utils.d.ts","sourceRoot":"","sources":["monomer-utils.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAOtC,OAAO,EAAC,WAAW,EAAU,MAAM,gBAAgB,CAAC;AAMpD,eAAO,MAAM,mBAAmB,UAAyE,CAAC;AAE1G,wBAAgB,cAAc,CAAC,GAAG,EAAE,EAAE,CAAC,MAAM,GAAG,EAAE,CAAC,MAAM,GAAG,IAAI,CAwB/D;AAED,wBAAgB,kBAAkB,CAAC,GAAG,EAAE,EAAE,CAAC,MAAM,EAAE,iBAAiB,EAAE,GAAG,EAAE,GAAG,GAAG,EAAE,EAAE,GAAG,IAAI,CAuB3F;AAED,wBAAgB,wBAAwB,CAAC,IAAI,EAAE,EAAE,CAAC,IAAI,EAAE,iBAAiB,EAAE,GAAG,EAAE,GAAG,GAAG,EAAE,EAAE,GAAG,IAAI,CAoBhG;AAED,wBAAgB,qBAAqB,CAAC,GAAG,EAAE,GAAG,EAAE,GAAG;IAAE,CAAC,GAAG,EAAE,MAAM,GAAG,MAAM,GAAG,GAAG,CAAA;CAAE,CAYjF;AAED,wBAAgB,2BAA2B,CAAC,KAAK,EAAE,EAAE,CAAC,SAAS,GAAG,GAAG,CA8BpE;AAED,MAAM,WAAW,iBAAiB;IAChC,gCAAgC;IAChC,SAAS,IAAI,WAAW,CAAC;IAEzB;;OAEG;IACH,aAAa,CAAC,MAAM,CAAC,EAAE,OAAO,GAAG,OAAO,CAAC,IAAI,CAAC,CAAC;IAE/C,6DAA6D;IAC7D,WAAW,CAAC,IAAI,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,OAAO,CAAC,WAAW,CAAC,CAAC;CACnE;AAED,wBAAsB,mBAAmB,IAAI,OAAO,CAAC,iBAAiB,CAAC,CAOtE"}

package/src/monomer-works/monomer-utils.js

@@ -11,7 +11,7 @@ var __awaiter = (this && this.__awaiter) || function (thisArg, _arguments, P, ge
 import * as DG from 'datagrok-api/dg';
 import * as grok from 'datagrok-api/grok';
 import { HELM_CORE_FIELDS, jsonSdfMonomerLibDict, MONOMER_ENCODE_MAX, MONOMER_ENCODE_MIN, SDF_MONOMER_NAME } from '../utils/const';
-import { getSplitter } from '../utils/macromolecule';
+import { getSplitter } from '../utils/macromolecule/utils';
 export const expectedMonomerData = ['symbol', 'name', 'molfile', 'rgroups', 'polymerType', 'monomerType'];
 export function encodeMonomers(col) {
     let encodeSymbol = MONOMER_ENCODE_MIN;

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package/src/monomer-works/to-atomic-level.d.ts.map

@@ -1 +1 @@
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package/src/monomer-works/to-atomic-level.js

@@ -11,8 +11,7 @@ var __awaiter = (this && this.__awaiter) || function (thisArg, _arguments, P, ge
 import * as grok from 'datagrok-api/grok';
 import * as DG from 'datagrok-api/dg';
 import { HELM_CORE_FIELDS } from '../utils/const';
-import { getSplitter } from '../utils/macromolecule';
-// import {UnitsHandler} from '../utils/units-handler';
+import { getSplitter } from '../utils/macromolecule/utils';
 import { NotationConverter } from '../utils/notation-converter';
 import { errorToConsole } from '@datagrok-libraries/utils/src/to-console';
 // constants for parsing molfile V2000